UHGV-0077159

Genome information

Genome length 22,666 bps

CDS count 40

Completeness 52.16% (medium-quality)

geNomad score 0.9653

Prediction confidence Confident

Genome information
Genome ID	UHGV-0077159
vOTU ID	vOTU-039805
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_123990
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	52.16% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9653
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.19
Jumbo phage	No

Genome content
Genome length	22,666 bps
GC content	32.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	88.22%
Average CDS length	502.58 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0077159_1	eggNOG-mapper	699218.HMPREF0889_1153	NA	NA
UHGV-0077159_4	PHROG	phrog_18996	NA	unknown function
UHGV-0077159_4	UniRef90	UniRef90_UPI001C3B7CE9	Prevent-host-death protein	NA
UHGV-0077159_4	eggNOG-mapper	888060.HMPREF9081_1707	NA	NA
UHGV-0077159_5	PHROG	phrog_365	tail protein	tail
UHGV-0077159_5	UniRef90	UniRef90_A0A2A2ILG5	Terminase	NA
UHGV-0077159_5	eggNOG-mapper	1111454.HMPREF1250_0192	Phage tail tube protein	NA
UHGV-0077159_5	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0077159_5	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0077159_6	PHROG	phrog_1480	tail sheath	tail
UHGV-0077159_6	UniRef90	UniRef90_H3K5C1	Phage_sheath_1C domain-containing protein	NA
UHGV-0077159_6	eggNOG-mapper	1111454.HMPREF1250_0191	Phage tail sheath C-terminal domain	NA
UHGV-0077159_6	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0077159_6	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0077159_6	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0077159_7	PHROG	phrog_525	NA	unknown function
UHGV-0077159_7	eggNOG-mapper	1273103.NM10_01044	NA	NA
UHGV-0077159_7	Pfam	PF20765	NA	DUF6838
UHGV-0077159_7	Structural annotation	PF20765	NA	NA
UHGV-0077159_8	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0077159_8	UniRef90	UniRef90_A0A1G9QVC1	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0077159_8	eggNOG-mapper	1123250.KB908414_gene2108	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0077159_8	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0077159_8	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0077159_9	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0077159_9	eggNOG-mapper	1273103.NM10_01054	NA	NA
UHGV-0077159_9	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0077159_10	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0077159_10	eggNOG-mapper	1123250.KB908414_gene2106	NA	NA
UHGV-0077159_12	PHROG	phrog_3220	NA	unknown function
UHGV-0077159_12	UniRef90	UniRef90_UPI001966F702	NA	NA
UHGV-0077159_12	eggNOG-mapper	203119.Cthe_1147	NA	NA
UHGV-0077159_12	Pfam	PF09954	NA	DUF2188
UHGV-0077159_12	Structural annotation	PF09954	NA	NA
UHGV-0077159_13	eggNOG-mapper	1031288.AXAA01000044_gene1977	NA	NA
UHGV-0077159_15	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0077159_15	UniRef90	UniRef90_A0A378NSX8	NAD+--asparagine ADP-ribosyltransferase	NA
UHGV-0077159_15	eggNOG-mapper	1273103.NM10_01064	Phage Mu protein F like protein	NA
UHGV-0077159_15	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0077159_15	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0077159_15	COG	COG2369	NA	NA
UHGV-0077159_15	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0077159_16	PHROG	phrog_247	major head protein	head and packaging
UHGV-0077159_16	UniRef90	UniRef90_D9R921	Phage coat protein	NA
UHGV-0077159_16	eggNOG-mapper	610130.Closa_1395	NA	NA
UHGV-0077159_16	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0077159_16	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0077159_17	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0077159_17	UniRef90	UniRef90_A0A378NUD8	Phage minor structural protein GP20	NA
UHGV-0077159_17	eggNOG-mapper	1273103.NM10_01074	Phage minor structural protein GP20	NA
UHGV-0077159_17	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0077159_17	Structural annotation	PF06810	NA	NA
UHGV-0077159_18	KOfam	K07296	ADIPOQ, ACDC; adiponectin	NA
UHGV-0077159_18	PHROG	phrog_64	portal protein	head and packaging
UHGV-0077159_18	UniRef90	UniRef90_UPI001CD66E01	phage portal protein	NA
UHGV-0077159_18	eggNOG-mapper	1273103.NM10_01084	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0077159_18	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0077159_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0077159_19	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0077159_19	UniRef90	UniRef90_H3K5B0	PBSX family phage terminase, large subunit	NA
UHGV-0077159_19	eggNOG-mapper	1232428.CAVO010000021_gene807	Phage terminase large subunit	NA
UHGV-0077159_19	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0077159_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-0077159_19	Structural annotation	PF17288, PF04466, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0077159_20	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0077159_20	UniRef90	UniRef90_UPI0006C04DBB	NUMOD4 motif-containing HNH endonuclease	NA
UHGV-0077159_20	eggNOG-mapper	749413.E5DV63_9VIRU	HNH endonuclease	NA
UHGV-0077159_20	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0077159_20	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0077159_20	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0077159_20	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0077159_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0077159_21	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0077159_21	UniRef90	UniRef90_UPI001EF47885	phage terminase large subunit	NA
UHGV-0077159_21	eggNOG-mapper	1235800.C819_00493	Phage terminase large subunit	NA
UHGV-0077159_21	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0077159_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0077159_22	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0077159_22	UniRef90	UniRef90_UPI00195DD4F5	phage terminase small subunit	NA
UHGV-0077159_22	eggNOG-mapper	1123511.KB905868_gene188	DNA packaging	NA
UHGV-0077159_22	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0077159_22	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0077159_22	COG	COG5484	NA	NA
UHGV-0077159_22	Structural annotation	NF040601, COG5484	NA	NA
UHGV-0077159_23	eggNOG-mapper	888060.HMPREF9081_1741	NA	NA
UHGV-0077159_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0077159_25	UniRef90	UniRef90_UPI00195D58A8	NA	NA
UHGV-0077159_25	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0077159_25	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0077159_29	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0077159_29	UniRef90	UniRef90_A0A412CG73	NA	NA
UHGV-0077159_29	eggNOG-mapper	169963.lmo2306	NA	NA
UHGV-0077159_29	Pfam	PF06356	NA	DUF1064
UHGV-0077159_33	PHROG	phrog_9804	NA	unknown function
UHGV-0077159_34	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0077159_35	PHROG	phrog_9403	NA	unknown function
UHGV-0077159_36	PHROG	phrog_398	NA	unknown function
UHGV-0077159_36	UniRef90	UniRef90_UPI000B9D7BC0	putative HNHc nuclease	NA
UHGV-0077159_36	eggNOG-mapper	936573.HMPREF1147_1303	Putative HNHc nuclease	NA
UHGV-0077159_36	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0077159_37	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0077159_37	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0077159_37	UniRef90	UniRef90_H3K6W7	HTH cro/C1-type domain-containing protein	NA
UHGV-0077159_37	eggNOG-mapper	97138.C820_02577	Helix-turn-helix domain	NA
UHGV-0077159_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0077159_37	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-0077159_38	UniRef90	UniRef90_A0A6N9QD39	NA	NA
UHGV-0077159_38	eggNOG-mapper	1508644.SFBmNL_01554	NA	NA
UHGV-0077159_38	Pfam	PF10387	NA	DUF2442
UHGV-0077159_38	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0077159_38	Structural annotation	PF10387	NA	NA
UHGV-0077159_39	PHROG	phrog_14333	NA	unknown function
UHGV-0077159_39	UniRef90	UniRef90_A0A2V2CXN4	NA	NA
UHGV-0077159_39	eggNOG-mapper	1508644.SFBmNL_01555	NA	NA
UHGV-0077159_39	Pfam	PF13711	NA	DUF4160
UHGV-0077159_39	Structural annotation	PF13711	NA	NA
UHGV-0077159_40	KOfam	K14059	int; integrase	NA
UHGV-0077159_40	PHROG	phrog_1	integrase	integration and excision
UHGV-0077159_40	UniRef90	UniRef90_UPI0019585FBF	site-specific integrase	NA
UHGV-0077159_40	eggNOG-mapper	864563.HMPREF9166_1293	Belongs to the 'phage' integrase family	NA
UHGV-0077159_40	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0077159_40	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0077159_40	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0077159_40	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA