UHGV-0077306

Genome information

Genome length 47,625 bps

CDS count 62

Completeness 92.76% (high-quality)

geNomad score 0.9596

Prediction confidence Confident

Genome information
Genome ID	UHGV-0077306
vOTU ID	vOTU-010388
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_162110
BioSample	SAMEA3136627
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.76% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9596
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.97
Jumbo phage	No

Genome content
Genome length	47,625 bps
GC content	53.51%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	90.71%
Average CDS length	700.98 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0077306_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0077306_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0077306_1	UniRef90	UniRef90_A0A1T4WS75	Site-specific DNA recombinase	NA
UHGV-0077306_1	eggNOG-mapper	1297617.JPJD01000051_gene1859	Resolvase, N terminal domain	NA
UHGV-0077306_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0077306_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0077306_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0077306_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0077306_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0077306_4	Structural annotation	PF17426, NF004948	NA	NA
UHGV-0077306_5	UniRef90	UniRef90_A0A1T4WRJ9	RNA helicase	NA
UHGV-0077306_5	eggNOG-mapper	262768.PAM_667	ATPase activity	NA
UHGV-0077306_5	Pfam	PF01719	Plasmid replication protein	Rep_2
UHGV-0077306_5	Pfam	PF00910	RNA helicase	RNA_helicase
UHGV-0077306_5	COG	COG0464	AAA+-type ATPase, SpoVK/Ycf46/Vps4 family	NA
UHGV-0077306_5	Structural annotation	PF01719, PF20720, PF14157, MF_04000, NF007689, COG0572	NA	NA
UHGV-0077306_7	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-0077306_7	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0077306_7	UniRef90	UniRef90_A0A1T4WSB9	DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-0077306_7	eggNOG-mapper	742738.HMPREF9460_03544	FtsK/SpoIIIE family	NA
UHGV-0077306_7	PADLOC	SspH_00004	SspH	SSP
UHGV-0077306_7	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0077306_7	Structural annotation	PF01580, MF_00348, NF041214, COG1674	NA	NA
UHGV-0077306_9	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0077306_9	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0077306_9	UniRef90	UniRef90_A0A1T4WT58	Helicase conserved C-terminal domain-containing protein	NA
UHGV-0077306_9	eggNOG-mapper	742738.HMPREF9460_02499	helicase superfamily c-terminal domain	NA
UHGV-0077306_9	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0077306_9	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0077306_9	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0077306_9	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0077306_9	Structural annotation	PF04851, PF16203, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0077306_10	KOfam	K07491	rayT; REP-associated tyrosine transposase	NA
UHGV-0077306_10	UniRef90	UniRef90_A0A1T4WS04	REP element-mobilizing transposase RayT	NA
UHGV-0077306_10	eggNOG-mapper	293826.Amet_3793	Transposase IS200 like	NA
UHGV-0077306_10	Pfam	PF01797	Transposase IS200 like	Y1_Tnp
UHGV-0077306_10	COG	COG1943	REP element-mobilizing transposase RayT	NA
UHGV-0077306_12	UniRef90	UniRef90_UPI00195DA54E	helix-turn-helix domain-containing protein	NA
UHGV-0077306_12	eggNOG-mapper	1123511.KB905848_gene2930	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0077306_12	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0077306_12	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0077306_12	Structural annotation	PF13560, MF_00535, NF041951, COG3655	NA	NA
UHGV-0077306_13	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0077306_13	UniRef90	UniRef90_A0A1T4WS23	Ig-like domain (Group 2)	NA
UHGV-0077306_13	eggNOG-mapper	573061.Clocel_4109	Bacterial Ig-like domain 2	NA
UHGV-0077306_13	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0077306_13	COG	COG3210	Large exoprotein involved in heme utilization or adhesion	NA
UHGV-0077306_13	Structural annotation	PF02368, PF03921, PF21461, MF_04116, NF033186, COG5492	NA	NA
UHGV-0077306_14	UniRef90	UniRef90_A0A1T4WRX8	Bacteriocin transport accessory protein, putative	NA
UHGV-0077306_14	eggNOG-mapper	196164.23492870	NA	NA
UHGV-0077306_15	PHROG	phrog_6361	NA	unknown function
UHGV-0077306_15	UniRef90	UniRef90_A0A1Q6KQF4	SprT-like family protein	NA
UHGV-0077306_15	eggNOG-mapper	1235797.C816_02092	SprT-like family	NA
UHGV-0077306_15	Pfam	PF10263	SprT-like family	SprT-like
UHGV-0077306_15	Structural annotation	PF10263, MF_00745, NF003339, COG3091	NA	NA
UHGV-0077306_16	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0077306_16	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0077306_16	UniRef90	UniRef90_UPI001D0F3786	helix-turn-helix domain-containing protein	NA
UHGV-0077306_16	eggNOG-mapper	411471.SUBVAR_07015	NA	NA
UHGV-0077306_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0077306_16	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0077306_16	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-0077306_17	UniRef90	UniRef90_UPI0019671B18	transcriptional regulator	NA
UHGV-0077306_17	eggNOG-mapper	929506.CbC4_1187	NA	NA
UHGV-0077306_17	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0077306_22	PHROG	phrog_310	transposase	integration and excision
UHGV-0077306_22	UniRef90	UniRef90_A0A6N8H399	MerR family transcriptional regulator	NA
UHGV-0077306_22	eggNOG-mapper	411471.SUBVAR_07010	Mu transposase, C-terminal	NA
UHGV-0077306_22	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-0077306_22	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-0077306_22	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0077306_22	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-0077306_23	KOfam	K07132	MuB; ATP-dependent target DNA activator	NA
UHGV-0077306_23	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-0077306_23	UniRef90	UniRef90_A0A6N8H4X2	ATP-binding protein	NA
UHGV-0077306_23	eggNOG-mapper	411471.SUBVAR_07009	AAA domain	NA
UHGV-0077306_23	Pfam	PF13401	AAA domain	AAA_22
UHGV-0077306_23	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-0077306_25	PHROG	phrog_5671	NA	unknown function
UHGV-0077306_25	eggNOG-mapper	293826.Amet_0399	NA	NA
UHGV-0077306_26	PHROG	phrog_491	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0077306_26	UniRef90	UniRef90_D1PRH7	Putative bacteriophage Mu Gam like protein	NA
UHGV-0077306_26	eggNOG-mapper	411471.SUBVAR_07006	Bacteriophage Mu Gam like protein	NA
UHGV-0077306_26	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-0077306_26	COG	COG4396	Mu-like prophage host-nuclease inhibitor protein Gam	NA
UHGV-0077306_26	Structural annotation	PF07352, COG4396	NA	NA
UHGV-0077306_28	PHROG	phrog_286	NA	unknown function
UHGV-0077306_28	UniRef90	UniRef90_A0A6N8H086	Regulatory protein GemA	NA
UHGV-0077306_28	eggNOG-mapper	411471.SUBVAR_07005	NA	NA
UHGV-0077306_28	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-0077306_28	Structural annotation	PF06252	NA	NA
UHGV-0077306_29	PHROG	phrog_836	late transcriptional activator	transcription regulation
UHGV-0077306_29	UniRef90	UniRef90_A0A6N8H2N1	DNA-binding protein	NA
UHGV-0077306_29	eggNOG-mapper	411471.SUBVAR_07004	Mor transcription activator	NA
UHGV-0077306_29	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-0077306_29	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-0077306_29	Structural annotation	PF08765, COG5566	NA	NA
UHGV-0077306_30	PHROG	phrog_462	lipoprotein	other
UHGV-0077306_30	eggNOG-mapper	411471.SUBVAR_07003	NA	NA
UHGV-0077306_31	PHROG	phrog_25462	NA	unknown function
UHGV-0077306_31	UniRef90	UniRef90_A0A6N8H1D3	Type VI secretion protein	NA
UHGV-0077306_31	eggNOG-mapper	742733.HMPREF9469_02885	NA	NA
UHGV-0077306_31	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-0077306_32	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-0077306_32	UniRef90	UniRef90_A0A6N8H2N8	NA	NA
UHGV-0077306_32	eggNOG-mapper	411471.SUBVAR_07001	NA	NA
UHGV-0077306_32	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-0077306_32	Structural annotation	PF11985	NA	NA
UHGV-0077306_33	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-0077306_33	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-0077306_33	UniRef90	UniRef90_A0A6N8H0F4	NGN domain-containing protein	NA
UHGV-0077306_33	eggNOG-mapper	411471.SUBVAR_07000	Transcription termination factor nusG	NA
UHGV-0077306_33	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-0077306_33	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-0077306_33	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-0077306_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0077306_35	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0077306_35	UniRef90	UniRef90_A0A6N8H4Y1	PBSX family phage terminase large subunit	NA
UHGV-0077306_35	eggNOG-mapper	411471.SUBVAR_06998	Phage terminase, large subunit, PBSX family	NA
UHGV-0077306_35	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0077306_35	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0077306_35	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0077306_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-0077306_35	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0077306_37	PHROG	phrog_533	portal protein	head and packaging
UHGV-0077306_37	UniRef90	UniRef90_D1PRG7	Putative phage minor capsid protein	NA
UHGV-0077306_37	eggNOG-mapper	411471.SUBVAR_06996	NA	NA
UHGV-0077306_37	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0077306_38	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0077306_38	UniRef90	UniRef90_UPI00196795ED	phage minor capsid protein	NA
UHGV-0077306_38	eggNOG-mapper	411471.SUBVAR_06995	NA	NA
UHGV-0077306_38	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0077306_38	COG	COG2369	NA	NA
UHGV-0077306_38	Structural annotation	PF06152, PF14220	NA	NA
UHGV-0077306_41	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0077306_41	UniRef90	UniRef90_A0A4R1QTK7	Minor structural protein GP20	NA
UHGV-0077306_41	eggNOG-mapper	411471.SUBVAR_06994	Phage minor structural protein GP20	NA
UHGV-0077306_41	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0077306_41	Structural annotation	PF06810	NA	NA
UHGV-0077306_42	PHROG	phrog_422	major head protein	head and packaging
UHGV-0077306_42	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-0077306_42	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0077306_45	Structural annotation	PF20536	NA	NA
UHGV-0077306_46	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0077306_46	UniRef90	UniRef90_UPI001967B4B3	minor capsid protein	NA
UHGV-0077306_46	eggNOG-mapper	999411.HMPREF1092_03318	Minor capsid protein	NA
UHGV-0077306_46	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0077306_46	Structural annotation	PF11114	NA	NA
UHGV-0077306_47	PHROG	phrog_3266	tail completion	connector
UHGV-0077306_47	eggNOG-mapper	693746.OBV_18140	NA	NA
UHGV-0077306_47	Structural annotation	PF08873	NA	NA
UHGV-0077306_48	PHROG	phrog_3099	NA	unknown function
UHGV-0077306_48	eggNOG-mapper	411471.SUBVAR_06936	NA	NA
UHGV-0077306_48	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0077306_49	PHROG	phrog_11299	NA	unknown function
UHGV-0077306_49	eggNOG-mapper	665956.HMPREF1032_03059	NA	NA
UHGV-0077306_49	Structural annotation	PF10666	NA	NA
UHGV-0077306_50	PHROG	phrog_706	NA	unknown function
UHGV-0077306_50	UniRef90	UniRef90_UPI0013141117	Gp15 family bacteriophage protein	NA
UHGV-0077306_50	eggNOG-mapper	665956.HMPREF1032_03058	Bacteriophage Gp15 protein	NA
UHGV-0077306_50	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0077306_50	Structural annotation	PF06854	NA	NA
UHGV-0077306_51	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0077306_51	eggNOG-mapper	665956.HMPREF1032_03628	domain protein	NA
UHGV-0077306_51	COG	COG1511	NA	NA
UHGV-0077306_52	PHROG	phrog_1194	NA	unknown function
UHGV-0077306_52	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-0077306_52	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0077306_53	PHROG	phrog_13879	NA	unknown function
UHGV-0077306_53	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-0077306_53	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0077306_54	PHROG	phrog_18725	NA	unknown function
UHGV-0077306_54	eggNOG-mapper	1120746.CCNL01000014_gene2212	NA	NA
UHGV-0077306_56	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-0077306_56	Structural annotation	PF10651	NA	NA
UHGV-0077306_57	PHROG	phrog_17147	NA	unknown function
UHGV-0077306_57	eggNOG-mapper	657322.FPR_27150	NA	NA
UHGV-0077306_58	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0077306_58	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0077306_58	UniRef90	UniRef90_A0A348T010	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0077306_58	eggNOG-mapper	657322.FPR_27160	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0077306_58	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0077306_58	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-0077306_60	KOfam	K21472	lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]	NA
UHGV-0077306_60	PHROG	phrog_14988	peptidase	other
UHGV-0077306_60	UniRef90	UniRef90_A0A2V2FF85	Peptidase M23	NA
UHGV-0077306_60	eggNOG-mapper	411471.SUBVAR_05145	heme binding	NA
UHGV-0077306_60	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0077306_60	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0077306_60	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-0077306_61	PHROG	phrog_13256	NA	unknown function
UHGV-0077306_61	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0077306_62	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0077306_62	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0077306_62	UniRef90	UniRef90_UPI001C3B62EA	DNA adenine methylase	NA
UHGV-0077306_62	eggNOG-mapper	411471.SUBVAR_06973	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0077306_62	PADLOC	MTase_II_00039	Type II methyltransferase	RM
UHGV-0077306_62	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0077306_62	COG	COG0338	DNA-adenine methylase	NA
UHGV-0077306_62	Structural annotation	PF02086, TIGR00571, COG0338	NA	NA