UHGV-0077254

Genome information

Genome length 31,715 bps

CDS count 47

Completeness 91.93% (high-quality)

geNomad score 0.9765

Prediction confidence Confident

Genome information
Genome ID	UHGV-0077254
vOTU ID	vOTU-061598
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_151019
BioSample	NA
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.93% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9765
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.73
Jumbo phage	No

Genome content
Genome length	31,715 bps
GC content	38.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	93.23%
Average CDS length	631.28 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0077254_2	eggNOG-mapper	411463.EUBVEN_02225	COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis	NA
UHGV-0077254_2	COG	COG0630	Type IV secretory pathway ATPase VirB11/Archaellum biosynthesis ATPase ArlI/FlaI	NA
UHGV-0077254_3	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0077254_3	PHROG	phrog_95	integrase	integration and excision
UHGV-0077254_3	UniRef90	UniRef90_A0A143XYP5	DNA-invertase hin	NA
UHGV-0077254_3	eggNOG-mapper	883156.HMPREF9282_01201	Resolvase, N terminal domain	NA
UHGV-0077254_3	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0077254_3	Pfam	PF07508	Recombinase	Recombinase
UHGV-0077254_3	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0077254_3	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0077254_3	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0077254_5	UniRef90	UniRef90_A0A1C5RDF3	HTH cro/C1-type domain-containing protein	NA
UHGV-0077254_5	eggNOG-mapper	1567014.A0A0A7RTU8_9VIRU	protein disulfide oxidoreductase activity	NA
UHGV-0077254_5	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0077254_6	UniRef90	UniRef90_A0A174WQM8	Helix-turn-helix domain-containing protein	NA
UHGV-0077254_6	eggNOG-mapper	1430331.EP10_02425	NA	NA
UHGV-0077254_6	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0077254_8	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0077254_8	UniRef90	UniRef90_A0A285CXH5	ERF superfamily protein	NA
UHGV-0077254_8	eggNOG-mapper	1120971.AUCA01000037_gene2868	ERF superfamily	NA
UHGV-0077254_8	Pfam	PF04404	ERF superfamily	ERF
UHGV-0077254_8	Structural annotation	PF04404, TIGR00607, COG5055	NA	NA
UHGV-0077254_11	PHROG	phrog_6244	NA	unknown function
UHGV-0077254_11	eggNOG-mapper	1399942.U3PIX9_9CAUD	NA	NA
UHGV-0077254_11	Structural annotation	PF05565	NA	NA
UHGV-0077254_12	PHROG	phrog_298	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0077254_12	UniRef90	UniRef90_A0A843HPP6	PD-(D/E)XK nuclease family protein	NA
UHGV-0077254_12	eggNOG-mapper	1399942.U3PDT7_9CAUD	nuclease activity	NA
UHGV-0077254_12	Structural annotation	PF12705, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0077254_13	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0077254_13	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0077254_13	UniRef90	UniRef90_A5Z4B4	Single-stranded DNA-binding protein	NA
UHGV-0077254_13	eggNOG-mapper	411463.EUBVEN_00539	Single-stranded DNA-binding protein	NA
UHGV-0077254_13	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0077254_13	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0077254_13	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0077254_13	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0077254_13	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0077254_14	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0077254_14	eggNOG-mapper	1399942.U3PCT8_9CAUD	NA	NA
UHGV-0077254_14	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0077254_15	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0077254_15	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0077254_15	UniRef90	UniRef90_R7FGZ0	Gp63	NA
UHGV-0077254_15	eggNOG-mapper	428125.CLOLEP_01819	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0077254_15	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0077254_15	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0077254_16	PHROG	phrog_4973	NA	unknown function
UHGV-0077254_16	UniRef90	UniRef90_UPI00164C43FE	helix-turn-helix domain-containing protein	NA
UHGV-0077254_16	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0077254_16	Structural annotation	PF14090, TIGR00373, COG5625	NA	NA
UHGV-0077254_17	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0077254_17	UniRef90	UniRef90_A0A6A8SP07	Phage_rep_org_N domain-containing protein	NA
UHGV-0077254_17	eggNOG-mapper	702450.CUW_0518	Phage replisome organizer N-terminal	NA
UHGV-0077254_17	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0077254_17	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0077254_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0077254_17	Structural annotation	PF09681, TIGR01714, COG3756	NA	NA
UHGV-0077254_19	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0077254_19	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0077254_19	UniRef90	UniRef90_A3DI90	AAA ATPase	NA
UHGV-0077254_19	eggNOG-mapper	203119.Cthe_2467	IstB-like ATP binding protein	NA
UHGV-0077254_19	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0077254_19	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0077254_19	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0077254_19	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0077254_20	eggNOG-mapper	537007.BLAHAN_05460	NA	NA
UHGV-0077254_21	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0077254_21	UniRef90	UniRef90_A0A3E5ALS7	HNH endonuclease	NA
UHGV-0077254_21	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0077254_21	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0077254_21	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0077254_21	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0077254_24	KOfam	K07273	acm; lysozyme	NA
UHGV-0077254_24	PHROG	phrog_291	endolysin	lysis
UHGV-0077254_24	UniRef90	UniRef90_UPI0008713C11	peptidoglycan-binding protein	NA
UHGV-0077254_24	eggNOG-mapper	1120978.KB894083_gene891	Pfam:Cpl-7	NA
UHGV-0077254_24	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0077254_24	Pfam	PF01476	LysM domain	LysM
UHGV-0077254_24	COG	COG1388	LysM repeat	NA
UHGV-0077254_24	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0077254_25	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0077254_25	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0077254_25	UniRef90	UniRef90_I2E873	HNHc domain-containing protein (Fragment)	NA
UHGV-0077254_25	eggNOG-mapper	508419.F8J1A6_9CAUD	HNH endonuclease	NA
UHGV-0077254_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0077254_26	PHROG	phrog_13845	NA	unknown function
UHGV-0077254_26	eggNOG-mapper	1399942.U3PDR2_9CAUD	NA	NA
UHGV-0077254_26	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0077254_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0077254_27	UniRef90	UniRef90_A0A075KKZ0	Putative terminase large subunit	NA
UHGV-0077254_27	eggNOG-mapper	508419.F8J159_9CAUD	Phage Terminase	NA
UHGV-0077254_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0077254_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0077254_27	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0077254_28	PHROG	phrog_12	portal protein	head and packaging
UHGV-0077254_28	UniRef90	UniRef90_A0A843HZ12	Phage portal protein	NA
UHGV-0077254_28	eggNOG-mapper	1399942.U3PFW0_9CAUD	Phage portal protein	NA
UHGV-0077254_28	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0077254_28	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0077254_28	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0077254_29	KOfam	K06904	NA	NA
UHGV-0077254_29	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0077254_29	UniRef90	UniRef90_U3PIW1	Putative ClpP protease	NA
UHGV-0077254_29	eggNOG-mapper	1399942.U3PIW1_9CAUD	peptidase activity	NA
UHGV-0077254_29	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0077254_29	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0077254_29	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0077254_30	PHROG	phrog_10	major head protein	head and packaging
UHGV-0077254_30	UniRef90	UniRef90_A0A075KK19	Putative major head protein	NA
UHGV-0077254_30	eggNOG-mapper	1399942.U3PDR8_9CAUD	peptidase activity	NA
UHGV-0077254_30	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0077254_30	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0077254_30	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0077254_31	PHROG	phrog_6865	NA	unknown function
UHGV-0077254_31	eggNOG-mapper	1399942.U3PBG9_9CAUD	NA	NA
UHGV-0077254_31	Structural annotation	PF01281	NA	NA
UHGV-0077254_32	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0077254_32	UniRef90	UniRef90_UPI001BA8BAD6	head-tail connector protein	NA
UHGV-0077254_32	eggNOG-mapper	1399942.U3PCS3_9CAUD	NA	NA
UHGV-0077254_32	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0077254_32	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0077254_33	PHROG	phrog_25	head closure Hc1	connector
UHGV-0077254_33	UniRef90	UniRef90_A0A843I196	Phage head closure protein	NA
UHGV-0077254_33	eggNOG-mapper	508419.F8J165_9CAUD	Phage head-tail joining protein	NA
UHGV-0077254_33	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0077254_33	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0077254_33	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0077254_34	UniRef90	UniRef90_A0A843HUI9	HK97 gp10 family phage protein	NA
UHGV-0077254_34	eggNOG-mapper	508419.F8J166_9CAUD	NA	NA
UHGV-0077254_34	Structural annotation	TIGR01725	NA	NA
UHGV-0077254_35	PHROG	phrog_78	tail terminator	connector
UHGV-0077254_35	UniRef90	UniRef90_UPI0003697F12	NA	NA
UHGV-0077254_35	eggNOG-mapper	935948.KE386495_gene1329	NA	NA
UHGV-0077254_35	Structural annotation	PF05657	NA	NA
UHGV-0077254_36	PHROG	phrog_88	major tail protein	tail
UHGV-0077254_36	UniRef90	UniRef90_A0A075KJR8	Putative major tail protein	NA
UHGV-0077254_36	eggNOG-mapper	1399942.U3PBH4_9CAUD	NA	NA
UHGV-0077254_36	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0077254_36	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0077254_37	PHROG	phrog_2115	tail protein	tail
UHGV-0077254_37	eggNOG-mapper	1399942.U3PCS7_9CAUD	NA	NA
UHGV-0077254_37	Structural annotation	PF11836	NA	NA
UHGV-0077254_38	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0077254_38	eggNOG-mapper	1499683.CCFF01000017_gene2565	tape measure	NA
UHGV-0077254_38	COG	COG1511	NA	NA
UHGV-0077254_39	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0077254_39	UniRef90	UniRef90_A0A075KJA3	Putative tail component	NA
UHGV-0077254_39	eggNOG-mapper	1399942.U3PIW9_9CAUD	Phage tail protein	NA
UHGV-0077254_39	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0077254_39	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0077254_40	PHROG	phrog_1084	NA	unknown function
UHGV-0077254_40	eggNOG-mapper	1399942.U3PDS7_9CAUD	NA	NA
UHGV-0077254_40	Structural annotation	PF08481, NF032891, COG5456	NA	NA
UHGV-0077254_42	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0077254_42	UniRef90	UniRef90_A0A2P1CCB3	Prophage_tail domain-containing protein	NA
UHGV-0077254_42	eggNOG-mapper	1399942.U3PFX4_9CAUD	peptidoglycan catabolic process	NA
UHGV-0077254_42	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0077254_42	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0077254_42	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0077254_43	PHROG	phrog_372	tail protein	tail
UHGV-0077254_43	UniRef90	UniRef90_A0A1Y4NAZ0	Fibronectin type-III domain-containing protein	NA
UHGV-0077254_43	eggNOG-mapper	469596.HMPREF9488_01319	NA	NA
UHGV-0077254_43	Pfam	PF05895	NA	DUF859
UHGV-0077254_44	PHROG	phrog_4105	NA	unknown function
UHGV-0077254_44	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0077254_44	eggNOG-mapper	742733.HMPREF9469_05011	NA	NA
UHGV-0077254_47	Pfam	PF08681	NA	DUF1778
UHGV-0077254_47	Structural annotation	PF03869, NF010256	NA	NA