UHGV-0077271

Genome information

Genome length 58,139 bps

CDS count 102

Completeness 100.00% (complete)

geNomad score 0.9816

Prediction confidence Confident

Genome information
Genome ID	UHGV-0077271
vOTU ID	vOTU-052340
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_160553
BioSample	SAMEA3136638
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9816
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.87
Jumbo phage	No

Genome content
Genome length	58,139 bps
GC content	40.13%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	102
CDS density	86.01%
Average CDS length	493.71 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0077271_1	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0077271_1	UniRef90	UniRef90_A0A412RQP5	PAPS_reduct domain-containing protein	NA
UHGV-0077271_1	eggNOG-mapper	1151292.QEW_4547	NA	NA
UHGV-0077271_1	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0077271_1	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0077271_1	Structural annotation	NF010587	NA	NA
UHGV-0077271_3	PHROG	phrog_20593	NA	unknown function
UHGV-0077271_5	UniRef90	UniRef90_R7BIL7	Putative DNA topoisomerase I	NA
UHGV-0077271_5	eggNOG-mapper	397290.C810_05186	NA	NA
UHGV-0077271_6	eggNOG-mapper	483218.BACPEC_01162	sequence-specific DNA binding	NA
UHGV-0077271_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0077271_7	UniRef90	UniRef90_A0A415TX35	BAH domain-containing protein	NA
UHGV-0077271_7	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-0077271_8	PHROG	phrog_21026	NA	unknown function
UHGV-0077271_11	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0077271_11	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0077271_11	UniRef90	UniRef90_A0A173RD23	DNA helicase	NA
UHGV-0077271_11	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-0077271_11	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0077271_11	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0077271_11	COG	COG0305	Replicative DNA helicase	NA
UHGV-0077271_11	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0077271_12	PHROG	phrog_11769	NA	unknown function
UHGV-0077271_12	UniRef90	UniRef90_A0A173RDT0	Phage replisome organizer, putative, N-terminal region	NA
UHGV-0077271_12	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0077271_12	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0077271_12	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0077271_12	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0077271_13	Structural annotation	PF17388	NA	NA
UHGV-0077271_15	PHROG	phrog_19106	NA	unknown function
UHGV-0077271_15	UniRef90	UniRef90_A0A173RDE6	Group I intron endonuclease	NA
UHGV-0077271_15	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0077271_15	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0077271_15	Structural annotation	TIGR01453	NA	NA
UHGV-0077271_18	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0077271_18	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0077271_18	UniRef90	UniRef90_A0A173REW9	Beta-lactamase superfamily domain	NA
UHGV-0077271_18	eggNOG-mapper	1144313.PMI10_00501	Metallo-beta-lactamase superfamily	NA
UHGV-0077271_18	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0077271_18	dbAPIS	APIS058	NA	NA
UHGV-0077271_18	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0077271_18	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0077271_19	PHROG	phrog_25456	NA	unknown function
UHGV-0077271_20	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0077271_20	UniRef90	UniRef90_UPI00157154DF	recombinase RecT	NA
UHGV-0077271_20	eggNOG-mapper	1232453.BAIF02000057_gene1136	NA	NA
UHGV-0077271_20	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0077271_21	eggNOG-mapper	1232453.BAIF02000057_gene1135	NA	NA
UHGV-0077271_24	eggNOG-mapper	1449126.JQKL01000024_gene2354	NA	NA
UHGV-0077271_25	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0077271_25	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0077271_25	UniRef90	UniRef90_UPI001D02FD96	AAA family ATPase	NA
UHGV-0077271_25	eggNOG-mapper	1294142.CINTURNW_1008	nuclear chromosome segregation	NA
UHGV-0077271_25	Pfam	PF13476	AAA domain	AAA_23
UHGV-0077271_25	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0077271_25	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0077271_27	PHROG	phrog_26861	NA	unknown function
UHGV-0077271_27	UniRef90	UniRef90_A0A173RCS5	Single-stranded DNA-binding protein	NA
UHGV-0077271_27	eggNOG-mapper	483218.BACPEC_01931	Single-strand binding protein family	NA
UHGV-0077271_27	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0077271_27	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0077271_27	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0077271_31	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-0077271_31	UniRef90	UniRef90_UPI001D00AF42	ORF6N domain-containing protein	NA
UHGV-0077271_31	eggNOG-mapper	926561.KB900622_gene670	ORF6N domain	NA
UHGV-0077271_31	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0077271_31	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0077271_31	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-0077271_33	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0077271_33	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0077271_33	UniRef90	UniRef90_A0A6L8T004	Helix-turn-helix domain-containing protein	NA
UHGV-0077271_33	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0077271_33	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0077271_33	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0077271_33	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0077271_33	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0077271_34	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0077271_34	Structural annotation	NF040910	NA	NA
UHGV-0077271_35	eggNOG-mapper	1232452.BAIB02000007_gene1607	NA	NA
UHGV-0077271_36	eggNOG-mapper	553973.CLOHYLEM_06551	to Mitochondrial intermediate peptidase K01410	NA
UHGV-0077271_36	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0077271_37	PHROG	phrog_17196	kinase	other
UHGV-0077271_37	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0077271_37	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-0077271_38	PHROG	phrog_18190	NA	unknown function
UHGV-0077271_38	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-0077271_38	eggNOG-mapper	397290.C810_05239	NA	NA
UHGV-0077271_38	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0077271_38	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0077271_39	PHROG	phrog_1194	NA	unknown function
UHGV-0077271_39	Pfam	PF20458	NA	DUF6711
UHGV-0077271_39	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0077271_40	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0077271_40	UniRef90	UniRef90_UPI0009D7969F	transporter	NA
UHGV-0077271_40	eggNOG-mapper	1443125.Z962_p0009	BRO family, N-terminal domain	NA
UHGV-0077271_40	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0077271_40	COG	COG3617	Prophage antirepressor	NA
UHGV-0077271_40	Structural annotation	PF02498, COG3617	NA	NA
UHGV-0077271_41	PHROG	phrog_806	NA	unknown function
UHGV-0077271_41	UniRef90	UniRef90_UPI001D08E833	NA	NA
UHGV-0077271_41	eggNOG-mapper	1235802.C823_04880	NA	NA
UHGV-0077271_41	Pfam	PF11611	NA	DUF4352
UHGV-0077271_41	Structural annotation	PF11611, PF13828, MF_00791, NF003967, COG2967	NA	NA
UHGV-0077271_42	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0077271_42	UniRef90	UniRef90_A0A6L8T019	BIG2 domain-containing protein	NA
UHGV-0077271_42	eggNOG-mapper	1410632.JHWW01000012_gene97	haloacid dehalogenase-like hydrolase	NA
UHGV-0077271_42	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0077271_42	COG	COG0560	Phosphoserine phosphatase	NA
UHGV-0077271_42	Structural annotation	PF02368, NF041740	NA	NA
UHGV-0077271_43	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0077271_43	eggNOG-mapper	1211844.CBLM010000016_gene1482	tape measure	NA
UHGV-0077271_43	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0077271_43	Structural annotation	PF20155, MF_04138	NA	NA
UHGV-0077271_44	PHROG	phrog_14030	NA	unknown function
UHGV-0077271_44	UniRef90	UniRef90_A0A3R6ARM6	Peptidoglycan-binding protein	NA
UHGV-0077271_44	eggNOG-mapper	1235793.C809_02691	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0077271_44	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0077271_47	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-0077271_47	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0077271_48	Structural annotation	PF05657	NA	NA
UHGV-0077271_49	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0077271_49	AcrCatalog	cluster_24841	NA	NA
UHGV-0077271_50	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0077271_51	PHROG	phrog_443	holin	lysis
UHGV-0077271_51	UniRef90	UniRef90_UPI000BA3B743	holin	NA
UHGV-0077271_51	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-0077271_51	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0077271_51	Structural annotation	PF16945	NA	NA
UHGV-0077271_52	PHROG	phrog_4105	NA	unknown function
UHGV-0077271_52	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0077271_53	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0077271_54	PHROG	phrog_774	NA	unknown function
UHGV-0077271_54	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0077271_55	Structural annotation	PF21169	NA	NA
UHGV-0077271_56	PHROG	phrog_29	major head protein	head and packaging
UHGV-0077271_56	UniRef90	UniRef90_UPI001BB87CDE	Major capsid protein	NA
UHGV-0077271_56	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-0077271_56	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0077271_56	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0077271_57	PHROG	phrog_909	major head protein	head and packaging
UHGV-0077271_57	eggNOG-mapper	1232453.BAIF02000058_gene1627	NA	NA
UHGV-0077271_58	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0077271_59	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0077271_59	UniRef90	UniRef90_A0A3Q9RLP4	Deoxyuridine 5'-triphosphate nucleotidohydrolase family protein	NA
UHGV-0077271_59	eggNOG-mapper	1129192.A0A0E3D9L6_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0077271_60	UniRef90	UniRef90_A0A6H1WYD4	DNA-binding protein	NA
UHGV-0077271_60	eggNOG-mapper	1511.CLOST_0069	NA	NA
UHGV-0077271_60	Structural annotation	PF07878, NF041793, COG4877	NA	NA
UHGV-0077271_61	PHROG	phrog_64	portal protein	head and packaging
UHGV-0077271_61	UniRef90	UniRef90_A0A173UGW9	Phage portal protein, SPP1 family	NA
UHGV-0077271_61	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0077271_61	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0077271_61	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0077271_62	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0077271_62	UniRef90	UniRef90_A0A410QFZ6	NA	NA
UHGV-0077271_62	eggNOG-mapper	1121289.JHVL01000007_gene2767	sigma factor activity	NA
UHGV-0077271_62	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0077271_62	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0077271_63	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0077271_63	UniRef90	UniRef90_A0A8D9PG33	Terminase	NA
UHGV-0077271_63	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0077271_63	COG	COG5410	NA	NA
UHGV-0077271_63	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0077271_64	PHROG	phrog_2316	NA	unknown function
UHGV-0077271_64	UniRef90	UniRef90_A0A3E4YBW5	NA	NA
UHGV-0077271_64	eggNOG-mapper	1157490.EL26_01915	NA	NA
UHGV-0077271_64	Structural annotation	PF16475, MF_00436, NF033216	NA	NA
UHGV-0077271_65	UniRef90	UniRef90_R5CGZ9	DNA-directed RNA polymerase subunit alpha 2	NA
UHGV-0077271_65	eggNOG-mapper	1235802.C823_01840	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates	NA
UHGV-0077271_65	Pfam	PF03118	Bacterial RNA polymerase, alpha chain C terminal domain	RNA_pol_A_CTD
UHGV-0077271_65	COG	COG0202	DNA-directed RNA polymerase, alpha subunit/40 kD subunit	NA
UHGV-0077271_65	Structural annotation	PF03118, NF005841	NA	NA
UHGV-0077271_71	Structural annotation	PF04466	NA	NA
UHGV-0077271_74	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-0077271_75	UniRef90	UniRef90_A0A3R6JTP4	NA	NA
UHGV-0077271_75	Structural annotation	PF20037	NA	NA
UHGV-0077271_77	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0077271_77	UniRef90	UniRef90_UPI001D02B1F9	nucleoside triphosphate pyrophosphohydrolase family protein	NA
UHGV-0077271_77	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0077271_77	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0077271_77	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0077271_77	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA
UHGV-0077271_78	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0077271_79	Structural annotation	PF19923	NA	NA
UHGV-0077271_82	eggNOG-mapper	411470.RUMGNA_03786	Helix-turn-helix XRE-family like proteins	NA
UHGV-0077271_82	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0077271_83	PHROG	phrog_31631	NA	unknown function
UHGV-0077271_86	Structural annotation	PF08207, MF_00085, TIGR00037, COG0231	NA	NA
UHGV-0077271_87	Structural annotation	PF10694, MF_00403_B, NF007348, COG5569	NA	NA
UHGV-0077271_89	UniRef90	UniRef90_A0A173UED2	Predicted transcriptional regulator	NA
UHGV-0077271_89	eggNOG-mapper	1280689.AUJC01000024_gene150	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0077271_89	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0077271_90	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0077271_90	UniRef90	UniRef90_UPI001C02FA3A	Rha family transcriptional regulator	NA
UHGV-0077271_90	eggNOG-mapper	478749.BRYFOR_07645	Phage regulatory protein	NA
UHGV-0077271_90	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0077271_90	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0077271_90	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0077271_90	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0077271_93	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-0077271_93	Structural annotation	PF13058	NA	NA
UHGV-0077271_94	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0077271_95	PHROG	phrog_20016	NA	unknown function
UHGV-0077271_95	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0077271_95	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0077271_95	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0077271_96	PHROG	phrog_16490	NA	unknown function
UHGV-0077271_96	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0077271_97	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0077271_98	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0077271_100	KOfam	K14059	int; integrase	NA
UHGV-0077271_100	PHROG	phrog_1	integrase	integration and excision
UHGV-0077271_100	UniRef90	UniRef90_A0A173REA3	Site-specific tyrosine recombinase XerD	NA
UHGV-0077271_100	eggNOG-mapper	397291.C804_00897	Phage integrase family	NA
UHGV-0077271_100	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0077271_100	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0077271_100	Structural annotation	PF00589, PF02920, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0077271_101	UniRef90	UniRef90_A0A173RE24	Bacterial regulatory proteins, luxR family	NA
UHGV-0077271_101	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0077271_101	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-0077271_102	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0077271_102	UniRef90	UniRef90_A0A412RQR2	PAPS_reduct domain-containing protein	NA
UHGV-0077271_102	eggNOG-mapper	1280696.ATVY01000096_gene1971	NA	NA
UHGV-0077271_102	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0077271_102	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA