UHGV-0077297

Genome information

Genome length 34,899 bps

CDS count 67

Completeness 81.55% (medium-quality)

geNomad score 0.9748

Prediction confidence Confident

Genome information
Genome ID	UHGV-0077297
vOTU ID	vOTU-040063
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_156050
BioSample	NA
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.55% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9748
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.09
Jumbo phage	No

Genome content
Genome length	34,899 bps
GC content	50.88%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	86.00%
Average CDS length	452.28 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0077297_1	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0077297_1	eggNOG-mapper	1378168.N510_00538	NA	NA
UHGV-0077297_2	PHROG	phrog_13890	NA	unknown function
UHGV-0077297_2	UniRef90	UniRef90_A0A6I7FZ53	Arc family DNA-binding protein	NA
UHGV-0077297_2	eggNOG-mapper	1235797.C816_03578	NA	NA
UHGV-0077297_2	Pfam	PF03869	Arc-like DNA binding domain	Arc
UHGV-0077297_2	Structural annotation	PF19807, NF010256, COG4453	NA	NA
UHGV-0077297_4	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0077297_4	UniRef90	UniRef90_A0A6M3KU62	Putative tail tape measure protein	NA
UHGV-0077297_4	eggNOG-mapper	1408437.JNJN01000010_gene1238	domain protein	NA
UHGV-0077297_4	COG	COG1511	NA	NA
UHGV-0077297_5	eggNOG-mapper	1235790.C805_00083	NA	NA
UHGV-0077297_5	Structural annotation	PF10666	NA	NA
UHGV-0077297_10	UniRef90	UniRef90_A0A3D1LEC5	VPS37 C-terminal domain-containing protein	NA
UHGV-0077297_10	eggNOG-mapper	439235.Dalk_2800	NA	NA
UHGV-0077297_11	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0077297_11	UniRef90	UniRef90_A0A1C5NSG8	Sigma-70	NA
UHGV-0077297_11	eggNOG-mapper	742738.HMPREF9460_00723	Sigma-70, region 4	NA
UHGV-0077297_11	COG	COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	NA
UHGV-0077297_11	Structural annotation	PF07638, MF_00959, NF006147, COG0568	NA	NA
UHGV-0077297_12	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0077297_12	eggNOG-mapper	742738.HMPREF9460_00725	NA	NA
UHGV-0077297_12	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0077297_16	KOfam	K04485	radA, sms; DNA repair protein RadA/Sms	NA
UHGV-0077297_16	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0077297_16	UniRef90	UniRef90_A0A1C5NRV0	DNA primase (Bacterial type)	NA
UHGV-0077297_16	eggNOG-mapper	476272.RUMHYD_03614	NA	NA
UHGV-0077297_16	PADLOC	drt-cluster192	DRT	DRT
UHGV-0077297_16	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0077297_16	Pfam	PF13481	AAA domain	AAA_25
UHGV-0077297_16	COG	COG3598	RecA-family ATPase	NA
UHGV-0077297_16	Structural annotation	PF03796, MF_04154, TIGR02237, TIGR01391, COG3598, COG4643	NA	NA
UHGV-0077297_17	PHROG	phrog_2113	NA	unknown function
UHGV-0077297_17	eggNOG-mapper	1160721.RBI_II00485	NA	NA
UHGV-0077297_17	Structural annotation	PF08279, COG1654	NA	NA
UHGV-0077297_18	eggNOG-mapper	646529.Desaci_3040	TIGRFAM DNA binding domain, excisionase family	NA
UHGV-0077297_18	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0077297_19	KOfam	K14059	int; integrase	NA
UHGV-0077297_19	PHROG	phrog_1	integrase	integration and excision
UHGV-0077297_19	UniRef90	UniRef90_UPI001898152E	site-specific integrase	NA
UHGV-0077297_19	eggNOG-mapper	877411.JMMA01000002_gene2540	Belongs to the 'phage' integrase family	NA
UHGV-0077297_19	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0077297_19	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0077297_19	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0077297_19	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0077297_20	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0077297_20	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0077297_20	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0077297_20	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0077297_21	PHROG	phrog_3366	NA	unknown function
UHGV-0077297_21	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0077297_21	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0077297_22	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0077297_22	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-0077297_23	UniRef90	UniRef90_A0A8J6J3F8	Cadherin-like beta sandwich domain-containing protein	NA
UHGV-0077297_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0077297_24	PHROG	phrog_10	major head protein	head and packaging
UHGV-0077297_24	UniRef90	UniRef90_U2SBS0	Phage capsid family protein	NA
UHGV-0077297_24	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0077297_24	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0077297_24	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0077297_24	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0077297_24	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0077297_25	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0077297_25	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0077297_25	AcrCatalog	cluster_74817	NA	NA
UHGV-0077297_26	Structural annotation	PF11607, MF_00436, NF011232, COG1923	NA	NA
UHGV-0077297_27	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0077297_27	UniRef90	UniRef90_A0A1C5N7V1	Phage minor capsid protein 2	NA
UHGV-0077297_27	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0077297_27	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0077297_27	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0077297_27	COG	COG2369	NA	NA
UHGV-0077297_27	Structural annotation	PF06152, PF15542, TIGR01641, COG2369	NA	NA
UHGV-0077297_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-0077297_28	UniRef90	UniRef90_A0A1C5N775	Phage portal protein, putative, A118 family	NA
UHGV-0077297_28	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0077297_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0077297_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0077297_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0077297_29	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0077297_29	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0077297_29	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0077297_29	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0077297_29	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0077297_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0077297_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0077297_29	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0077297_30	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0077297_30	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0077297_30	UniRef90	UniRef90_UPI001A9B7F3C	terminase small subunit	NA
UHGV-0077297_30	eggNOG-mapper	981383.AEWH01000013_gene3797	Terminase small subunit	NA
UHGV-0077297_30	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0077297_30	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0077297_30	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0077297_31	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0077297_31	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0077297_31	UniRef90	UniRef90_A0A4D7AHN1	Helix-turn-helix domain-containing protein	NA
UHGV-0077297_31	eggNOG-mapper	1226322.HMPREF1545_00039	sequence-specific DNA binding	NA
UHGV-0077297_31	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0077297_31	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0077297_31	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0077297_34	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-0077297_34	UniRef90	UniRef90_A0A1C6B6A0	NA	NA
UHGV-0077297_34	eggNOG-mapper	1244856.K4PY83_9CAUD	Cytidine and deoxycytidylate deaminase zinc-binding region	NA
UHGV-0077297_34	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0077297_34	Structural annotation	PF18909	NA	NA
UHGV-0077297_36	PHROG	phrog_10928	NA	unknown function
UHGV-0077297_36	eggNOG-mapper	861530.ALOZ01000074_gene963	NA	NA
UHGV-0077297_38	PHROG	phrog_22543	NA	unknown function
UHGV-0077297_40	PHROG	phrog_38832	NA	unknown function
UHGV-0077297_42	Structural annotation	PF10711, TIGR03433	NA	NA
UHGV-0077297_45	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0077297_45	UniRef90	UniRef90_A0A845R569	Methyltransferase domain-containing protein	NA
UHGV-0077297_45	eggNOG-mapper	411461.DORFOR_01143	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-0077297_45	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0077297_45	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0077297_45	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0077297_45	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0077297_46	UniRef90	UniRef90_UPI0018AC14ED	Lar family restriction alleviation protein	NA
UHGV-0077297_46	eggNOG-mapper	742738.HMPREF9460_04054	Restriction alleviation protein Lar	NA
UHGV-0077297_46	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0077297_46	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0077297_47	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0077297_47	UniRef90	UniRef90_A0A7X8IB41	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0077297_47	eggNOG-mapper	469604.HMPREF0946_00819	NA	NA
UHGV-0077297_47	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0077297_48	PHROG	phrog_9804	NA	unknown function
UHGV-0077297_48	UniRef90	UniRef90_UPI0018976F94	replicative helicase loader/inhibitor	NA
UHGV-0077297_48	eggNOG-mapper	1121344.JHZO01000003_gene981	Loader and inhibitor of phage G40P	NA
UHGV-0077297_48	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0077297_48	Structural annotation	PF11417	NA	NA
UHGV-0077297_49	PHROG	phrog_16304	NA	unknown function
UHGV-0077297_49	UniRef90	UniRef90_UPI001E560709	NA	NA
UHGV-0077297_49	eggNOG-mapper	1035196.HMPREF9998_01752	NA	NA
UHGV-0077297_49	Pfam	PF19808	NA	DUF6291
UHGV-0077297_49	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0077297_49	Structural annotation	PF19808	NA	NA
UHGV-0077297_50	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0077297_50	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0077297_50	UniRef90	UniRef90_A0A8J7VJS5	Single-stranded DNA-binding protein	NA
UHGV-0077297_50	eggNOG-mapper	552398.HMPREF0866_02510	Single-stranded DNA-binding protein	NA
UHGV-0077297_50	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0077297_50	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0077297_50	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0077297_50	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0077297_50	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0077297_51	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0077297_51	UniRef90	UniRef90_A0A2Z4QA94	Recombination protein	NA
UHGV-0077297_51	eggNOG-mapper	445972.ANACOL_01826	HNH nucleases	NA
UHGV-0077297_51	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0077297_52	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0077297_52	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-0077297_52	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0077297_52	Structural annotation	PF05772	NA	NA
UHGV-0077297_53	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0077297_53	UniRef90	UniRef90_UPI001C126E67	ERF family protein	NA
UHGV-0077297_53	eggNOG-mapper	97138.C820_00777	ERF superfamily	NA
UHGV-0077297_53	Pfam	PF04404	ERF superfamily	ERF
UHGV-0077297_53	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0077297_56	Structural annotation	PF13560	NA	NA
UHGV-0077297_58	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0077297_59	PHROG	phrog_750	NA	unknown function
UHGV-0077297_59	eggNOG-mapper	742723.HMPREF9477_00931	NA	NA
UHGV-0077297_59	Structural annotation	PF13835, NF040858	NA	NA
UHGV-0077297_61	UniRef90	UniRef90_A0A845R4W0	XRE family transcriptional regulator	NA
UHGV-0077297_61	eggNOG-mapper	742738.HMPREF9460_02486	NA	NA
UHGV-0077297_61	Structural annotation	PF13443, NF000090, COG1813	NA	NA
UHGV-0077297_62	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0077297_62	UniRef90	UniRef90_UPI000C7BE75B	helix-turn-helix transcriptional regulator	NA
UHGV-0077297_62	eggNOG-mapper	742738.HMPREF9460_02485	Helix-turn-helix XRE-family like proteins	NA
UHGV-0077297_62	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0077297_62	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0077297_62	Structural annotation	PF12844, MF_02017, NF041951, COG3655	NA	NA
UHGV-0077297_63	PHROG	phrog_20886	NA	unknown function
UHGV-0077297_63	UniRef90	UniRef90_A0A644X5X5	Galectin domain-containing protein	NA
UHGV-0077297_64	PHROG	phrog_4611	minor head protein	head and packaging
UHGV-0077297_64	UniRef90	UniRef90_UPI001EDE047F	phage minor capsid protein	NA
UHGV-0077297_64	eggNOG-mapper	411902.CLOBOL_02557	NA	NA
UHGV-0077297_66	KOfam	K03071	secB; preprotein translocase subunit SecB	NA
UHGV-0077297_66	PHROG	phrog_21664	NA	unknown function
UHGV-0077297_66	UniRef90	UniRef90_A0A1C6EYC5	Preprotein translocase subunit SecB	NA
UHGV-0077297_66	eggNOG-mapper	158190.SpiGrapes_1635	protein tetramerization	NA
UHGV-0077297_66	Pfam	PF02556	Preprotein translocase subunit SecB	SecB
UHGV-0077297_66	COG	COG1952	Preprotein translocase subunit SecB	NA
UHGV-0077297_66	Structural annotation	PF02556, MF_00821, NF004391, COG1952	NA	NA