UHGV-0077212

Genome information

Genome length 33,270 bps

CDS count 46

Completeness 95.19% (high-quality)

geNomad score 0.9658

Prediction confidence Confident

Genome information
Genome ID	UHGV-0077212
vOTU ID	vOTU-010426
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_153267
BioSample	NA
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.19% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9658
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.92
Jumbo phage	No

Genome content
Genome length	33,270 bps
GC content	40.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	85.15%
Average CDS length	618.07 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0077212_1	UniRef90	UniRef90_R6ECQ8	PINc domain-containing protein	NA
UHGV-0077212_1	eggNOG-mapper	1537915.JU57_12770	Large family of predicted nucleotide-binding domains	NA
UHGV-0077212_1	Pfam	PF01850	PIN domain	PIN
UHGV-0077212_1	COG	COG1487	Ribonuclease/mRNA interferase VapC, contains PIN domain	NA
UHGV-0077212_1	Structural annotation	PF01850, MF_00265, NF010285, COG1848	NA	NA
UHGV-0077212_2	KOfam	K03763	polC; DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]	NA
UHGV-0077212_2	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0077212_2	UniRef90	UniRef90_A0A174XM30	Exonuclease RNase T and DNA polymerase III	NA
UHGV-0077212_2	eggNOG-mapper	537013.CLOSTMETH_02498	EXOIII	NA
UHGV-0077212_2	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0077212_2	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0077212_2	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0077212_2	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0077212_2	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0077212_2	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA
UHGV-0077212_4	UniRef90	UniRef90_A0A0F0CM42	Transcriptional repressor DicA	NA
UHGV-0077212_4	eggNOG-mapper	411471.SUBVAR_05818	sequence-specific DNA binding	NA
UHGV-0077212_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0077212_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0077212_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0077212_6	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0077212_6	UniRef90	UniRef90_A0A3D5WJX6	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0077212_6	eggNOG-mapper	1410650.JHWL01000037_gene617	sulfate reduction	NA
UHGV-0077212_6	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0077212_6	Structural annotation	PF01507, MF_00063, NF002537, COG0175	NA	NA
UHGV-0077212_9	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0077212_9	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0077212_9	UniRef90	UniRef90_R6DJZ3	CobQ/CobB/MinD/ParA nucleotide binding domain protein	NA
UHGV-0077212_9	eggNOG-mapper	411459.RUMOBE_01750	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-0077212_9	Pfam	PF13614	AAA domain	AAA_31
UHGV-0077212_9	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0077212_9	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0077212_10	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0077212_10	PHROG	phrog_15982	NA	unknown function
UHGV-0077212_10	UniRef90	UniRef90_R6DUH4	ParB domain-containing protein	NA
UHGV-0077212_10	eggNOG-mapper	411470.RUMGNA_00213	ParB-like nuclease domain	NA
UHGV-0077212_10	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0077212_10	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0077212_12	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0077212_12	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0077212_12	UniRef90	UniRef90_R6DH82	Single-stranded DNA-binding protein	NA
UHGV-0077212_12	eggNOG-mapper	411459.RUMOBE_01118	NA	NA
UHGV-0077212_12	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0077212_12	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0077212_12	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0077212_12	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0077212_12	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0077212_13	PHROG	phrog_11237	NA	unknown function
UHGV-0077212_13	eggNOG-mapper	1235798.C817_02584	NA	NA
UHGV-0077212_14	PHROG	phrog_20437	DNA replication initiation	DNA, RNA and nucleotide metabolism
UHGV-0077212_14	UniRef90	UniRef90_R6DJZ9	NA	NA
UHGV-0077212_14	eggNOG-mapper	97138.C820_00626	NA	NA
UHGV-0077212_14	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0077212_14	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0077212_14	Structural annotation	PF14297	NA	NA
UHGV-0077212_15	UniRef90	UniRef90_A0A176U0S3	Toxin-antitoxin system, antitoxin component, HicB domain protein	NA
UHGV-0077212_15	eggNOG-mapper	1235835.C814_03454	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0077212_15	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0077212_15	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0077212_17	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0077212_17	UniRef90	UniRef90_R5RL55	HicB-like domain-containing protein	NA
UHGV-0077212_17	eggNOG-mapper	537007.BLAHAN_05445	NA	NA
UHGV-0077212_17	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0077212_17	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0077212_17	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0077212_21	UniRef90	UniRef90_A0A174QL97	Chemotaxis protein	NA
UHGV-0077212_21	eggNOG-mapper	1304866.K413DRAFT_0813	NA	NA
UHGV-0077212_21	Structural annotation	NF008671, COG4710	NA	NA
UHGV-0077212_23	UniRef90	UniRef90_R6DST6	Methyl-accepting chemotaxis protein	NA
UHGV-0077212_23	eggNOG-mapper	1042156.CXIVA_01520	NA	NA
UHGV-0077212_23	Structural annotation	PF10723, NF008671, COG4710	NA	NA
UHGV-0077212_24	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0077212_24	PHROG	phrog_216	integrase	integration and excision
UHGV-0077212_24	UniRef90	UniRef90_R6DK23	Tyr recombinase domain-containing protein	NA
UHGV-0077212_24	eggNOG-mapper	1235793.C809_02656	PFAM Phage integrase family	NA
UHGV-0077212_24	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0077212_24	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0077212_24	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0077212_25	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0077212_25	UniRef90	UniRef90_R6DUL0	Prophage LambdaBa04 GP54	NA
UHGV-0077212_25	eggNOG-mapper	1235793.C809_01915	HNH endonuclease	NA
UHGV-0077212_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0077212_26	PHROG	phrog_1066	NA	unknown function
UHGV-0077212_26	eggNOG-mapper	1235793.C809_01916	NA	NA
UHGV-0077212_26	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0077212_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0077212_27	UniRef90	UniRef90_R6DHA9	Terminase	NA
UHGV-0077212_27	eggNOG-mapper	1235793.C809_01917	Phage Terminase	NA
UHGV-0077212_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0077212_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0077212_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0077212_27	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0077212_28	PHROG	phrog_12	portal protein	head and packaging
UHGV-0077212_28	UniRef90	UniRef90_R6DSU5	Prophage LambdaBa04 portal protein	NA
UHGV-0077212_28	eggNOG-mapper	1382358.JHVN01000024_gene1705	Phage portal protein	NA
UHGV-0077212_28	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0077212_28	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0077212_28	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0077212_29	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0077212_29	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0077212_29	UniRef90	UniRef90_R6DK29	Gp4	NA
UHGV-0077212_29	eggNOG-mapper	330396.A8AT97_9CAUD	Clp protease	NA
UHGV-0077212_29	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0077212_29	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0077212_30	PHROG	phrog_10	major head protein	head and packaging
UHGV-0077212_30	UniRef90	UniRef90_R6DUL6	Putative prophage LambdaBa04 major capsid protein	NA
UHGV-0077212_30	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0077212_30	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0077212_30	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0077212_30	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0077212_30	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0077212_31	PHROG	phrog_5223	neck protein	connector
UHGV-0077212_31	UniRef90	UniRef90_A0A174XSK5	NA	NA
UHGV-0077212_31	eggNOG-mapper	198094.BA_0470	NA	NA
UHGV-0077212_31	Structural annotation	TIGR01560	NA	NA
UHGV-0077212_32	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0077212_32	UniRef90	UniRef90_R5RJH6	Phage head-tail adaptor	NA
UHGV-0077212_32	eggNOG-mapper	887929.HMP0721_1263	NA	NA
UHGV-0077212_32	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0077212_33	UniRef90	UniRef90_R6DWE8	HK97 gp10 family phage protein	NA
UHGV-0077212_33	eggNOG-mapper	1195236.CTER_5108	Phage protein, HK97 gp10 family	NA
UHGV-0077212_33	Structural annotation	TIGR01725	NA	NA
UHGV-0077212_34	PHROG	phrog_78	tail terminator	connector
UHGV-0077212_34	UniRef90	UniRef90_A0A3D4X921	Phage tail protein	NA
UHGV-0077212_34	eggNOG-mapper	1235792.C808_03059	phage major tail protein, phi13 family	NA
UHGV-0077212_34	COG	COG5492	NA	NA
UHGV-0077212_34	Structural annotation	PF05657	NA	NA
UHGV-0077212_35	PHROG	phrog_88	major tail protein	tail
UHGV-0077212_35	UniRef90	UniRef90_R6DJ87	Putative major tail protein	NA
UHGV-0077212_35	eggNOG-mapper	1399942.U3PBH4_9CAUD	NA	NA
UHGV-0077212_35	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0077212_35	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0077212_36	eggNOG-mapper	97139.C824_05964	NA	NA
UHGV-0077212_37	UniRef90	UniRef90_B1C718	RHH_1 domain-containing protein	NA
UHGV-0077212_37	eggNOG-mapper	445971.ANASTE_00515	NA	NA
UHGV-0077212_37	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0077212_40	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0077212_40	PHROG	phrog_33680	NA	unknown function
UHGV-0077212_40	UniRef90	UniRef90_R6DJ91	Phage tail tape measure protein TP901 family	NA
UHGV-0077212_40	eggNOG-mapper	498761.HM1_2969	nuclear chromosome segregation	NA
UHGV-0077212_40	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0077212_40	Structural annotation	PF10145, TIGR01760, TIGR02971, COG5280, COG3853	NA	NA
UHGV-0077212_41	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0077212_42	KOfam	K15352	pipB2; secreted effector protein PipB2	NA
UHGV-0077212_42	PHROG	phrog_3558	tail protein	tail
UHGV-0077212_42	eggNOG-mapper	1069533.Sinf_0798	Prophage endopeptidase tail	NA
UHGV-0077212_42	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0077212_42	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0077212_42	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0077212_42	COG	COG4926	Phage-related protein	NA
UHGV-0077212_43	eggNOG-mapper	1347392.CCEZ01000045_gene2	NA	NA
UHGV-0077212_44	PHROG	phrog_1863	NA	unknown function
UHGV-0077212_44	UniRef90	UniRef90_A0A8D9UH94	Hemolysin	NA
UHGV-0077212_44	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0077212_45	PHROG	phrog_443	holin	lysis
UHGV-0077212_45	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-0077212_45	eggNOG-mapper	1235802.C823_05612	Putative lactococcus lactis phage r1t holin	NA
UHGV-0077212_45	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0077212_45	Structural annotation	PF16945	NA	NA
UHGV-0077212_46	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0077212_46	PHROG	phrog_2649	endolysin	lysis
UHGV-0077212_46	UniRef90	UniRef90_R6DUN0	Peptidase_M15_4 domain-containing protein	NA
UHGV-0077212_46	eggNOG-mapper	397290.C810_03258	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0077212_46	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0077212_46	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0077212_46	Structural annotation	PF02557, MF_01924, NF000472, COG1876	NA	NA