UHGV-0077438

Genome information

Genome length 53,375 bps

CDS count 89

Completeness 67.04% (medium-quality)

geNomad score 0.9618

Prediction confidence Confident

Genome information
Genome ID	UHGV-0077438
vOTU ID	vOTU-022570
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_148591
BioSample	NA
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	67.04% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9618
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.75
Jumbo phage	No

Genome content
Genome length	53,375 bps
GC content	30.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	89
CDS density	89.96%
Average CDS length	543.10 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0077438_4	UniRef90	UniRef90_UPI001C0BFF51	LITAF-like zinc ribbon domain-containing protein	NA
UHGV-0077438_4	Structural annotation	PF01096, TIGR04165, COG3478	NA	NA
UHGV-0077438_7	PHROG	phrog_3136	NA	unknown function
UHGV-0077438_9	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0077438_9	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0077438_9	UniRef90	UniRef90_A0A0H5Q3D7	Resolvase/invertase-type recombinase catalytic domain-containing protein	NA
UHGV-0077438_9	eggNOG-mapper	411465.PEPMIC_00596	Resolvase, N terminal domain	NA
UHGV-0077438_9	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0077438_9	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0077438_14	eggNOG-mapper	411470.RUMGNA_02203	NA	NA
UHGV-0077438_20	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0077438_20	UniRef90	UniRef90_A0A2I1M1E6	Phg_2220_C domain-containing protein	NA
UHGV-0077438_20	eggNOG-mapper	1220551.SCHR_00760	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0077438_20	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0077438_20	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0077438_20	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0077438_20	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0077438_20	Structural annotation	PF09524, PF04703, TIGR02220, NF040939, COG3355	NA	NA
UHGV-0077438_21	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0077438_21	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0077438_21	UniRef90	UniRef90_A0A173W8I3	DNA replication protein	NA
UHGV-0077438_21	eggNOG-mapper	1211844.CBLM010000016_gene1509	NA	NA
UHGV-0077438_21	Pfam	PF07728	AAA domain (dynein-related subfamily)	AAA_5
UHGV-0077438_21	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0077438_21	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0077438_27	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0077438_27	UniRef90	UniRef90_UPI000B3C28BC	phage terminase large subunit	NA
UHGV-0077438_27	eggNOG-mapper	428127.EUBDOL_01551	chromosome segregation	NA
UHGV-0077438_27	COG	COG5410	NA	NA
UHGV-0077438_27	Structural annotation	PF17289, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0077438_28	PHROG	phrog_64	portal protein	head and packaging
UHGV-0077438_28	UniRef90	UniRef90_UPI001BAAB616	phage portal protein	NA
UHGV-0077438_28	eggNOG-mapper	428127.EUBDOL_01552	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0077438_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0077438_28	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0077438_29	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0077438_30	PHROG	phrog_909	major head protein	head and packaging
UHGV-0077438_30	eggNOG-mapper	1118057.CAGX01000020_gene1615	NA	NA
UHGV-0077438_31	PHROG	phrog_29	major head protein	head and packaging
UHGV-0077438_31	UniRef90	UniRef90_UPI0004AE1FFD	major capsid protein	NA
UHGV-0077438_31	eggNOG-mapper	1232443.BAIA02000078_gene29	Phage major capsid protein E	NA
UHGV-0077438_31	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0077438_31	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0077438_34	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0077438_36	Structural annotation	PF06141	NA	NA
UHGV-0077438_37	eggNOG-mapper	469596.HMPREF9488_01310	NA	NA
UHGV-0077438_37	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0077438_40	PHROG	phrog_5493	tail length tape measure protein	tail
UHGV-0077438_40	eggNOG-mapper	1123263.AUKY01000015_gene1620	Phage tail tape measure protein TP901	NA
UHGV-0077438_40	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0077438_41	COG	COG1934	Lipopolysaccharide export system protein LptA	NA
UHGV-0077438_41	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0077438_47	PHROG	phrog_21718	NA	unknown function
UHGV-0077438_47	eggNOG-mapper	1235790.C805_00058	NA	NA
UHGV-0077438_49	PHROG	phrog_16490	NA	unknown function
UHGV-0077438_49	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0077438_50	UniRef90	UniRef90_A0A345BNU6	Spore surface glycoprotein	NA
UHGV-0077438_50	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0077438_52	PHROG	phrog_3754	NA	unknown function
UHGV-0077438_52	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0077438_53	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0077438_53	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0077438_53	eggNOG-mapper	1391647.AVSV01000022_gene2522	nuclear chromosome segregation	NA
UHGV-0077438_53	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0077438_53	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0077438_54	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0077438_54	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0077438_54	UniRef90	UniRef90_D7VCG3	Recombinase, phage RecT family	NA
UHGV-0077438_54	eggNOG-mapper	60520.HR47_13605	RecT family	NA
UHGV-0077438_54	Pfam	PF03837	RecT family	RecT
UHGV-0077438_54	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0077438_54	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0077438_54	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0077438_55	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0077438_55	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0077438_55	UniRef90	UniRef90_A0A127VZN1	MBL fold metallo-hydrolase	NA
UHGV-0077438_55	eggNOG-mapper	357276.EL88_12605	Metallo-beta-lactamase superfamily	NA
UHGV-0077438_55	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0077438_55	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0077438_55	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0077438_57	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0077438_57	UniRef90	UniRef90_D3ASX5	ERCC4 domain-containing protein	NA
UHGV-0077438_57	eggNOG-mapper	411460.RUMTOR_02068	NA	NA
UHGV-0077438_57	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0077438_57	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0077438_59	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0077438_59	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0077438_66	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0077438_67	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-0077438_67	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-0077438_67	UniRef90	UniRef90_R7GJX4	Beta sliding clamp	NA
UHGV-0077438_67	eggNOG-mapper	1203076.CAKF01000020_gene1599	Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP-independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria	NA
UHGV-0077438_67	Pfam	PF00712	DNA polymerase III beta subunit, N-terminal domain	DNA_pol3_beta
UHGV-0077438_67	Pfam	PF02767	DNA polymerase III beta subunit, central domain	DNA_pol3_beta_2
UHGV-0077438_67	Pfam	PF02768	DNA polymerase III beta subunit, C-terminal domain	DNA_pol3_beta_3
UHGV-0077438_67	NCBIFam	TIGR00663.1	DNA polymerase III subunit beta	NA
UHGV-0077438_67	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-0077438_67	Structural annotation	PF02768, PF00712, PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-0077438_71	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0077438_71	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0077438_71	UniRef90	UniRef90_R6E215	Methyltransferase	NA
UHGV-0077438_71	eggNOG-mapper	469596.HMPREF9488_00879	DNA methylase	NA
UHGV-0077438_71	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0077438_71	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0077438_71	COG	COG2189	Adenine specific DNA methylase Mod	NA
UHGV-0077438_71	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0077438_72	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0077438_72	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0077438_72	UniRef90	UniRef90_A0A0E1KQR8	Methyltransferase	NA
UHGV-0077438_72	eggNOG-mapper	1123298.KB904077_gene447	DNA modification methylase DNA replication, recombination, and repair	NA
UHGV-0077438_72	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0077438_72	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0077438_72	COG	COG0863	DNA modification methylase	NA
UHGV-0077438_79	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0077438_79	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0077438_79	UniRef90	UniRef90_R6N6X8	Resolvase/invertase-type recombinase catalytic domain-containing protein	NA
UHGV-0077438_79	eggNOG-mapper	273121.WS1926	Resolvase, N terminal domain	NA
UHGV-0077438_79	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0077438_79	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0077438_79	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0077438_82	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-0077438_82	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0077438_82	UniRef90	UniRef90_A0A7C1T2B1	DNA translocase FtsK	NA
UHGV-0077438_82	eggNOG-mapper	1118059.CAHC01000012_gene391	Ftsk_gamma	NA
UHGV-0077438_82	PADLOC	SspH_00004	SspH	SSP
UHGV-0077438_82	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-0077438_82	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0077438_85	PHROG	phrog_35696	NA	unknown function
UHGV-0077438_87	PHROG	phrog_4264	NA	unknown function
UHGV-0077438_87	eggNOG-mapper	1406785.U5PTP9_9CAUD	NA	NA