UHGV-0077168

Genome information

Genome length 25,224 bps

CDS count 31

Completeness 62.47% (medium-quality)

geNomad score 0.9812

Prediction confidence Confident

Genome information
Genome ID	UHGV-0077168
vOTU ID	vOTU-041232
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_124215
BioSample	SAMEA2580193
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.47% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9812
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.98
Jumbo phage	No

Genome content
Genome length	25,224 bps
GC content	40.39%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	31
CDS density	92.93%
Average CDS length	759.97 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0077168_2	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0077168_2	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0077168_2	UniRef90	UniRef90_R9KUT1	HicB-like domain-containing protein	NA
UHGV-0077168_2	eggNOG-mapper	397288.C806_02660	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0077168_2	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0077168_2	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0077168_2	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0077168_3	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0077168_3	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0077168_3	UniRef90	UniRef90_A0A1E3C3U2	Toxin-antitoxin system, toxin component, HicA family protein	NA
UHGV-0077168_3	eggNOG-mapper	592031.GCWU000322_00749	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0077168_3	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0077168_3	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0077168_4	COG	COG4632	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	NA
UHGV-0077168_5	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0077168_5	UniRef90	UniRef90_R6MM87	Phage minor structural protein	NA
UHGV-0077168_5	eggNOG-mapper	755731.Clo1100_1175	Phage minor structural protein	NA
UHGV-0077168_5	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0077168_5	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0077168_5	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0077168_5	COG	COG4926	Phage-related protein	NA
UHGV-0077168_5	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0077168_6	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0077168_6	UniRef90	UniRef90_R6NBX8	Phage-related protein	NA
UHGV-0077168_6	eggNOG-mapper	1262449.CP6013_1050	PFAM Phage tail protein	NA
UHGV-0077168_6	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0077168_6	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0077168_6	COG	COG4722	Phage-related protein YomH	NA
UHGV-0077168_6	Structural annotation	PF05709, PF21766, TIGR01633, COG4722	NA	NA
UHGV-0077168_7	PHROG	phrog_12579	NA	unknown function
UHGV-0077168_7	UniRef90	UniRef90_R6MHA6	Putative tail tape measure protein	NA
UHGV-0077168_7	eggNOG-mapper	1054460.SPPN_00445	Phage tail tape measure protein, TP901 family	NA
UHGV-0077168_7	COG	COG5283	Phage-related tail protein	NA
UHGV-0077168_8	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0077168_8	UniRef90	UniRef90_UPI00085C1D1A	phage tail tape measure protein	NA
UHGV-0077168_8	eggNOG-mapper	1225805.J7KGW1_9CAUD	peptidoglycan catabolic process	NA
UHGV-0077168_8	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0077168_8	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0077168_11	PHROG	phrog_88	major tail protein	tail
UHGV-0077168_11	UniRef90	UniRef90_A0A1C6E366	Phage major tail protein, phi13 family	NA
UHGV-0077168_11	eggNOG-mapper	1348908.KI518589_gene2530	NA	NA
UHGV-0077168_11	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0077168_11	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0077168_12	PHROG	phrog_78	tail terminator	connector
UHGV-0077168_12	Structural annotation	PF05657	NA	NA
UHGV-0077168_13	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0077168_13	UniRef90	UniRef90_A0A7X5KS36	HK97 gp10 family phage protein	NA
UHGV-0077168_13	eggNOG-mapper	562981.HMPREF0428_01816	NA	NA
UHGV-0077168_13	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0077168_13	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0077168_13	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0077168_14	eggNOG-mapper	931276.Cspa_c26940	NA	NA
UHGV-0077168_14	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0077168_14	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0077168_15	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0077168_15	UniRef90	UniRef90_UPI00195DE3AA	phage head-tail connector protein	NA
UHGV-0077168_15	eggNOG-mapper	97138.C820_00227	Phage gp6-like head-tail connector protein	NA
UHGV-0077168_15	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0077168_15	Structural annotation	PF05135	NA	NA
UHGV-0077168_16	PHROG	phrog_10	major head protein	head and packaging
UHGV-0077168_16	UniRef90	UniRef90_A0A1C6E4H6	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0077168_16	eggNOG-mapper	1123250.KB908414_gene2105	Phage capsid family	NA
UHGV-0077168_16	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0077168_16	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0077168_16	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0077168_16	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0077168_16	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0077168_17	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0077168_17	UniRef90	UniRef90_A0A416CVN6	NA	NA
UHGV-0077168_17	Pfam	PF14265	NA	DUF4355
UHGV-0077168_17	Structural annotation	PF14265	NA	NA
UHGV-0077168_19	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0077168_19	UniRef90	UniRef90_A0A416CW54	Phage_Mu_F domain-containing protein	NA
UHGV-0077168_19	eggNOG-mapper	1280689.AUJC01000003_gene964	Phage Mu protein F like protein	NA
UHGV-0077168_19	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0077168_19	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0077168_19	COG	COG2369	NA	NA
UHGV-0077168_19	Structural annotation	PF21814, PF04233, TIGR01641, COG2369	NA	NA
UHGV-0077168_20	PHROG	phrog_64	portal protein	head and packaging
UHGV-0077168_20	UniRef90	UniRef90_A0A416CW21	Phage portal protein	NA
UHGV-0077168_20	eggNOG-mapper	1461246.X2KPH1_9VIRU	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0077168_20	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0077168_20	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0077168_20	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0077168_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0077168_21	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0077168_21	UniRef90	UniRef90_A0A416CVQ3	PBSX family phage terminase large subunit	NA
UHGV-0077168_21	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-0077168_21	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0077168_21	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0077168_21	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0077168_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0077168_21	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0077168_22	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0077168_22	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0077168_22	UniRef90	UniRef90_UPI00051C2283	terminase small subunit	NA
UHGV-0077168_22	eggNOG-mapper	1256908.HMPREF0373_00489	Terminase small subunit	NA
UHGV-0077168_22	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0077168_22	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0077168_22	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0077168_23	PHROG	phrog_21498	NA	unknown function
UHGV-0077168_23	UniRef90	UniRef90_A0A250ETS9	Chromosome partitioning protein ParB	NA
UHGV-0077168_23	eggNOG-mapper	1095750.HMPREF9970_2290	chromosome segregation	NA
UHGV-0077168_23	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0077168_23	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0077168_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0077168_24	UniRef90	UniRef90_A0A2K9P072	RNA polymerase subunit sigma-24	NA
UHGV-0077168_24	eggNOG-mapper	875454.BAEW01000002_gene486	NA	NA
UHGV-0077168_24	Structural annotation	PF07374	NA	NA
UHGV-0077168_26	Structural annotation	PF02796, COG2771	NA	NA
UHGV-0077168_28	eggNOG-mapper	1235802.C823_04654	NA	NA
UHGV-0077168_29	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0077168_29	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-0077168_29	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0077168_30	PHROG	phrog_13246	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0077168_30	eggNOG-mapper	1031288.AXAA01000044_gene1970	NA	NA
UHGV-0077168_30	Structural annotation	PF01978, MF_01819, TIGR01610, COG5625	NA	NA