UHGV-0077313

Genome information

Genome length 28,920 bps

CDS count 43

Completeness 73.13% (medium-quality)

geNomad score 0.9734

Prediction confidence Confident

Genome information
Genome ID	UHGV-0077313
vOTU ID	vOTU-025272
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_161386
BioSample	NA
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	73.13% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9734
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.56
Jumbo phage	No

Genome content
Genome length	28,920 bps
GC content	27.73%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	92.10%
Average CDS length	619.88 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0077313_1	PHROG	phrog_9829	NA	unknown function
UHGV-0077313_1	UniRef90	UniRef90_A0A072YLF4	Imm	NA
UHGV-0077313_1	eggNOG-mapper	1443122.Z958_06060	NA	NA
UHGV-0077313_3	PHROG	phrog_36443	NA	unknown function
UHGV-0077313_3	UniRef90	UniRef90_UPI001656337A	phage tail protein	NA
UHGV-0077313_3	eggNOG-mapper	411459.RUMOBE_00923	NA	NA
UHGV-0077313_3	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0077313_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0077313_3	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-0077313_3	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0077313_3	COG	COG4926	Phage-related protein	NA
UHGV-0077313_4	PHROG	phrog_1401	NA	unknown function
UHGV-0077313_4	UniRef90	UniRef90_UPI000A16CD19	NA	NA
UHGV-0077313_4	eggNOG-mapper	1499683.CCFF01000014_gene3897	NA	NA
UHGV-0077313_4	Pfam	PF07761	NA	DUF1617
UHGV-0077313_4	Structural annotation	PF07761	NA	NA
UHGV-0077313_5	PHROG	phrog_2566	NA	unknown function
UHGV-0077313_5	UniRef90	UniRef90_A0A7V8IA60	NA	NA
UHGV-0077313_5	eggNOG-mapper	1499683.CCFF01000014_gene3898	NA	NA
UHGV-0077313_6	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0077313_6	UniRef90	UniRef90_A0A1C6GX60	Phage-related protein	NA
UHGV-0077313_6	eggNOG-mapper	457396.CSBG_01058	phage tail	NA
UHGV-0077313_6	COG	COG4722	Phage-related protein YomH	NA
UHGV-0077313_6	Structural annotation	PF20753, PF19266, TIGR01633, COG4722	NA	NA
UHGV-0077313_7	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0077313_7	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0077313_7	UniRef90	UniRef90_A0A1C5YFW8	Phage-related minor tail protein	NA
UHGV-0077313_7	eggNOG-mapper	1151292.QEW_0351	Phage-related minor tail protein	NA
UHGV-0077313_7	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0077313_7	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0077313_7	COG	COG5283	Phage-related tail protein	NA
UHGV-0077313_8	eggNOG-mapper	1476973.JMMB01000007_gene1770	NA	NA
UHGV-0077313_9	PHROG	phrog_88	major tail protein	tail
UHGV-0077313_9	UniRef90	UniRef90_A0A1C5YFI0	Phage major tail protein, phi13 family	NA
UHGV-0077313_9	eggNOG-mapper	1151292.QEW_0347	Phage tail tube protein	NA
UHGV-0077313_9	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0077313_10	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0077313_11	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0077313_11	UniRef90	UniRef90_UPI00164E1F80	HK97 gp10 family phage protein	NA
UHGV-0077313_11	eggNOG-mapper	1499684.CCNP01000020_gene2283	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0077313_11	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0077313_11	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0077313_12	PHROG	phrog_25	head closure Hc1	connector
UHGV-0077313_12	UniRef90	UniRef90_A0A8B4D628	Head-tail adaptor protein	NA
UHGV-0077313_12	eggNOG-mapper	1540257.JQMW01000004_gene414	head-tail adaptor	NA
UHGV-0077313_12	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0077313_12	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0077313_12	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0077313_12	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0077313_13	UniRef90	UniRef90_UPI000A349D44	head-tail connector protein	NA
UHGV-0077313_13	eggNOG-mapper	1382315.JPOI01000001_gene279	Phage gp6-like head-tail connector protein	NA
UHGV-0077313_13	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0077313_13	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0077313_14	PHROG	phrog_10	major head protein	head and packaging
UHGV-0077313_14	UniRef90	UniRef90_UPI0012D770CE	phage major capsid protein	NA
UHGV-0077313_14	eggNOG-mapper	1211817.CCAT010000007_gene1037	Phage major capsid protein, HK97 family	NA
UHGV-0077313_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0077313_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0077313_14	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0077313_14	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0077313_15	KOfam	K06904	NA	NA
UHGV-0077313_15	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0077313_15	UniRef90	UniRef90_UPI0005E2BE9B	HK97 family phage prohead protease	NA
UHGV-0077313_15	eggNOG-mapper	1123288.SOV_2c03620	Caudovirus prohead serine protease	NA
UHGV-0077313_15	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0077313_15	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0077313_15	COG	COG3740	Phage head maturation protease	NA
UHGV-0077313_15	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0077313_16	PHROG	phrog_12	portal protein	head and packaging
UHGV-0077313_16	UniRef90	UniRef90_UPI001E6005BD	phage portal protein	NA
UHGV-0077313_16	eggNOG-mapper	1211817.CCAT010000007_gene1039	Portal protein	NA
UHGV-0077313_16	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0077313_16	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0077313_16	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0077313_17	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0077313_17	UniRef90	UniRef90_UPI001E2840F6	terminase large subunit	NA
UHGV-0077313_17	eggNOG-mapper	457396.CSBG_01046	Terminase	NA
UHGV-0077313_17	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0077313_17	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0077313_17	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0077313_17	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0077313_18	PHROG	phrog_1066	NA	unknown function
UHGV-0077313_18	UniRef90	UniRef90_UPI001E5C7227	zinc-binding protein	NA
UHGV-0077313_18	eggNOG-mapper	457396.CSBG_01045	NA	NA
UHGV-0077313_18	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0077313_19	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0077313_19	UniRef90	UniRef90_UPI001E535C34	HNH endonuclease	NA
UHGV-0077313_19	eggNOG-mapper	1211817.CCAT010000007_gene1042	HNH endonuclease	NA
UHGV-0077313_19	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0077313_19	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0077313_19	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0077313_20	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0077313_20	UniRef90	UniRef90_UPI001C80B796	transposase	NA
UHGV-0077313_20	eggNOG-mapper	457405.FSDG_01580	transposase activity	NA
UHGV-0077313_20	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0077313_20	Structural annotation	PF07141	NA	NA
UHGV-0077313_21	PHROG	phrog_1558	NA	unknown function
UHGV-0077313_21	UniRef90	UniRef90_UPI0005DD5B35	helix-turn-helix domain-containing protein	NA
UHGV-0077313_21	eggNOG-mapper	1211817.CCAT010000007_gene1046	NA	NA
UHGV-0077313_21	Structural annotation	PF08281, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-0077313_22	PHROG	phrog_824	NA	unknown function
UHGV-0077313_22	UniRef90	UniRef90_UPI000B821158	VRR-NUC domain-containing protein	NA
UHGV-0077313_22	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0077313_22	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0077313_22	Structural annotation	PF08774	NA	NA
UHGV-0077313_25	PHROG	phrog_3392	NA	unknown function
UHGV-0077313_25	eggNOG-mapper	1126950.G9J1S7_9CAUD	NA	NA
UHGV-0077313_26	PHROG	phrog_2462	NA	unknown function
UHGV-0077313_26	eggNOG-mapper	1204534.J9QEC7_9CAUD	NA	NA
UHGV-0077313_28	PHROG	phrog_98	NA	unknown function
UHGV-0077313_28	UniRef90	UniRef90_UPI000E34A494	YopX family protein	NA
UHGV-0077313_28	eggNOG-mapper	1220589.CD32_01175	YopX protein	NA
UHGV-0077313_28	Pfam	PF09643	YopX protein	YopX
UHGV-0077313_28	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0077313_28	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0077313_31	eggNOG-mapper	1230342.CTM_11058	NA	NA
UHGV-0077313_36	PHROG	phrog_1974	NA	unknown function
UHGV-0077313_36	UniRef90	UniRef90_UPI001C114AB8	nucleoid-associated protein	NA
UHGV-0077313_36	eggNOG-mapper	1292035.H476_1947	NA	NA
UHGV-0077313_36	Pfam	PF04245	37-kD nucleoid-associated bacterial protein	NA37
UHGV-0077313_36	COG	COG3081	dsDNA-binding nucleoid-associated protein YejK/NdpA	NA
UHGV-0077313_36	Structural annotation	PF04245, MF_00730, NF001557, COG3081	NA	NA
UHGV-0077313_38	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0077313_38	UniRef90	UniRef90_UPI000ABC0E2E	ORF6C domain-containing protein	NA
UHGV-0077313_38	eggNOG-mapper	642492.Clole_2799	Prophage antirepressor	NA
UHGV-0077313_38	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0077313_38	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0077313_38	COG	COG3617	Prophage antirepressor	NA
UHGV-0077313_38	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0077313_40	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0077313_40	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0077313_40	eggNOG-mapper	1321814.HMPREF9089_00921	NA	NA
UHGV-0077313_40	Structural annotation	PF21578	NA	NA
UHGV-0077313_42	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0077313_42	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0077313_42	UniRef90	UniRef90_A0A449SCR0	XRE family transcriptional regulator	NA
UHGV-0077313_42	eggNOG-mapper	398512.JQKC01000009_gene425	NA	NA
UHGV-0077313_42	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0077313_42	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0077313_42	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA