UHGV-0077134

Genome information

Genome length 24,289 bps

CDS count 36

Completeness 57.49% (medium-quality)

geNomad score 0.9700

Prediction confidence Confident

Genome information
Genome ID	UHGV-0077134
vOTU ID	vOTU-041184
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_121325
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.49% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9700
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	22.57
Jumbo phage	No

Genome content
Genome length	24,289 bps
GC content	49.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	84.73%
Average CDS length	574.83 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0077134_1	KOfam	K21039	int; enterobacteria phage integrase [EC:2.7.7.- 3.1.-.-]	NA
UHGV-0077134_1	PHROG	phrog_7244	integrase	integration and excision
UHGV-0077134_1	UniRef90	UniRef90_A0A630YF41	Integrase	NA
UHGV-0077134_1	eggNOG-mapper	199310.c1400	Belongs to the 'phage' integrase family	NA
UHGV-0077134_1	Pfam	PF09003	Bacteriophage lambda integrase, Arm DNA-binding domain	Arm-DNA-bind_1
UHGV-0077134_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0077134_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0077134_1	Structural annotation	PF00589, PF09003, PF02899, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0077134_2	PHROG	phrog_629	excisionase	integration and excision
UHGV-0077134_2	UniRef90	UniRef90_A0A0A0G4H8	Putative excisionase	NA
UHGV-0077134_2	eggNOG-mapper	155864.EDL933_1702	NA	NA
UHGV-0077134_2	Pfam	PF07825	Excisionase-like protein	Exc
UHGV-0077134_2	Structural annotation	PF07825	NA	NA
UHGV-0077134_3	KOfam	K10906	recE; exodeoxyribonuclease VIII [EC:3.1.11.-]	NA
UHGV-0077134_3	PHROG	phrog_2082	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0077134_3	UniRef90	UniRef90_UPI0018A40B81	exonuclease	NA
UHGV-0077134_3	eggNOG-mapper	502347.ESCAB7627_3546	3' exoribonuclease, RNase T-like	NA
UHGV-0077134_3	Pfam	PF16473	3'-5' exoribonuclease Rv2179c-like domain	Rv2179c-like
UHGV-0077134_3	COG	COG0847	DNA polymerase III, epsilon subunit or related 3'-5' exonuclease	NA
UHGV-0077134_3	Structural annotation	PF16473, PF06630, MF_00157, NF007259, NF005927, COG5018	NA	NA
UHGV-0077134_4	PHROG	phrog_1092	NA	unknown function
UHGV-0077134_4	UniRef90	UniRef90_A0A066R639	NA	NA
UHGV-0077134_4	eggNOG-mapper	1440052.EAKF1_ch4045c	NA	NA
UHGV-0077134_4	Pfam	PF07358	NA	DUF1482
UHGV-0077134_4	Structural annotation	PF07358	NA	NA
UHGV-0077134_5	KOfam	K22304	dicB; cell division inhibition protein DicB	NA
UHGV-0077134_5	PHROG	phrog_1251	NA	unknown function
UHGV-0077134_5	UniRef90	UniRef90_A0A061KZZ0	Cell division inhibition protein DicB	NA
UHGV-0077134_5	eggNOG-mapper	199310.c1405	Division inhibition protein dicB	NA
UHGV-0077134_5	Pfam	PF05358	DicB protein	DicB
UHGV-0077134_6	PHROG	phrog_1744	NA	unknown function
UHGV-0077134_6	UniRef90	UniRef90_B7LE77	YdfC protein	NA
UHGV-0077134_6	eggNOG-mapper	1440052.EAKF1_ch0489	NA	NA
UHGV-0077134_7	PHROG	phrog_2061	NA	unknown function
UHGV-0077134_7	UniRef90	UniRef90_A0A376FNW4	Putative prophage protein	NA
UHGV-0077134_7	eggNOG-mapper	316407.1742574	NA	NA
UHGV-0077134_8	PHROG	phrog_751	NA	unknown function
UHGV-0077134_8	UniRef90	UniRef90_A0A0H0GIG8	NA	NA
UHGV-0077134_8	eggNOG-mapper	199310.c1409	NA	NA
UHGV-0077134_8	Pfam	PF07151	NA	DUF1391
UHGV-0077134_8	Structural annotation	PF07151	NA	NA
UHGV-0077134_9	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0077134_9	PHROG	phrog_5736	transcriptional regulator	transcription regulation
UHGV-0077134_9	UniRef90	UniRef90_E2QMD5	Helix-turn-helix domain-containing protein	NA
UHGV-0077134_9	eggNOG-mapper	155864.EDL933_2316	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0077134_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0077134_9	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0077134_10	PHROG	phrog_35	transcriptional repressor	transcription regulation
UHGV-0077134_10	UniRef90	UniRef90_A0A0A2NER2	DNA-binding protein	NA
UHGV-0077134_10	eggNOG-mapper	155864.EDL933_2315	NA	NA
UHGV-0077134_10	Structural annotation	PF15943, COG4197	NA	NA
UHGV-0077134_11	PHROG	phrog_163	CII-like transcriptional activator	transcription regulation
UHGV-0077134_11	UniRef90	UniRef90_A7ZKN9	YdaT_toxin domain-containing protein	NA
UHGV-0077134_11	eggNOG-mapper	199310.c1411	Putative bacterial toxin ydaT	NA
UHGV-0077134_11	Pfam	PF06254	Bacterial toxin ydaT	YdaT_toxin
UHGV-0077134_11	Structural annotation	PF06254	NA	NA
UHGV-0077134_12	PHROG	phrog_3729	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0077134_12	UniRef90	UniRef90_UPI000B7D524C	phage replisome organizer	NA
UHGV-0077134_12	eggNOG-mapper	199310.c1412	NA	NA
UHGV-0077134_12	COG	COG3756	NA	NA
UHGV-0077134_13	PHROG	phrog_142	Ren-like exclusion protein	moron, auxiliary metabolic gene and host takeover
UHGV-0077134_13	UniRef90	UniRef90_A0A0L6XVP0	NA	NA
UHGV-0077134_13	eggNOG-mapper	502347.ESCAB7627_3532	NA	NA
UHGV-0077134_13	Pfam	PF06163	NA	DUF977
UHGV-0077134_13	Structural annotation	PF06163, MF_01586, NF011960, COG3388	NA	NA
UHGV-0077134_14	KOfam	K09765	queH; epoxyqueuosine reductase [EC:1.17.99.6]	NA
UHGV-0077134_14	PHROG	phrog_3217	NA	unknown function
UHGV-0077134_14	UniRef90	UniRef90_A0A198GLM8	Epoxyqueuosine reductase QueH	NA
UHGV-0077134_14	eggNOG-mapper	502347.ESCAB7627_3531	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)	NA
UHGV-0077134_14	Pfam	PF02677	Epoxyqueuosine reductase QueH	QueH
UHGV-0077134_14	COG	COG1636	Epoxyqueuosine reductase QueH (tRNA modification)	NA
UHGV-0077134_14	HAMAP	MF_02089	Epoxyqueuosine reductase QueH [queH]	NA
UHGV-0077134_15	KOfam	K18919	hokC_D; protein HokC/D	NA
UHGV-0077134_15	PHROG	phrog_251	MokW-like host killing	moron, auxiliary metabolic gene and host takeover
UHGV-0077134_15	UniRef90	UniRef90_A0A066R554	Hok/Gef family protein	NA
UHGV-0077134_15	eggNOG-mapper	10730.Q9XJM4_BP933	Hok/gef family	NA
UHGV-0077134_15	Pfam	PF01848	Hok/gef family	HOK_GEF
UHGV-0077134_15	Structural annotation	NF007279	NA	NA
UHGV-0077134_16	PHROG	phrog_96	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0077134_16	UniRef90	UniRef90_A0A8D5PDX7	HNHc domain-containing protein	NA
UHGV-0077134_16	eggNOG-mapper	155864.EDL933_1980	Corresponds to locus_tag	NA
UHGV-0077134_16	Pfam	PF06147	NA	DUF968
UHGV-0077134_16	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0077134_16	Structural annotation	PF06147	NA	NA
UHGV-0077134_17	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0077134_17	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0077134_17	UniRef90	UniRef90_E6BSZ0	Crossover junction endodeoxyribonuclease rusA	NA
UHGV-0077134_17	eggNOG-mapper	155864.EDL933_3027	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0077134_17	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0077134_17	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0077134_17	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0077134_18	PHROG	phrog_304	anti-termination protein Q-like	transcription regulation
UHGV-0077134_18	UniRef90	UniRef90_A0A0H2Z024	Putative Q antiterminator encoded by prophage CP-933P	NA
UHGV-0077134_18	eggNOG-mapper	155864.EDL933_2509	Phage antitermination protein Q	NA
UHGV-0077134_18	Pfam	PF06323	Phage antitermination protein Q	Phage_antiter_Q
UHGV-0077134_18	Structural annotation	PF06323	NA	NA
UHGV-0077134_19	PHROG	phrog_9876	holin	lysis
UHGV-0077134_19	UniRef90	UniRef90_P27360	Antiholin	NA
UHGV-0077134_19	eggNOG-mapper	1225789.M1FN85_9CAUD	Pfam:Phage_holin_2_1	NA
UHGV-0077134_19	Pfam	PF04971	Bacteriophage P21 holin S	Phage_holin_2_1
UHGV-0077134_19	Structural annotation	PF04971	NA	NA
UHGV-0077134_20	PHROG	phrog_406	NA	unknown function
UHGV-0077134_20	UniRef90	UniRef90_A0A862ZIW4	NA	NA
UHGV-0077134_20	eggNOG-mapper	469008.B21_01344	NA	NA
UHGV-0077134_20	Pfam	PF07041	NA	DUF1327
UHGV-0077134_20	Structural annotation	PF07041	NA	NA
UHGV-0077134_21	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0077134_21	PHROG	phrog_7	endolysin	lysis
UHGV-0077134_21	UniRef90	UniRef90_A0A066T2U5	Lysozyme	NA
UHGV-0077134_21	eggNOG-mapper	199310.c1436	Corresponds to locus_tag	NA
UHGV-0077134_21	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0077134_21	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0077134_21	HAMAP	MF_04110	Endolysin	NA
UHGV-0077134_21	Structural annotation	MF_04136, COG3772	NA	NA
UHGV-0077134_22	KOfam	K14744	rzpD; prophage endopeptidase [EC:3.4.-.-]	NA
UHGV-0077134_22	PHROG	phrog_13	Rz-like spanin	lysis
UHGV-0077134_22	UniRef90	UniRef90_B1LPZ9	Bacteriophage lysis protein	NA
UHGV-0077134_22	eggNOG-mapper	414970.A5LH84_9CAUD	Bacteriophage Rz lysis protein	NA
UHGV-0077134_22	Pfam	PF03245	Bacteriophage Rz lysis protein	Phage_lysis
UHGV-0077134_22	HAMAP	MF_04137	Spanin, inner membrane subunit	NA
UHGV-0077134_22	Structural annotation	PF03245, MF_04137	NA	NA
UHGV-0077134_23	PHROG	phrog_5415	NA	unknown function
UHGV-0077134_24	KOfam	K09161	NA	NA
UHGV-0077134_24	PHROG	phrog_6084	NA	unknown function
UHGV-0077134_24	UniRef90	UniRef90_UPI000E2AA7F0	YfbU family protein	NA
UHGV-0077134_24	eggNOG-mapper	202955.BBND01000048_gene1895	YfbU domain	NA
UHGV-0077134_24	Pfam	PF03887	YfbU domain	YfbU
UHGV-0077134_24	COG	COG3013	NA	NA
UHGV-0077134_24	Structural annotation	PF03887, MF_00762, NF003936, COG3013	NA	NA
UHGV-0077134_25	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0077134_25	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0077134_25	UniRef90	UniRef90_A0A0L6XVE5	HNH endonuclease	NA
UHGV-0077134_25	eggNOG-mapper	103807.Q8W633_9CAUD	endonuclease activity	NA
UHGV-0077134_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0077134_25	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0077134_26	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0077134_26	UniRef90	UniRef90_A0A0J2B4L5	Phage terminase small subunit P27 family	NA
UHGV-0077134_26	eggNOG-mapper	1147150.K7PHI2_9CAUD	Phage terminase, small subunit	NA
UHGV-0077134_26	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0077134_26	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0077134_26	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0077134_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0077134_27	UniRef90	UniRef90_A0A4C4IQY6	Phage terminase large subunit	NA
UHGV-0077134_27	eggNOG-mapper	1440052.EAKF1_ch0466c	Phage Terminase	NA
UHGV-0077134_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0077134_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0077134_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0077134_27	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0077134_28	PHROG	phrog_12	portal protein	head and packaging
UHGV-0077134_28	UniRef90	UniRef90_A0A0L7ACU7	Phage portal protein	NA
UHGV-0077134_28	eggNOG-mapper	399742.Ent638_2600	TIGRFAM Phage portal protein, HK97	NA
UHGV-0077134_28	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0077134_28	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0077134_28	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0077134_28	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0077134_29	KOfam	K06904	NA	NA
UHGV-0077134_29	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0077134_29	UniRef90	UniRef90_E6BSD6	Phage prohead protease, HK97 family	NA
UHGV-0077134_29	eggNOG-mapper	1082705.JIBP01000010_gene168	Prohead protease	NA
UHGV-0077134_29	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0077134_29	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0077134_29	COG	COG3740	Phage head maturation protease	NA
UHGV-0077134_29	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0077134_30	PHROG	phrog_10	major head protein	head and packaging
UHGV-0077134_30	UniRef90	UniRef90_A0A376VIQ7	Prophage major capsid protein	NA
UHGV-0077134_30	eggNOG-mapper	399742.Ent638_2598	TIGRFAM Phage major capsid protein, HK97	NA
UHGV-0077134_30	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0077134_30	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0077134_30	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0077134_30	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0077134_31	eggNOG-mapper	1524467.IV04_14625	Phage capsid family	NA
UHGV-0077134_31	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0077134_31	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0077134_32	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0077134_32	UniRef90	UniRef90_A0A0G3JSG3	Phage gp6-like head-tail connector protein	NA
UHGV-0077134_32	eggNOG-mapper	1332071.L581_3141	Phage gp6-like head-tail connector protein	NA
UHGV-0077134_32	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0077134_32	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0077134_32	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0077134_33	PHROG	phrog_25	head closure Hc1	connector
UHGV-0077134_33	UniRef90	UniRef90_A0A0G3JU98	Head-tail adaptor protein	NA
UHGV-0077134_33	eggNOG-mapper	35703.DQ02_21675	head-tail adaptor	NA
UHGV-0077134_33	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0077134_33	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0077134_33	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0077134_33	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0077134_34	PHROG	phrog_23409	NA	unknown function
UHGV-0077134_34	UniRef90	UniRef90_A0A0A6SE05	HK97 gp10 family phage protein	NA
UHGV-0077134_34	eggNOG-mapper	1440052.EAKF1_ch0458c	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0077134_34	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0077134_34	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0077134_34	Structural annotation	TIGR01725	NA	NA
UHGV-0077134_35	PHROG	phrog_347	tail terminator	connector
UHGV-0077134_35	UniRef90	UniRef90_D3GXN5	Putative prophage protein	NA
UHGV-0077134_35	eggNOG-mapper	1440052.EAKF1_ch0457c	NA	NA
UHGV-0077134_35	Pfam	PF11367	NA	DUF3168
UHGV-0077134_35	Structural annotation	PF11367	NA	NA
UHGV-0077134_36	PHROG	phrog_158	major tail protein	tail
UHGV-0077134_36	UniRef90	UniRef90_E6BSD0	Ig-like domain-containing protein	NA
UHGV-0077134_36	eggNOG-mapper	1440052.EAKF1_ch0456c	Immunoglobulin	NA
UHGV-0077134_36	Pfam	PF13895	Immunoglobulin domain	Ig_2
UHGV-0077134_36	Structural annotation	PF16461, PF13895, MF_04116, TIGR02126, COG5437	NA	NA