UHGV-0077256

Genome information

vOTU vOTU-021979

Genome length 35,324 bps

CDS count 52

Completeness 73.70% (medium-quality)

geNomad score 0.9605

Prediction confidence Confident

Genome information
Genome ID	UHGV-0077256
vOTU ID	vOTU-021979
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_151014
BioSample	NA
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.70% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9605
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.44
Jumbo phage	No

Genome content
Genome length	35,324 bps
GC content	45.24%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	94.18%
Average CDS length	645.92 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0077256_1	KOfam	K14059	int; integrase	NA
UHGV-0077256_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0077256_1	UniRef90	UniRef90_A0A6N9L4Z3	Tyrosine-type recombinase/integrase	NA
UHGV-0077256_1	eggNOG-mapper	397291.C804_06275	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0077256_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0077256_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0077256_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0077256_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0077256_2	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0077256_2	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0077256_2	UniRef90	UniRef90_M9M3D6	DNA polymerase III	NA
UHGV-0077256_2	eggNOG-mapper	545694.TREPR_3623	EXOIII	NA
UHGV-0077256_2	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0077256_2	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0077256_2	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0077256_2	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0077256_3	eggNOG-mapper	1122918.KB907248_gene4524	IrrE N-terminal-like domain	NA
UHGV-0077256_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0077256_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0077256_4	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0077256_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0077256_4	UniRef90	UniRef90_UPI00195603C9	helix-turn-helix domain-containing protein	NA
UHGV-0077256_4	eggNOG-mapper	1123511.KB905848_gene2931	sequence-specific DNA binding	NA
UHGV-0077256_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0077256_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0077256_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0077256_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0077256_5	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0077256_5	UniRef90	UniRef90_UPI0018C69424	helix-turn-helix domain-containing protein	NA
UHGV-0077256_5	eggNOG-mapper	927704.SELR_03000	sequence-specific DNA binding	NA
UHGV-0077256_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0077256_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0077256_6	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0077256_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0077256_6	UniRef90	UniRef90_UPI001C1F38DA	helix-turn-helix domain-containing protein	NA
UHGV-0077256_6	eggNOG-mapper	158189.SpiBuddy_2053	Helix-turn-helix domain	NA
UHGV-0077256_6	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0077256_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0077256_6	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0077256_10	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0077256_10	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0077256_10	UniRef90	UniRef90_A8SB92	Helicase C-terminal domain protein	NA
UHGV-0077256_10	eggNOG-mapper	478749.BRYFOR_07512	snf2 family	NA
UHGV-0077256_10	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0077256_10	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0077256_10	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0077256_10	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0077256_11	PHROG	phrog_2378	NA	unknown function
UHGV-0077256_11	UniRef90	UniRef90_A0A0E4GE38	STAT transcription factor, coiled coil	NA
UHGV-0077256_11	eggNOG-mapper	478749.BRYFOR_07515	NA	NA
UHGV-0077256_13	PHROG	phrog_23155	NA	unknown function
UHGV-0077256_13	eggNOG-mapper	935948.KE386495_gene1201	NA	NA
UHGV-0077256_13	Structural annotation	PF18897	NA	NA
UHGV-0077256_14	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0077256_14	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0077256_14	UniRef90	UniRef90_A8SB88	CHC2 zinc finger domain protein	NA
UHGV-0077256_14	eggNOG-mapper	1235835.C814_01167	NA	NA
UHGV-0077256_14	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0077256_14	Pfam	PF06048	NA	DUF927
UHGV-0077256_14	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0077256_14	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0077256_14	Structural annotation	PF06048, PF01807, PF18662, PF19898, MF_00974, MF_00016, TIGR01391, NF011296, COG5519, COG0358	NA	NA
UHGV-0077256_15	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0077256_15	UniRef90	UniRef90_UPI0018F72DBD	VRR-NUC domain-containing protein	NA
UHGV-0077256_15	eggNOG-mapper	1235835.C814_01172	phosphatase activity	NA
UHGV-0077256_15	COG	COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	NA
UHGV-0077256_15	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0077256_17	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0077256_17	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0077256_17	UniRef90	UniRef90_UPI00164A64BC	DNA cytosine methyltransferase	NA
UHGV-0077256_17	eggNOG-mapper	445972.ANACOL_03332	C-5 cytosine-specific DNA methylase	NA
UHGV-0077256_17	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0077256_17	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0077256_17	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0077256_17	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0077256_17	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0077256_18	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0077256_18	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0077256_18	UniRef90	UniRef90_A0A2V2ET76	Single-stranded DNA-binding protein	NA
UHGV-0077256_18	eggNOG-mapper	768710.DesyoDRAFT_5235	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0077256_18	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0077256_18	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0077256_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0077256_18	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0077256_18	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0077256_20	KOfam	K07497	K07497; putative transposase	NA
UHGV-0077256_20	PHROG	phrog_157	transposase	integration and excision
UHGV-0077256_20	UniRef90	UniRef90_A0A2V2G947	IS3 family transposase	NA
UHGV-0077256_20	eggNOG-mapper	1321784.HMPREF1987_01228	PFAM Integrase catalytic region	NA
UHGV-0077256_20	Pfam	PF00665	Integrase core domain	rve
UHGV-0077256_20	Pfam	PF13683	Integrase core domain	rve_3
UHGV-0077256_20	NCBIFam	NF033516.0	IS3 family transposase	NA
UHGV-0077256_20	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0077256_20	Structural annotation	PF00665, PF13333, MF_00042, NF033516, COG2801	NA	NA
UHGV-0077256_21	KOfam	K07483	K07483; transposase	NA
UHGV-0077256_21	PHROG	phrog_151	transposase	integration and excision
UHGV-0077256_21	UniRef90	UniRef90_A0A191HTZ8	Transposase	NA
UHGV-0077256_21	eggNOG-mapper	1329250.WOSG25_300030	Transposase and inactivated derivatives	NA
UHGV-0077256_21	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0077256_21	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0077256_21	Structural annotation	PF02796, MF_00674, NF006928, COG3415	NA	NA
UHGV-0077256_22	PHROG	phrog_3136	NA	unknown function
UHGV-0077256_22	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0077256_22	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0077256_25	eggNOG-mapper	1232449.BAHV02000018_gene1537	NA	NA
UHGV-0077256_26	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0077256_26	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0077256_26	UniRef90	UniRef90_A0A7C6S706	HNH endonuclease	NA
UHGV-0077256_26	eggNOG-mapper	768704.Desmer_4469	endonuclease activity	NA
UHGV-0077256_26	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0077256_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0077256_27	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0077256_27	UniRef90	UniRef90_A0A7C6S6L9	P27 family phage terminase small subunit	NA
UHGV-0077256_27	eggNOG-mapper	1123279.ATUS01000005_gene3097	Phage terminase, small subunit	NA
UHGV-0077256_27	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0077256_27	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0077256_28	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0077256_28	UniRef90	UniRef90_UPI001C3FF4F3	terminase large subunit	NA
UHGV-0077256_28	eggNOG-mapper	641107.CDLVIII_1335	Terminase	NA
UHGV-0077256_28	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0077256_28	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0077256_28	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0077256_28	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0077256_29	PHROG	phrog_12	portal protein	head and packaging
UHGV-0077256_29	UniRef90	UniRef90_A0A7C6W8A5	Phage portal protein	NA
UHGV-0077256_29	eggNOG-mapper	1094508.Tsac_2426	Portal protein	NA
UHGV-0077256_29	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0077256_29	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0077256_29	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0077256_30	KOfam	K06904	NA	NA
UHGV-0077256_30	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0077256_30	UniRef90	UniRef90_A0A069CX83	Protease	NA
UHGV-0077256_30	eggNOG-mapper	1329250.WOSG25_220150	Caudovirus prohead serine protease	NA
UHGV-0077256_30	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0077256_30	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0077256_30	COG	COG3740	Phage head maturation protease	NA
UHGV-0077256_30	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0077256_31	PHROG	phrog_10	major head protein	head and packaging
UHGV-0077256_31	UniRef90	UniRef90_UPI001EEEE1B8	phage major capsid protein	NA
UHGV-0077256_31	eggNOG-mapper	1094508.Tsac_2424	Phage capsid family	NA
UHGV-0077256_31	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0077256_31	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0077256_31	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0077256_31	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0077256_35	UniRef90	UniRef90_A0A7C6W8M8	HK97 gp10 family phage protein	NA
UHGV-0077256_35	Structural annotation	TIGR01725	NA	NA
UHGV-0077256_36	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0077256_39	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0077256_39	UniRef90	UniRef90_A0A7C6ZFM0	Phage tail tape measure protein (Fragment)	NA
UHGV-0077256_39	eggNOG-mapper	698769.JFBD01000002_gene2732	Phage tail tape measure protein	NA
UHGV-0077256_39	COG	COG3953	SLT domain protein	NA
UHGV-0077256_39	Structural annotation	TIGR01760	NA	NA
UHGV-0077256_40	Structural annotation	PF16774, PF21766, TIGR02241, COG4722	NA	NA
UHGV-0077256_41	Structural annotation	PF14594, TIGR03361, COG3500	NA	NA
UHGV-0077256_44	Structural annotation	PF08481, NF032891, COG5456	NA	NA
UHGV-0077256_46	PHROG	phrog_15439	peptidase	other
UHGV-0077256_46	eggNOG-mapper	742738.HMPREF9460_03963	tail collar domain protein	NA
UHGV-0077256_46	COG	COG4675	Phage tail collar domain	NA
UHGV-0077256_52	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0077256_52	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0077256_52	UniRef90	UniRef90_A0A1E5GIC4	Toxin HicA	NA
UHGV-0077256_52	eggNOG-mapper	1552123.EP57_02425	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0077256_52	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0077256_52	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0077256_52	Structural annotation	PF07927, COG1724	NA	NA