UHGV-0077458

Genome information

Genome length 29,891 bps

CDS count 45

Completeness 84.63% (medium-quality)

geNomad score 0.9823

Prediction confidence Confident

Genome information
Genome ID	UHGV-0077458
vOTU ID	vOTU-041636
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_139509
BioSample	SAMEA2737830
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.63% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9823
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.45
Jumbo phage	No

Genome content
Genome length	29,891 bps
GC content	42.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	92.55%
Average CDS length	619.07 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0077458_1	KOfam	K19117	csd1, cas8c; CRISPR-associated protein Csd1	NA
UHGV-0077458_1	UniRef90	UniRef90_UPI001EDE3A19	type I-C CRISPR-associated protein Cas8c/Csd1	NA
UHGV-0077458_1	eggNOG-mapper	1122919.KB905548_gene2302	CRISPR-associated protein (Cas_Csd1)	NA
UHGV-0077458_1	PADLOC	cd09757	CAS-I-C; effector_LS	CRISPR-CAS
UHGV-0077458_1	Pfam	PF09709	CRISPR-associated protein (Cas_Csd1)	Cas_Csd1
UHGV-0077458_1	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0077458_2	AcrCatalog	cluster_11486	NA	NA
UHGV-0077458_3	KOfam	K07273	acm; lysozyme	NA
UHGV-0077458_3	PHROG	phrog_291	endolysin	lysis
UHGV-0077458_3	UniRef90	UniRef90_D4M5A7	Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0077458_3	eggNOG-mapper	33035.JPJF01000043_gene994	Glycosyl hydrolases family 25	NA
UHGV-0077458_3	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0077458_3	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0077458_3	Structural annotation	PF01183, NF003627, COG3757, COG5492	NA	NA
UHGV-0077458_4	Structural annotation	PF13384, NF001074, COG3677	NA	NA
UHGV-0077458_5	PHROG	phrog_37799	NA	unknown function
UHGV-0077458_5	UniRef90	UniRef90_A0A373N7C7	Protein utxA	NA
UHGV-0077458_5	eggNOG-mapper	411470.RUMGNA_02086	NA	NA
UHGV-0077458_5	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0077458_5	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0077458_5	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0077458_5	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0077458_6	PHROG	phrog_20274	NA	unknown function
UHGV-0077458_6	UniRef90	UniRef90_A0A173TUK0	Predicted membrane protein	NA
UHGV-0077458_6	eggNOG-mapper	1235799.C818_04238	Putative ABC-transporter type IV	NA
UHGV-0077458_6	Pfam	PF06541	Putative ABC-transporter type IV	ABC_trans_CmpB
UHGV-0077458_6	COG	COG4905	NA	NA
UHGV-0077458_6	Structural annotation	PF06541, COG4905	NA	NA
UHGV-0077458_7	UniRef90	UniRef90_UPI001C0C21D5	acyl carrier protein	NA
UHGV-0077458_7	eggNOG-mapper	1235799.C818_04237	NA	NA
UHGV-0077458_7	Structural annotation	PF14301	NA	NA
UHGV-0077458_8	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0077458_8	UniRef90	UniRef90_UPI001A9A6571	collagen-like protein	NA
UHGV-0077458_8	eggNOG-mapper	877414.ATWA01000019_gene2051	NA	NA
UHGV-0077458_8	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0077458_10	KOfam	K07296	ADIPOQ, ACDC; adiponectin	NA
UHGV-0077458_10	PHROG	phrog_10972	tail fiber protein	tail
UHGV-0077458_10	UniRef90	UniRef90_A0A374E9Q0	Collagen-like protein	NA
UHGV-0077458_10	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0077458_10	Structural annotation	PF10651, NF007636, COG5456	NA	NA
UHGV-0077458_11	PHROG	phrog_11037	NA	unknown function
UHGV-0077458_11	UniRef90	UniRef90_A0A373N7H3	Peptidase M23	NA
UHGV-0077458_11	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0077458_11	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0077458_11	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0077458_11	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0077458_11	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0077458_12	PHROG	phrog_13289	tail protein	tail
UHGV-0077458_12	UniRef90	UniRef90_A0A373N6D1	Prophage_tail domain-containing protein	NA
UHGV-0077458_12	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0077458_12	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0077458_12	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0077458_12	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0077458_12	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0077458_13	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0077458_13	UniRef90	UniRef90_UPI000E50043B	phage tail protein	NA
UHGV-0077458_13	eggNOG-mapper	1235798.C817_04593	phage tail	NA
UHGV-0077458_13	COG	COG4722	Phage-related protein YomH	NA
UHGV-0077458_13	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0077458_14	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0077458_14	UniRef90	UniRef90_A0A373N7M8	PhageMin_Tail domain-containing protein	NA
UHGV-0077458_14	eggNOG-mapper	1035184.HMPREF1042_1328	Phage tail tape measure protein	NA
UHGV-0077458_14	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0077458_14	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0077458_14	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0077458_17	PHROG	phrog_88	major tail protein	tail
UHGV-0077458_17	UniRef90	UniRef90_D4M596	Phage major tail protein, phi13 family	NA
UHGV-0077458_17	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0077458_17	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0077458_17	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0077458_18	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0077458_18	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-0077458_18	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0077458_18	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0077458_19	Structural annotation	PF05657	NA	NA
UHGV-0077458_20	UniRef90	UniRef90_D4M593	Phage head-tail adaptor, putative, SPP1 family	NA
UHGV-0077458_20	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0077458_21	PHROG	phrog_749	NA	unknown function
UHGV-0077458_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-0077458_22	UniRef90	UniRef90_D4M591	Phage capsid family	NA
UHGV-0077458_22	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-0077458_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0077458_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0077458_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0077458_22	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-0077458_23	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0077458_23	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0077458_23	UniRef90	UniRef90_D4M590	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0077458_23	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0077458_23	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0077458_23	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0077458_23	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0077458_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-0077458_24	UniRef90	UniRef90_A0A844KEF3	Phage portal protein	NA
UHGV-0077458_24	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-0077458_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0077458_24	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0077458_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0077458_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0077458_25	UniRef90	UniRef90_D4M588	Phage terminase-like protein, large subunit	NA
UHGV-0077458_25	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-0077458_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0077458_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0077458_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0077458_25	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0077458_26	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0077458_26	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-0077458_26	eggNOG-mapper	1220589.CD32_01745	Phage terminase, small subunit	NA
UHGV-0077458_26	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0077458_26	COG	COG5484	NA	NA
UHGV-0077458_26	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0077458_27	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0077458_27	UniRef90	UniRef90_UPI0015F32291	HNH endonuclease	NA
UHGV-0077458_27	eggNOG-mapper	1405.DJ92_863	HNH endonuclease	NA
UHGV-0077458_27	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0077458_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0077458_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0077458_28	UniRef90	UniRef90_A0A373MNQ3	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0077458_28	eggNOG-mapper	658655.HMPREF0988_02569	sigma factor activity	NA
UHGV-0077458_28	Pfam	PF07374	NA	DUF1492
UHGV-0077458_28	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0077458_28	Structural annotation	PF07374, MF_00674, TIGR02984, COG1595	NA	NA
UHGV-0077458_30	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0077458_30	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0077458_30	UniRef90	UniRef90_A0A374E9Q7	XRE family transcriptional regulator	NA
UHGV-0077458_30	eggNOG-mapper	1048834.TC41_2515	sequence-specific DNA binding	NA
UHGV-0077458_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0077458_30	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0077458_33	PHROG	phrog_7566	NA	unknown function
UHGV-0077458_33	eggNOG-mapper	665950.HMPREF1025_02547	NA	NA
UHGV-0077458_34	eggNOG-mapper	1196322.A370_05726	NA	NA
UHGV-0077458_35	PHROG	phrog_15077	NA	unknown function
UHGV-0077458_35	UniRef90	UniRef90_A0A3A6HZA9	NA	NA
UHGV-0077458_35	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-0077458_35	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0077458_36	PHROG	phrog_8470	NA	unknown function
UHGV-0077458_36	UniRef90	UniRef90_UPI001C01E393	PcfJ domain-containing protein	NA
UHGV-0077458_36	eggNOG-mapper	1280698.AUJS01000007_gene1018	NA	NA
UHGV-0077458_36	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0077458_36	Structural annotation	PF14284	NA	NA
UHGV-0077458_37	PHROG	phrog_4433	NA	unknown function
UHGV-0077458_37	eggNOG-mapper	1280698.AUJS01000007_gene1017	NA	NA
UHGV-0077458_38	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-0077458_39	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0077458_39	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0077458_39	UniRef90	UniRef90_D4M578	Ribonuclease HI	NA
UHGV-0077458_39	eggNOG-mapper	665950.HMPREF1025_02551	RNase H	NA
UHGV-0077458_39	Pfam	PF00075	RNase H	RNase_H
UHGV-0077458_39	COG	COG0328	Ribonuclease HI	NA
UHGV-0077458_39	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0077458_40	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0077458_40	eggNOG-mapper	665950.HMPREF1025_02552	NA	NA
UHGV-0077458_40	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0077458_43	Structural annotation	PF20037, COG3212	NA	NA
UHGV-0077458_45	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0077458_45	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0077458_45	UniRef90	UniRef90_UPI0006C57785	helix-turn-helix domain-containing protein	NA
UHGV-0077458_45	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0077458_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0077458_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0077458_45	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA