UHGV-0077439

Genome information

Genome length 27,263 bps

CDS count 43

Completeness 56.61% (medium-quality)

geNomad score 0.9653

Prediction confidence Confident

Genome information
Genome ID	UHGV-0077439
vOTU ID	vOTU-018445
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_141180
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.61% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9653
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.56
Jumbo phage	No

Genome content
Genome length	27,263 bps
GC content	55.60%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	88.26%
Average CDS length	564.70 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0077439_5	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0077439_5	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0077439_5	UniRef90	UniRef90_R7IJX0	HTH cro/C1-type domain-containing protein	NA
UHGV-0077439_5	eggNOG-mapper	742821.HMPREF9464_02173	Helix-turn-helix XRE-family like proteins	NA
UHGV-0077439_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0077439_5	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0077439_5	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0077439_5	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0077439_6	COG	COG4197	DNA-binding transcriptional regulator YdaS, prophage-encoded, Cro superfamily	NA
UHGV-0077439_7	PHROG	phrog_345	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0077439_7	UniRef90	UniRef90_A0A2D5CB97	Phage replication protein	NA
UHGV-0077439_7	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0077439_7	Structural annotation	PF10771, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-0077439_18	Structural annotation	PF06530, NF007225	NA	NA
UHGV-0077439_20	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0077439_20	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0077439_20	UniRef90	UniRef90_R5PK02	Putative HNH endonuclease	NA
UHGV-0077439_20	eggNOG-mapper	1357275.AVEL02000151_gene1515	HNH nucleases	NA
UHGV-0077439_20	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0077439_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0077439_20	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0077439_22	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0077439_22	UniRef90	UniRef90_A0A6L6YGN1	Phage terminase small subunit P27 family	NA
UHGV-0077439_22	eggNOG-mapper	1485544.JQKP01000008_gene1674	Phage terminase, small subunit	NA
UHGV-0077439_22	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0077439_22	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0077439_22	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0077439_22	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0077439_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0077439_23	UniRef90	UniRef90_A0A6L6YGT4	Terminase large subunit	NA
UHGV-0077439_23	eggNOG-mapper	742821.HMPREF9464_01834	Terminase	NA
UHGV-0077439_23	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0077439_23	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0077439_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0077439_23	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0077439_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-0077439_24	UniRef90	UniRef90_A0A1H8GIP2	Phage portal protein, HK97 family	NA
UHGV-0077439_24	eggNOG-mapper	742821.HMPREF9464_01833	Phage portal protein	NA
UHGV-0077439_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0077439_24	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0077439_24	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0077439_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0077439_25	KOfam	K06904	NA	NA
UHGV-0077439_25	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0077439_25	UniRef90	UniRef90_A0A6L6YJM7	HK97 family phage prohead protease	NA
UHGV-0077439_25	eggNOG-mapper	742821.HMPREF9464_01832	Caudovirus prohead serine protease	NA
UHGV-0077439_25	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0077439_25	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0077439_25	COG	COG3740	Phage head maturation protease	NA
UHGV-0077439_25	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0077439_26	PHROG	phrog_10	major head protein	head and packaging
UHGV-0077439_26	UniRef90	UniRef90_UPI000671041A	phage major capsid protein	NA
UHGV-0077439_26	eggNOG-mapper	742821.HMPREF9464_01831	Phage capsid family	NA
UHGV-0077439_26	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0077439_26	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0077439_26	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0077439_26	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0077439_27	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0077439_27	UniRef90	UniRef90_UPI0006713445	head-tail connector protein	NA
UHGV-0077439_27	eggNOG-mapper	1121871.AUAT01000022_gene1852	Phage gp6-like head-tail connector protein	NA
UHGV-0077439_27	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0077439_27	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0077439_27	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0077439_28	PHROG	phrog_25	head closure Hc1	connector
UHGV-0077439_28	UniRef90	UniRef90_UPI0007E2F3D8	phage head closure protein	NA
UHGV-0077439_28	eggNOG-mapper	742821.HMPREF9464_01829	Phage head-tail joining protein	NA
UHGV-0077439_28	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0077439_28	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0077439_29	PHROG	phrog_879	tail completion or Neck1 protein	connector
UHGV-0077439_29	UniRef90	UniRef90_A0A088UAH4	Bacteriophage HK97-gp10, tail-component family protein	NA
UHGV-0077439_29	eggNOG-mapper	279714.FuraDRAFT_0280	NA	NA
UHGV-0077439_29	Structural annotation	TIGR01725	NA	NA
UHGV-0077439_30	PHROG	phrog_209	portal protein	head and packaging
UHGV-0077439_30	eggNOG-mapper	29486.NJ56_17665	NA	NA
UHGV-0077439_30	Structural annotation	PF09646	NA	NA
UHGV-0077439_31	PHROG	phrog_165	tail sheath	tail
UHGV-0077439_31	UniRef90	UniRef90_UPI0016607B39	phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-0077439_31	eggNOG-mapper	742821.HMPREF9464_01827	tail sheath	NA
UHGV-0077439_31	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0077439_31	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0077439_31	COG	COG4386	Mu-like prophage tail sheath protein gpL	NA
UHGV-0077439_31	Structural annotation	PF10758, COG4386	NA	NA
UHGV-0077439_32	PHROG	phrog_185	tail tube protein	tail
UHGV-0077439_32	UniRef90	UniRef90_A0A2A7UXU0	Phage tail protein	NA
UHGV-0077439_32	eggNOG-mapper	1524467.IV04_21470	Phage tail tube protein	NA
UHGV-0077439_32	Pfam	PF10618	Phage tail tube protein	Tail_tube
UHGV-0077439_32	Structural annotation	PF10618, TIGR02241, COG3498	NA	NA
UHGV-0077439_34	PHROG	phrog_13338	NA	unknown function
UHGV-0077439_34	eggNOG-mapper	742821.HMPREF9464_01824	Phage-related minor tail protein	NA
UHGV-0077439_34	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0077439_34	COG	COG5283	Phage-related tail protein	NA
UHGV-0077439_34	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0077439_35	PHROG	phrog_184	DNA circularization	DNA, RNA and nucleotide metabolism
UHGV-0077439_35	UniRef90	UniRef90_A0A5B7ZLP1	DNA_circ_N domain-containing protein	NA
UHGV-0077439_35	eggNOG-mapper	742821.HMPREF9464_01823	DNA circularisation protein N-terminus	NA
UHGV-0077439_35	Pfam	PF07157	DNA circularisation protein N-terminus	DNA_circ_N
UHGV-0077439_35	COG	COG4228	Mu-like prophage DNA circulation protein	NA
UHGV-0077439_35	Structural annotation	PF07157, TIGR01633, COG4228	NA	NA
UHGV-0077439_36	PHROG	phrog_177	tail protein	tail
UHGV-0077439_36	UniRef90	UniRef90_A0A2W4U8P8	Baseplate protein	NA
UHGV-0077439_36	eggNOG-mapper	157783.LK03_15460	tail protein	NA
UHGV-0077439_36	Pfam	PF21683	Mu phage baseplate assembly protein GpP-like, N-terminal	GpP-like_1st
UHGV-0077439_36	COG	COG4379	Mu-like prophage tail protein gpP	NA
UHGV-0077439_36	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0077439_37	UniRef90	UniRef90_E7H532	Prophage MuSo2	NA
UHGV-0077439_37	eggNOG-mapper	742821.HMPREF9464_01820	Bacteriophage Mu Gp45 protein	NA
UHGV-0077439_37	Pfam	PF06890	Bacteriophage Mu Gp45 spike protein	Phage_Mu_Gp45
UHGV-0077439_37	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-0077439_37	COG	COG4384	NA	NA
UHGV-0077439_37	Structural annotation	PF06890, MF_00216, TIGR01644, COG4384	NA	NA
UHGV-0077439_38	PHROG	phrog_180	tail protein	tail
UHGV-0077439_38	UniRef90	UniRef90_A0A4D8QDT1	Phage tail protein	NA
UHGV-0077439_38	eggNOG-mapper	570967.JMLV01000018_gene455	Phage protein GP46	NA
UHGV-0077439_38	Pfam	PF07409	NA	GP46
UHGV-0077439_38	COG	COG4381	NA	NA
UHGV-0077439_38	Structural annotation	PF07409, COG4381	NA	NA
UHGV-0077439_39	PHROG	phrog_6	baseplate protein	tail
UHGV-0077439_39	UniRef90	UniRef90_A0A5B7ZKF1	Baseplate J/gp47 family protein	NA
UHGV-0077439_39	eggNOG-mapper	742821.HMPREF9464_01817	Baseplate J family protein	NA
UHGV-0077439_39	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0077439_39	COG	COG3299	NA	NA
UHGV-0077439_39	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0077439_40	PHROG	phrog_203	tail protein	tail
UHGV-0077439_40	UniRef90	UniRef90_UPI000F60B3C5	NA	NA
UHGV-0077439_40	eggNOG-mapper	1278073.MYSTI_01917	NA	NA
UHGV-0077439_40	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0077439_40	COG	COG3778	NA	NA
UHGV-0077439_40	Structural annotation	PF10076, COG3778	NA	NA
UHGV-0077439_41	PHROG	phrog_1858	tail fiber protein	tail
UHGV-0077439_41	UniRef90	UniRef90_UPI001ADE2C23	tail fiber protein	NA
UHGV-0077439_41	eggNOG-mapper	556269.ACDQ01000009_gene2025	Phage Tail Collar Domain	NA
UHGV-0077439_41	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0077439_41	COG	COG4675	Phage tail collar domain	NA
UHGV-0077439_41	Structural annotation	PF07484, COG4675	NA	NA
UHGV-0077439_43	eggNOG-mapper	556269.ACDQ01000006_gene1696	Phage Tail Collar Domain	NA
UHGV-0077439_43	COG	COG4675	Phage tail collar domain	NA