UHGV-0077494

Genome information

Genome length 34,431 bps

CDS count 52

Completeness 81.63% (medium-quality)

geNomad score 0.9785

Prediction confidence Confident

Genome information
Genome ID	UHGV-0077494
vOTU ID	vOTU-038720
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_152128
BioSample	SAMEA2784503
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.63% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9785
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.71
Jumbo phage	No

Genome content
Genome length	34,431 bps
GC content	42.10%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	92.85%
Average CDS length	619.96 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0077494_1	PHROG	phrog_28785	NA	unknown function
UHGV-0077494_1	UniRef90	UniRef90_A0A415X3Y5	Peptidoglycan-binding protein	NA
UHGV-0077494_1	eggNOG-mapper	500632.CLONEX_03093	Peptidoglycan binding domain protein	NA
UHGV-0077494_1	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0077494_1	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0077494_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0077494_2	PHROG	phrog_95	integrase	integration and excision
UHGV-0077494_2	UniRef90	UniRef90_A0A285PUJ0	Resolvase, N terminal domain	NA
UHGV-0077494_2	eggNOG-mapper	1235792.C808_00048	Resolvase, N terminal domain	NA
UHGV-0077494_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0077494_2	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0077494_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0077494_2	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0077494_4	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0077494_4	UniRef90	UniRef90_UPI00157039CB	Abi family protein	NA
UHGV-0077494_4	eggNOG-mapper	476272.RUMHYD_02820	Abi-like protein	NA
UHGV-0077494_4	PADLOC	AbiD	AbiD	Abi
UHGV-0077494_4	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0077494_4	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0077494_4	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0077494_5	PHROG	phrog_20886	NA	unknown function
UHGV-0077494_5	UniRef90	UniRef90_UPI00164BB8FD	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0077494_5	eggNOG-mapper	861450.HMPREF0080_02020	NA	NA
UHGV-0077494_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0077494_5	Structural annotation	PF06114	NA	NA
UHGV-0077494_6	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0077494_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0077494_6	UniRef90	UniRef90_A0A1Y3TCK7	HTH cro/C1-type domain-containing protein	NA
UHGV-0077494_6	eggNOG-mapper	553973.CLOHYLEM_07297	Transcriptional	NA
UHGV-0077494_6	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0077494_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0077494_6	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0077494_6	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0077494_7	UniRef90	UniRef90_A0A3E2X387	XRE family transcriptional regulator	NA
UHGV-0077494_7	eggNOG-mapper	1132442.KB889752_gene869	Helix-turn-helix XRE-family like proteins	NA
UHGV-0077494_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0077494_7	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0077494_10	UniRef90	UniRef90_A0A416W0Y7	XRE family transcriptional regulator	NA
UHGV-0077494_10	eggNOG-mapper	411461.DORFOR_00030	Helix-turn-helix XRE-family like proteins	NA
UHGV-0077494_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0077494_10	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0077494_12	PHROG	phrog_750	NA	unknown function
UHGV-0077494_12	eggNOG-mapper	742723.HMPREF9477_00931	NA	NA
UHGV-0077494_12	Structural annotation	PF13835, NF040858	NA	NA
UHGV-0077494_14	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0077494_15	Structural annotation	PF12286, MF_00839, NF007780	NA	NA
UHGV-0077494_16	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0077494_16	PHROG	phrog_17417	NA	unknown function
UHGV-0077494_16	UniRef90	UniRef90_A0A416INU5	Cell wall hydrolase	NA
UHGV-0077494_16	eggNOG-mapper	742733.HMPREF9469_05073	Cell Wall Hydrolase	NA
UHGV-0077494_16	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0077494_16	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0077494_16	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0077494_17	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0077494_17	eggNOG-mapper	1235800.C819_02258	NA	NA
UHGV-0077494_17	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0077494_18	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0077494_18	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0077494_18	UniRef90	UniRef90_A0A3R6KTE4	RNase H type-1 domain-containing protein	NA
UHGV-0077494_18	eggNOG-mapper	643648.Slip_0653	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0077494_18	Pfam	PF00075	RNase H	RNase_H
UHGV-0077494_18	COG	COG0328	Ribonuclease HI	NA
UHGV-0077494_18	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0077494_19	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-0077494_20	PHROG	phrog_8470	NA	unknown function
UHGV-0077494_20	UniRef90	UniRef90_UPI00164CA24C	PcfJ domain-containing protein	NA
UHGV-0077494_20	eggNOG-mapper	97139.C824_00039	PcfJ-like protein	NA
UHGV-0077494_20	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0077494_20	Structural annotation	PF14284	NA	NA
UHGV-0077494_21	PHROG	phrog_15077	NA	unknown function
UHGV-0077494_21	UniRef90	UniRef90_A5ZPN2	NA	NA
UHGV-0077494_21	eggNOG-mapper	999413.HMPREF1094_04706	NA	NA
UHGV-0077494_21	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0077494_23	UniRef90	UniRef90_A0A355TJG3	ASCH domain-containing protein	NA
UHGV-0077494_23	eggNOG-mapper	397290.C810_00411	ASCH domain	NA
UHGV-0077494_23	Pfam	PF04266	ASCH domain	ASCH
UHGV-0077494_23	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0077494_23	Structural annotation	PF08819, MF_00684, NF003443, COG4933	NA	NA
UHGV-0077494_25	PHROG	phrog_21026	NA	unknown function
UHGV-0077494_26	Pfam	PF14359	NA	DUF4406
UHGV-0077494_27	UniRef90	UniRef90_A0A417WAJ1	HNH endonuclease	NA
UHGV-0077494_27	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0077494_28	Structural annotation	NF011508	NA	NA
UHGV-0077494_31	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0077494_31	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0077494_31	UniRef90	UniRef90_A0A3D2KJS5	Phage portal protein	NA
UHGV-0077494_31	eggNOG-mapper	411490.ANACAC_00784	terminase, small subunit	NA
UHGV-0077494_31	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0077494_31	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0077494_31	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0077494_31	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0077494_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0077494_32	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0077494_32	UniRef90	UniRef90_A0A6L5YJQ3	PBSX family phage terminase large subunit	NA
UHGV-0077494_32	eggNOG-mapper	397290.C810_05187	Phage terminase large subunit	NA
UHGV-0077494_32	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0077494_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0077494_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0077494_32	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0077494_33	PHROG	phrog_533	portal protein	head and packaging
UHGV-0077494_33	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0077494_33	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0077494_33	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0077494_34	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0077494_34	UniRef90	UniRef90_UPI000E4A8F9F	minor capsid protein	NA
UHGV-0077494_34	eggNOG-mapper	1120746.CCNL01000014_gene2100	Minor capsid protein	NA
UHGV-0077494_34	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0077494_34	Structural annotation	PF11114	NA	NA
UHGV-0077494_35	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0077494_35	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-0077494_35	eggNOG-mapper	663278.Ethha_0091	NA	NA
UHGV-0077494_35	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0077494_35	COG	COG2369	NA	NA
UHGV-0077494_35	Structural annotation	PF06152	NA	NA
UHGV-0077494_36	UniRef90	UniRef90_R6BU26	Peptidyl-dipeptidase Dcp	NA
UHGV-0077494_37	PHROG	phrog_3675	NA	unknown function
UHGV-0077494_37	UniRef90	UniRef90_UPI001C02868E	YjcQ family protein	NA
UHGV-0077494_37	eggNOG-mapper	1235799.C818_04221	YjcQ protein	NA
UHGV-0077494_37	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0077494_37	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0077494_38	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0077494_38	UniRef90	UniRef90_UPI000E538A87	phage scaffolding protein	NA
UHGV-0077494_38	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0077494_38	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0077494_39	PHROG	phrog_283	major head protein	head and packaging
UHGV-0077494_39	UniRef90	UniRef90_A0A173REC9	p22 coat protein-gene protein 5	NA
UHGV-0077494_39	eggNOG-mapper	411461.DORFOR_01167	P22 coat protein - gene protein 5	NA
UHGV-0077494_39	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0077494_39	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0077494_40	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0077494_40	eggNOG-mapper	536233.CLO_0887	NA	NA
UHGV-0077494_41	PHROG	phrog_3366	NA	unknown function
UHGV-0077494_41	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0077494_41	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0077494_42	PHROG	phrog_3266	tail completion	connector
UHGV-0077494_42	Structural annotation	PF12691	NA	NA
UHGV-0077494_43	PHROG	phrog_3099	NA	unknown function
UHGV-0077494_43	eggNOG-mapper	397290.C810_05233	NA	NA
UHGV-0077494_43	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0077494_44	PHROG	phrog_11299	NA	unknown function
UHGV-0077494_44	UniRef90	UniRef90_A0A6L5YI08	RNA polymerase subunit sigma	NA
UHGV-0077494_44	Pfam	PF20378	NA	DUF6673
UHGV-0077494_45	PHROG	phrog_706	NA	unknown function
UHGV-0077494_45	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-0077494_45	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0077494_45	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0077494_45	Structural annotation	PF06854	NA	NA
UHGV-0077494_46	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0077494_46	eggNOG-mapper	1235800.C819_00476	tape measure	NA
UHGV-0077494_46	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0077494_47	PHROG	phrog_1194	NA	unknown function
UHGV-0077494_47	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-0077494_47	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0077494_48	PHROG	phrog_13879	NA	unknown function
UHGV-0077494_48	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-0077494_48	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0077494_50	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0077494_50	PHROG	phrog_11157	NA	unknown function
UHGV-0077494_50	UniRef90	UniRef90_A0A416HMQ3	Big_13 domain-containing protein	NA
UHGV-0077494_50	eggNOG-mapper	1286171.EAL2_c11220	amine dehydrogenase activity	NA
UHGV-0077494_50	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0077494_50	COG	COG3391	DNA-binding beta-propeller fold protein YncE	NA
UHGV-0077494_50	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0077494_51	PHROG	phrog_18725	NA	unknown function
UHGV-0077494_51	Structural annotation	PF13754, COG2372	NA	NA
UHGV-0077494_52	COG	COG5301	Phage-related tail fiber protein	NA