UHGV-0077499

Genome information

Genome length 38,823 bps

CDS count 48

Completeness 99.90% (high-quality)

geNomad score 0.9783

Prediction confidence Confident

Genome information
Genome ID	UHGV-0077499
vOTU ID	vOTU-009826
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_167102
BioSample	SAMEA3136685
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9783
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.22
Jumbo phage	No

Genome content
Genome length	38,823 bps
GC content	38.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	89.96%
Average CDS length	730.19 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0077499_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0077499_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0077499_1	UniRef90	UniRef90_D4MVK2	Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0077499_1	eggNOG-mapper	658088.HMPREF0987_00026	Recombinase	NA
UHGV-0077499_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0077499_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0077499_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0077499_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0077499_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0077499_2	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0077499_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0077499_2	UniRef90	UniRef90_A0A415YC32	XRE family transcriptional regulator	NA
UHGV-0077499_2	eggNOG-mapper	742741.HMPREF9475_00399	Helix-turn-helix XRE-family like proteins	NA
UHGV-0077499_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0077499_2	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0077499_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0077499_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0077499_4	UniRef90	UniRef90_A0A415YC34	XRE family transcriptional regulator	NA
UHGV-0077499_4	eggNOG-mapper	411470.RUMGNA_02181	DNA-binding helix-turn-helix protein	NA
UHGV-0077499_4	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0077499_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0077499_4	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0077499_6	Structural annotation	PF07875	NA	NA
UHGV-0077499_12	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0077499_12	eggNOG-mapper	1196322.A370_05744	NA	NA
UHGV-0077499_12	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0077499_13	PHROG	phrog_824	NA	unknown function
UHGV-0077499_13	UniRef90	UniRef90_A0A5B3G7E5	VRR-NUC domain-containing protein	NA
UHGV-0077499_13	eggNOG-mapper	610130.Closa_0716	VRR_NUC	NA
UHGV-0077499_13	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0077499_14	Structural annotation	PF14084	NA	NA
UHGV-0077499_16	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0077499_16	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0077499_16	UniRef90	UniRef90_A0A174C0J7	Sporulation initiation inhibitor protein soj	NA
UHGV-0077499_16	eggNOG-mapper	411470.RUMGNA_00210	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-0077499_16	Pfam	PF13614	AAA domain	AAA_31
UHGV-0077499_16	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0077499_16	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0077499_17	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0077499_17	PHROG	phrog_15982	NA	unknown function
UHGV-0077499_17	UniRef90	UniRef90_A0A417V0R1	NA	NA
UHGV-0077499_17	eggNOG-mapper	1232453.BAIF02000028_gene2716	ParB-like nuclease domain	NA
UHGV-0077499_17	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0077499_17	Pfam	PF12961	NA	DUF3850
UHGV-0077499_17	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0077499_17	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0077499_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0077499_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0077499_19	UniRef90	UniRef90_A0A174C0A5	Single-stranded DNA-binding protein	NA
UHGV-0077499_19	eggNOG-mapper	411469.EUBHAL_00362	Single-stranded DNA-binding protein	NA
UHGV-0077499_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0077499_19	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0077499_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0077499_19	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0077499_21	UniRef90	UniRef90_D4MVM1	Transposase	NA
UHGV-0077499_21	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-0077499_21	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0077499_21	Structural annotation	PF01710, NF040595, COG3415	NA	NA
UHGV-0077499_22	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0077499_22	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0077499_22	UniRef90	UniRef90_L1Q0F3	DNA-binding helix-turn-helix protein	NA
UHGV-0077499_22	eggNOG-mapper	658088.HMPREF0987_01150	Helix-turn-helix XRE-family like proteins	NA
UHGV-0077499_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0077499_22	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0077499_24	PHROG	phrog_30258	NA	unknown function
UHGV-0077499_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0077499_25	UniRef90	UniRef90_UPI001CD68077	NA	NA
UHGV-0077499_25	eggNOG-mapper	1235800.C819_02243	NA	NA
UHGV-0077499_25	Pfam	PF07374	NA	DUF1492
UHGV-0077499_25	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0077499_26	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0077499_26	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0077499_26	UniRef90	UniRef90_R5TPY3	Phage related protein	NA
UHGV-0077499_26	eggNOG-mapper	1235792.C808_00081	HNH nucleases	NA
UHGV-0077499_26	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0077499_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0077499_27	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0077499_27	UniRef90	UniRef90_UPI001A9A3020	P27 family phage terminase small subunit	NA
UHGV-0077499_27	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0077499_28	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0077499_28	UniRef90	UniRef90_A0A4R3JPR8	Phage terminase large subunit-like protein	NA
UHGV-0077499_28	eggNOG-mapper	610130.Closa_0741	Phage Terminase	NA
UHGV-0077499_28	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0077499_28	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0077499_28	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0077499_28	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0077499_29	PHROG	phrog_12	portal protein	head and packaging
UHGV-0077499_29	UniRef90	UniRef90_R5TQ78	Phage portal protein HK97 family	NA
UHGV-0077499_29	eggNOG-mapper	610130.Closa_0742	Phage portal protein, HK97 family	NA
UHGV-0077499_29	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0077499_29	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0077499_29	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0077499_29	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0077499_30	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0077499_30	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0077499_30	UniRef90	UniRef90_D9R5G2	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0077499_30	eggNOG-mapper	610130.Closa_0743	Clp protease	NA
UHGV-0077499_30	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0077499_30	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0077499_30	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0077499_31	PHROG	phrog_10	major head protein	head and packaging
UHGV-0077499_31	UniRef90	UniRef90_A0A3E4M759	Phage major capsid protein	NA
UHGV-0077499_31	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0077499_31	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0077499_31	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0077499_31	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0077499_31	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0077499_31	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0077499_32	PHROG	phrog_749	NA	unknown function
UHGV-0077499_32	eggNOG-mapper	1235792.C808_00087	NA	NA
UHGV-0077499_33	PHROG	phrog_19734	NA	unknown function
UHGV-0077499_33	UniRef90	UniRef90_UPI001EE7A060	phage head closure protein	NA
UHGV-0077499_33	eggNOG-mapper	1235792.C808_00088	NA	NA
UHGV-0077499_33	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0077499_34	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0077499_34	UniRef90	UniRef90_D9R5G6	Prophage pi2 protein 37	NA
UHGV-0077499_34	eggNOG-mapper	610130.Closa_0747	COG NOG18351 non supervised orthologous group	NA
UHGV-0077499_34	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0077499_34	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0077499_35	PHROG	phrog_78	tail terminator	connector
UHGV-0077499_35	eggNOG-mapper	610130.Closa_0748	NA	NA
UHGV-0077499_35	Structural annotation	PF20765	NA	NA
UHGV-0077499_36	PHROG	phrog_88	major tail protein	tail
UHGV-0077499_36	UniRef90	UniRef90_D9R5G8	Phage major tail protein, phi13 family	NA
UHGV-0077499_36	eggNOG-mapper	610130.Closa_0749	phage major tail protein, phi13 family	NA
UHGV-0077499_36	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0077499_36	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0077499_37	PHROG	phrog_709	NA	unknown function
UHGV-0077499_37	eggNOG-mapper	879305.HMPREF9290_0132	NA	NA
UHGV-0077499_37	Structural annotation	PF11836	NA	NA
UHGV-0077499_38	PHROG	phrog_3033	NA	unknown function
UHGV-0077499_38	eggNOG-mapper	1341157.RF007C_02605	NA	NA
UHGV-0077499_40	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0077499_40	UniRef90	UniRef90_A0A1H0WFV4	Phage-related minor tail protein (Fragment)	NA
UHGV-0077499_40	eggNOG-mapper	411468.CLOSCI_00194	Phage tail tape measure protein, TP901 family	NA
UHGV-0077499_40	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0077499_40	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0077499_40	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-0077499_41	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0077499_41	UniRef90	UniRef90_UPI000E2F9A85	phage tail family protein	NA
UHGV-0077499_41	eggNOG-mapper	1235798.C817_04593	phage tail	NA
UHGV-0077499_41	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0077499_41	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0077499_41	COG	COG4722	Phage-related protein YomH	NA
UHGV-0077499_41	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0077499_42	PHROG	phrog_13289	tail protein	tail
UHGV-0077499_42	UniRef90	UniRef90_A0A1C6ES47	Phage-related protein	NA
UHGV-0077499_42	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0077499_42	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0077499_42	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0077499_42	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0077499_42	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0077499_43	PHROG	phrog_24896	NA	unknown function
UHGV-0077499_43	UniRef90	UniRef90_UPI000F63139C	NA	NA
UHGV-0077499_43	eggNOG-mapper	657322.FPR_22010	NA	NA
UHGV-0077499_43	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0077499_43	Pfam	PF19789	NA	DUF6273
UHGV-0077499_43	Structural annotation	PF19789, PF08757, PF13385, PF02010, MF_04116, NF011735, NF033188, COG3121	NA	NA
UHGV-0077499_44	PHROG	phrog_30516	NA	unknown function
UHGV-0077499_44	Pfam	PF05635	23S rRNA-intervening sequence protein	23S_rRNA_IVP
UHGV-0077499_44	Structural annotation	PF05635, NF008911	NA	NA
UHGV-0077499_45	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0077499_45	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0077499_45	UniRef90	UniRef90_A0A3D5EUG8	Reverse transcriptase domain-containing protein	NA
UHGV-0077499_45	eggNOG-mapper	1410650.JHWL01000003_gene2820	Reverse transcriptase	NA
UHGV-0077499_45	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0077499_45	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0077499_45	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0077499_45	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0077499_46	UniRef90	UniRef90_A0A3A9BMT2	Acyl carrier protein	NA
UHGV-0077499_46	eggNOG-mapper	411902.CLOBOL_05646	NA	NA
UHGV-0077499_46	Structural annotation	PF14301	NA	NA
UHGV-0077499_47	PHROG	phrog_199	holin	lysis
UHGV-0077499_47	UniRef90	UniRef90_A0A1Q2CAY6	Holin	NA
UHGV-0077499_47	eggNOG-mapper	742723.HMPREF9477_00889	Bacteriophage holin family	NA
UHGV-0077499_47	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0077499_47	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0077499_47	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0077499_47	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0077499_48	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0077499_48	PHROG	phrog_435	endolysin	lysis
UHGV-0077499_48	UniRef90	UniRef90_A0A415YC07	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0077499_48	eggNOG-mapper	411490.ANACAC_00597	Cell wall hydrolase autolysin	NA
UHGV-0077499_48	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0077499_48	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0077499_48	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA