UHGV-0077396

Genome information

Genome length 42,419 bps

CDS count 73

Completeness 100.00% (complete)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-0077396
vOTU ID	vOTU-001165
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_145326
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44
Jumbo phage	No

Genome content
Genome length	42,419 bps
GC content	39.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	73
CDS density	92.19%
Average CDS length	541.07 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0077396_1	eggNOG-mapper	1235802.C823_04724	NA	NA
UHGV-0077396_4	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0077396_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0077396_4	UniRef90	UniRef90_A0A3R5Z350	XRE family transcriptional regulator	NA
UHGV-0077396_4	eggNOG-mapper	887325.HMPREF0381_0352	Helix-turn-helix XRE-family like proteins	NA
UHGV-0077396_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0077396_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0077396_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0077396_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0077396_6	KOfam	K19370	DNAJC22; DnaJ homolog subfamily C member 22	NA
UHGV-0077396_6	PHROG	phrog_10292	NA	unknown function
UHGV-0077396_6	UniRef90	UniRef90_A0A1Q6KIC5	TM2 domain-containing protein	NA
UHGV-0077396_6	eggNOG-mapper	665956.HMPREF1032_00562	TM2 domain	NA
UHGV-0077396_6	Pfam	PF05154	TM2 domain	TM2
UHGV-0077396_6	COG	COG2314	NA	NA
UHGV-0077396_7	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0077396_7	PHROG	phrog_95	integrase	integration and excision
UHGV-0077396_7	UniRef90	UniRef90_A0A1Q6KI87	Resolvase/invertase-type recombinase catalytic domain-containing protein	NA
UHGV-0077396_7	eggNOG-mapper	180332.JTGN01000010_gene4488	Resolvase, N terminal domain	NA
UHGV-0077396_7	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0077396_7	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0077396_7	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0077396_7	Structural annotation	PF00239, PF13408, PF14235, NF041201, COG1961, COG1579	NA	NA
UHGV-0077396_8	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0077396_8	PHROG	phrog_435	endolysin	lysis
UHGV-0077396_8	UniRef90	UniRef90_A0A1Q6KUK5	SPOR domain-containing protein	NA
UHGV-0077396_8	eggNOG-mapper	411490.ANACAC_00597	Cell wall hydrolase autolysin	NA
UHGV-0077396_8	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0077396_8	Pfam	PF05036	SPOR domain	SPOR
UHGV-0077396_8	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0077396_8	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0077396_9	PHROG	phrog_1129	holin	lysis
UHGV-0077396_9	UniRef90	UniRef90_A0A412KF76	Holin	NA
UHGV-0077396_9	eggNOG-mapper	1256908.HMPREF0373_00463	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0077396_9	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0077396_9	Structural annotation	PF06946	NA	NA
UHGV-0077396_10	PHROG	phrog_4105	NA	unknown function
UHGV-0077396_10	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0077396_11	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0077396_12	PHROG	phrog_18725	NA	unknown function
UHGV-0077396_12	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0077396_14	PHROG	phrog_13879	NA	unknown function
UHGV-0077396_14	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-0077396_14	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0077396_15	PHROG	phrog_1194	NA	unknown function
UHGV-0077396_15	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-0077396_15	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0077396_16	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0077396_16	eggNOG-mapper	1235800.C819_00476	tape measure	NA
UHGV-0077396_16	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0077396_17	PHROG	phrog_706	NA	unknown function
UHGV-0077396_17	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-0077396_17	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0077396_17	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0077396_17	Structural annotation	PF06854	NA	NA
UHGV-0077396_18	UniRef90	UniRef90_A0A412KF72	RNA polymerase subunit sigma	NA
UHGV-0077396_18	Structural annotation	PF10666	NA	NA
UHGV-0077396_19	PHROG	phrog_3099	NA	unknown function
UHGV-0077396_19	eggNOG-mapper	1235790.C805_00082	NA	NA
UHGV-0077396_19	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0077396_20	Structural annotation	PF12691	NA	NA
UHGV-0077396_21	PHROG	phrog_3366	NA	unknown function
UHGV-0077396_21	eggNOG-mapper	1235790.C805_00078	NA	NA
UHGV-0077396_21	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0077396_22	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0077396_22	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0077396_23	PHROG	phrog_544	major head protein	head and packaging
UHGV-0077396_23	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0077396_23	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0077396_23	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0077396_24	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0077396_24	UniRef90	UniRef90_UPI000E538A87	phage scaffolding protein	NA
UHGV-0077396_24	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0077396_24	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0077396_27	PHROG	phrog_1233	NA	unknown function
UHGV-0077396_27	eggNOG-mapper	397290.C810_01336	NA	NA
UHGV-0077396_27	Structural annotation	PF20352, COG2856	NA	NA
UHGV-0077396_28	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0077396_29	PHROG	phrog_20016	NA	unknown function
UHGV-0077396_29	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0077396_29	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0077396_29	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0077396_30	PHROG	phrog_16490	NA	unknown function
UHGV-0077396_30	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0077396_31	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0077396_32	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0077396_34	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0077396_34	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-0077396_34	eggNOG-mapper	645991.Sgly_0338	NA	NA
UHGV-0077396_34	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0077396_34	COG	COG2369	NA	NA
UHGV-0077396_34	Structural annotation	PF06152	NA	NA
UHGV-0077396_35	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0077396_35	UniRef90	UniRef90_UPI000E4A8F9F	minor capsid protein	NA
UHGV-0077396_35	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0077396_35	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0077396_35	Structural annotation	PF11114	NA	NA
UHGV-0077396_37	PHROG	phrog_533	portal protein	head and packaging
UHGV-0077396_37	UniRef90	UniRef90_A0A3R5WTT1	Phage capsid protein	NA
UHGV-0077396_37	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-0077396_37	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0077396_38	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0077396_38	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0077396_38	UniRef90	UniRef90_A0A3R5WSV0	Terminase_3 domain-containing protein	NA
UHGV-0077396_38	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0077396_38	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0077396_38	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0077396_38	COG	COG1783	Phage terminase large subunit	NA
UHGV-0077396_38	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0077396_39	PHROG	phrog_33130	NA	unknown function
UHGV-0077396_39	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-0077396_39	Structural annotation	PF10922	NA	NA
UHGV-0077396_40	eggNOG-mapper	478749.BRYFOR_07651	NA	NA
UHGV-0077396_40	Structural annotation	TIGR03826	NA	NA
UHGV-0077396_44	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0077396_44	UniRef90	UniRef90_A0A3R5WW48	XRE family transcriptional regulator	NA
UHGV-0077396_44	eggNOG-mapper	1235799.C818_04243	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0077396_44	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0077396_44	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0077396_46	UniRef90	UniRef90_A0A412KFA7	ABC transporter ATP-binding protein	NA
UHGV-0077396_51	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0077396_51	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0077396_51	UniRef90	UniRef90_A0A3R5ZDV7	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0077396_51	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0077396_51	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0077396_51	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0077396_51	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0077396_51	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0077396_52	UniRef90	UniRef90_UPI001C01D3C5	NA	NA
UHGV-0077396_52	eggNOG-mapper	622312.ROSEINA2194_04464	NA	NA
UHGV-0077396_52	Pfam	PF14199	NA	DUF4317
UHGV-0077396_52	Structural annotation	PF14199, MF_00730, NF001557, COG3081	NA	NA
UHGV-0077396_54	PHROG	phrog_874	NA	unknown function
UHGV-0077396_54	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-0077396_54	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0077396_54	Structural annotation	PF04266, MF_00684, NF003443, COG4043	NA	NA
UHGV-0077396_56	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0077396_56	UniRef90	UniRef90_A0A3R6FRA8	Restriction alleviation protein, Lar family	NA
UHGV-0077396_56	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0077396_56	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0077396_57	UniRef90	UniRef90_UPI001C02F342	NA	NA
UHGV-0077396_57	eggNOG-mapper	1235793.C809_01910	NA	NA
UHGV-0077396_58	PHROG	phrog_8684	NA	unknown function
UHGV-0077396_58	UniRef90	UniRef90_A0A6L6XDP0	YopX domain-containing protein	NA
UHGV-0077396_58	eggNOG-mapper	397290.C810_01526	YopX protein	NA
UHGV-0077396_58	Pfam	PF09643	YopX protein	YopX
UHGV-0077396_58	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0077396_58	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0077396_59	eggNOG-mapper	665950.HMPREF1025_02540	NA	NA
UHGV-0077396_62	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0077396_62	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0077396_62	UniRef90	UniRef90_A0A1Q6KIH9	IstB_IS21 domain-containing protein	NA
UHGV-0077396_62	eggNOG-mapper	742733.HMPREF9469_01844	IstB-like ATP binding protein	NA
UHGV-0077396_62	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0077396_62	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0077396_62	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0077396_63	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0077396_63	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-0077396_63	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0077396_63	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0077396_64	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0077396_64	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0077396_64	UniRef90	UniRef90_A0A412FH46	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0077396_64	eggNOG-mapper	1235790.C805_00029	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0077396_64	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0077396_64	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0077396_66	PHROG	phrog_398	NA	unknown function
UHGV-0077396_66	UniRef90	UniRef90_UPI001E5E0390	putative HNHc nuclease	NA
UHGV-0077396_66	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-0077396_66	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0077396_66	Structural annotation	PF16784	NA	NA
UHGV-0077396_67	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0077396_67	UniRef90	UniRef90_UPI001BC855FA	ERF family protein	NA
UHGV-0077396_67	eggNOG-mapper	1329250.WOSG25_420010	ERF superfamily	NA
UHGV-0077396_67	Pfam	PF04404	ERF superfamily	ERF
UHGV-0077396_67	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0077396_68	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-0077396_68	PHROG	phrog_5889	NA	unknown function
UHGV-0077396_68	UniRef90	UniRef90_A0A3R5ZBU3	HD family phosphohydrolase	NA
UHGV-0077396_68	eggNOG-mapper	411468.CLOSCI_00316	Metal dependent phosphohydrolases with conserved 'HD' motif.	NA
UHGV-0077396_68	Pfam	PF01966	HD domain	HD
UHGV-0077396_68	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0077396_68	Structural annotation	PF07514, MF_01427, NF010007, COG3481	NA	NA
UHGV-0077396_70	Structural annotation	PF15513, NF007469	NA	NA
UHGV-0077396_72	Structural annotation	PF11127	NA	NA