UHGV-0077330

Genome information

Genome length 36,024 bps

CDS count 51

Completeness 99.90% (high-quality)

geNomad score 0.9690

Prediction confidence Confident

Genome information
Genome ID	UHGV-0077330
vOTU ID	vOTU-011142
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_139197
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9690
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	63.69
Jumbo phage	No

Genome content
Genome length	36,024 bps
GC content	39.60%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	93.95%
Average CDS length	667.59 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0077330_1	KOfam	K14059	int; integrase	NA
UHGV-0077330_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0077330_1	UniRef90	UniRef90_A0A3A9C4F7	Site-specific integrase	NA
UHGV-0077330_1	eggNOG-mapper	1120998.AUFC01000030_gene2201	Belongs to the 'phage' integrase family	NA
UHGV-0077330_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0077330_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0077330_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0077330_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0077330_1	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0077330_2	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0077330_2	UniRef90	UniRef90_R5C1M0	KilA-N domain-containing protein	NA
UHGV-0077330_2	eggNOG-mapper	476272.RUMHYD_02819	COG NOG08824 non supervised orthologous group	NA
UHGV-0077330_2	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-0077330_2	Structural annotation	PF04383, NF033622, COG3943	NA	NA
UHGV-0077330_3	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0077330_3	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0077330_3	UniRef90	UniRef90_A0A1Y4UGX9	Endonuclease	NA
UHGV-0077330_3	eggNOG-mapper	1235802.C823_05685	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-0077330_3	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0077330_3	COG	COG4748	NA	NA
UHGV-0077330_4	PHROG	phrog_87	metallo-protease	other
UHGV-0077330_4	UniRef90	UniRef90_A0A6N7SRE2	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0077330_4	eggNOG-mapper	411460.RUMTOR_02055	IrrE N-terminal-like domain	NA
UHGV-0077330_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0077330_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0077330_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0077330_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0077330_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0077330_5	UniRef90	UniRef90_A0A2N5Q2U4	Transcriptional regulator	NA
UHGV-0077330_5	eggNOG-mapper	411460.RUMTOR_02056	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0077330_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0077330_5	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0077330_5	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0077330_6	UniRef90	UniRef90_A0A356C4L0	XRE family transcriptional regulator	NA
UHGV-0077330_6	eggNOG-mapper	862967.SIR_1696	Helix-turn-helix XRE-family like proteins	NA
UHGV-0077330_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0077330_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0077330_6	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0077330_8	PHROG	phrog_9607	NA	unknown function
UHGV-0077330_8	eggNOG-mapper	1378168.N510_03161	NA	NA
UHGV-0077330_8	Structural annotation	PF02883, MF_00791, NF012200, COG3354	NA	NA
UHGV-0077330_10	UniRef90	UniRef90_E9SE43	DNA binding domain protein, excisionase family	NA
UHGV-0077330_10	eggNOG-mapper	246199.CUS_5199	Helix-turn-helix domain	NA
UHGV-0077330_10	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0077330_10	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0077330_10	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0077330_12	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0077330_12	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0077330_12	UniRef90	UniRef90_A0A4R3JPG1	Phage anti-repressor protein	NA
UHGV-0077330_12	eggNOG-mapper	1567013.A0A0A7RVQ9_9CAUD	AntA/AntB antirepressor	NA
UHGV-0077330_12	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0077330_12	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0077330_12	Structural annotation	PF10552, PF08346, NF008573, COG3561	NA	NA
UHGV-0077330_15	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0077330_15	UniRef90	UniRef90_A0A844E6Y4	Recombinase	NA
UHGV-0077330_15	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-0077330_15	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0077330_15	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0077330_15	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0077330_15	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0077330_16	PHROG	phrog_674	NA	unknown function
UHGV-0077330_16	UniRef90	UniRef90_A0A417W7T9	NA	NA
UHGV-0077330_16	eggNOG-mapper	1095750.HMPREF9970_1676	NA	NA
UHGV-0077330_16	Pfam	PF07083	NA	DUF1351
UHGV-0077330_16	Structural annotation	PF07083	NA	NA
UHGV-0077330_17	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0077330_17	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0077330_17	UniRef90	UniRef90_R6E1Z6	Recombinase phage RecT family	NA
UHGV-0077330_17	eggNOG-mapper	742740.HMPREF9474_03488	RecT family	NA
UHGV-0077330_17	Pfam	PF03837	RecT family	RecT
UHGV-0077330_17	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0077330_17	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0077330_17	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0077330_18	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0077330_18	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0077330_18	UniRef90	UniRef90_UPI0018F5FF03	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0077330_18	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0077330_18	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0077330_18	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0077330_18	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0077330_19	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0077330_19	UniRef90	UniRef90_UPI001B2B22D5	DNA replication protein DnaD	NA
UHGV-0077330_19	eggNOG-mapper	1158601.I585_01182	Replication initiation and membrane attachment	NA
UHGV-0077330_19	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0077330_20	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0077330_20	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0077330_20	UniRef90	UniRef90_UPI001D1409E4	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0077330_20	eggNOG-mapper	1235800.C819_02256	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0077330_20	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0077330_20	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0077330_20	Structural annotation	PF01507, MF_00063, TIGR00434, COG0175	NA	NA
UHGV-0077330_21	UniRef90	UniRef90_K1TWB1	DNA methylase (Fragment)	NA
UHGV-0077330_21	eggNOG-mapper	1423816.BACQ01000027_gene957	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0077330_21	COG	COG0863	DNA modification methylase	NA
UHGV-0077330_23	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0077330_23	PHROG	phrog_29443	NA	unknown function
UHGV-0077330_23	UniRef90	UniRef90_UPI001C2DC3AD	DNA cytosine methyltransferase	NA
UHGV-0077330_23	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0077330_23	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0077330_23	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0077330_23	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0077330_23	Structural annotation	PF00145, MF_01857, TIGR00675, COG0270	NA	NA
UHGV-0077330_24	PHROG	phrog_18361	NA	unknown function
UHGV-0077330_24	UniRef90	UniRef90_A0A374HL96	YopX domain-containing protein	NA
UHGV-0077330_24	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0077330_24	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0077330_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0077330_25	UniRef90	UniRef90_UPI0011CB7084	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0077330_25	eggNOG-mapper	1232447.BAHW02000005_gene152	NA	NA
UHGV-0077330_25	Structural annotation	PF07374, MF_00674, NF001074	NA	NA
UHGV-0077330_26	PHROG	phrog_2412	NA	unknown function
UHGV-0077330_26	UniRef90	UniRef90_A0A4V1EFZ3	NA	NA
UHGV-0077330_26	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-0077330_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0077330_27	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0077330_27	UniRef90	UniRef90_UPI001915EFDD	PBSX family phage terminase large subunit	NA
UHGV-0077330_27	eggNOG-mapper	592031.GCWU000322_00074	Phage terminase large subunit	NA
UHGV-0077330_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0077330_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0077330_27	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0077330_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-0077330_28	UniRef90	UniRef90_A0A845KHN1	Phage portal protein	NA
UHGV-0077330_28	eggNOG-mapper	1120998.AUFC01000030_gene2232	NA	NA
UHGV-0077330_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0077330_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0077330_29	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0077330_29	UniRef90	UniRef90_UPI00191552C0	phage minor capsid protein	NA
UHGV-0077330_29	eggNOG-mapper	997296.PB1_16234	Phage minor capsid protein 2	NA
UHGV-0077330_29	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0077330_29	COG	COG2369	NA	NA
UHGV-0077330_29	Structural annotation	PF06152, PF15529	NA	NA
UHGV-0077330_30	eggNOG-mapper	1304866.K413DRAFT_0808	NA	NA
UHGV-0077330_30	Structural annotation	PF10827	NA	NA
UHGV-0077330_31	KOfam	K07584	NA	NA
UHGV-0077330_31	PHROG	phrog_4478	peptidase	other
UHGV-0077330_31	UniRef90	UniRef90_A0A3E4ME95	Ribosomal-processing cysteine protease Prp	NA
UHGV-0077330_31	eggNOG-mapper	1232453.BAIF02000011_gene3357	Cysteine protease Prp	NA
UHGV-0077330_31	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0077330_31	COG	COG2868	NA	NA
UHGV-0077330_31	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0077330_32	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0077330_32	eggNOG-mapper	1391647.AVSV01000003_gene1807	NA	NA
UHGV-0077330_33	PHROG	phrog_267	major head protein	head and packaging
UHGV-0077330_33	UniRef90	UniRef90_A0A1C6GMA6	S-l_SbsC_C domain-containing protein	NA
UHGV-0077330_33	eggNOG-mapper	718252.FP2_06660	NA	NA
UHGV-0077330_33	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0077330_34	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0077330_34	UniRef90	UniRef90_R5RS10	Protein gp8	NA
UHGV-0077330_34	eggNOG-mapper	997296.PB1_16199	NA	NA
UHGV-0077330_35	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0077330_35	UniRef90	UniRef90_UPI001D051971	minor capsid protein	NA
UHGV-0077330_35	eggNOG-mapper	1449343.JQLQ01000002_gene1330	Minor capsid protein	NA
UHGV-0077330_35	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0077330_35	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-0077330_35	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0077330_36	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0077330_36	UniRef90	UniRef90_UPI00082D57A1	minor capsid protein	NA
UHGV-0077330_36	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0077330_36	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0077330_37	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0077330_37	UniRef90	UniRef90_UPI001D058B7D	minor capsid protein	NA
UHGV-0077330_37	Structural annotation	PF12691	NA	NA
UHGV-0077330_38	PHROG	phrog_820	major tail protein	tail
UHGV-0077330_38	UniRef90	UniRef90_A0A3R6YSE8	Capsid protein	NA
UHGV-0077330_38	eggNOG-mapper	1231057.AMGD01000018_gene3613	Belongs to the glycosyl hydrolase family 6	NA
UHGV-0077330_38	COG	COG5492	NA	NA
UHGV-0077330_38	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0077330_39	UniRef90	UniRef90_A0A143ZVS5	Cse1 domain-containing protein	NA
UHGV-0077330_39	Structural annotation	PF10666	NA	NA
UHGV-0077330_40	PHROG	phrog_706	NA	unknown function
UHGV-0077330_40	UniRef90	UniRef90_UPI001D428365	bacteriophage Gp15 family protein	NA
UHGV-0077330_40	eggNOG-mapper	1238184.CM001792_gene103	Bacteriophage Gp15 protein	NA
UHGV-0077330_40	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0077330_40	Structural annotation	PF06854	NA	NA
UHGV-0077330_41	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0077330_41	UniRef90	UniRef90_UPI001DC4D1A6	phage tail tape measure protein	NA
UHGV-0077330_41	eggNOG-mapper	428125.CLOLEP_00174	tail tape measure protein, TP901	NA
UHGV-0077330_41	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0077330_41	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0077330_41	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0077330_42	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0077330_42	UniRef90	UniRef90_UPI001CC5BC32	phage tail protein	NA
UHGV-0077330_42	eggNOG-mapper	1391647.AVSV01000039_gene1109	phage tail	NA
UHGV-0077330_42	COG	COG4722	Phage-related protein YomH	NA
UHGV-0077330_42	Structural annotation	PF20753, PF19266, TIGR01633, COG4722	NA	NA
UHGV-0077330_43	PHROG	phrog_18110	NA	unknown function
UHGV-0077330_43	UniRef90	UniRef90_UPI00189C1E21	phage tail protein	NA
UHGV-0077330_43	eggNOG-mapper	457396.CSBG_01060	Phage minor structural protein	NA
UHGV-0077330_43	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0077330_43	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-0077330_43	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0077330_43	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0077330_43	COG	COG4926	Phage-related protein	NA
UHGV-0077330_43	Structural annotation	PF06605, PF20086, PF18099, TIGR01665, NF033675, COG4926	NA	NA
UHGV-0077330_44	PHROG	phrog_2566	NA	unknown function
UHGV-0077330_45	eggNOG-mapper	1294142.CINTURNW_1705	NA	NA
UHGV-0077330_45	Structural annotation	PF07761	NA	NA
UHGV-0077330_46	PHROG	phrog_4105	NA	unknown function
UHGV-0077330_46	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0077330_47	PHROG	phrog_443	holin	lysis
UHGV-0077330_47	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-0077330_47	eggNOG-mapper	1235802.C823_05612	Putative lactococcus lactis phage r1t holin	NA
UHGV-0077330_47	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0077330_47	Structural annotation	PF16945	NA	NA
UHGV-0077330_48	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0077330_48	PHROG	phrog_435	endolysin	lysis
UHGV-0077330_48	UniRef90	UniRef90_A0A416INH6	MurNAc-LAA domain-containing protein	NA
UHGV-0077330_48	eggNOG-mapper	537007.BLAHAN_05253	Ami_3	NA
UHGV-0077330_48	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0077330_48	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0077330_48	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, NF038080, COG0860, COG3409	NA	NA
UHGV-0077330_49	UniRef90	UniRef90_UPI000E4AC373	NA	NA
UHGV-0077330_49	eggNOG-mapper	1121115.AXVN01000132_gene727	NA	NA
UHGV-0077330_49	Pfam	PF19552	NA	DUF6075
UHGV-0077330_50	eggNOG-mapper	585394.RHOM_15655	NA	NA
UHGV-0077330_51	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0077330_51	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0077330_51	UniRef90	UniRef90_A0A3A9C982	ParA family protein (Fragment)	NA
UHGV-0077330_51	eggNOG-mapper	1235793.C809_00201	AAA domain	NA
UHGV-0077330_51	Pfam	PF13614	AAA domain	AAA_31
UHGV-0077330_51	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA