UHGV-0077518

Genome information

Genome length 38,365 bps

CDS count 62

Completeness 100.00% (complete)

geNomad score 0.9799

Prediction confidence Confident

Genome information
Genome ID	UHGV-0077518
vOTU ID	vOTU-045133
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_153640
BioSample	NA
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9799
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.4
Jumbo phage	No

Genome content
Genome length	38,365 bps
GC content	59.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	93.12%
Average CDS length	581.61 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0077518_1	UniRef90	UniRef90_UPI001F232519	cysteine-rich KTR domain-containing protein	NA
UHGV-0077518_1	eggNOG-mapper	1226322.HMPREF1545_00110	Cysteine-rich KTR	NA
UHGV-0077518_1	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0077518_2	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0077518_2	UniRef90	UniRef90_UPI001EDE5545	HNH endonuclease	NA
UHGV-0077518_2	eggNOG-mapper	693746.OBV_19960	HNH endonuclease	NA
UHGV-0077518_2	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0077518_2	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0077518_2	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0077518_3	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0077518_3	PHROG	phrog_21498	NA	unknown function
UHGV-0077518_3	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-0077518_3	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0077518_3	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0077518_3	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0077518_3	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0077518_3	Structural annotation	PF02195, MF_02015, TIGR04285, TIGR01712, COG1475	NA	NA
UHGV-0077518_4	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0077518_4	UniRef90	UniRef90_UPI001EDE2A13	phage terminase small subunit P27 family	NA
UHGV-0077518_4	eggNOG-mapper	1007096.BAGW01000012_gene2373	Phage terminase, small subunit	NA
UHGV-0077518_4	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0077518_4	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0077518_4	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0077518_4	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0077518_5	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0077518_5	UniRef90	UniRef90_A0A845R4S1	Terminase large subunit	NA
UHGV-0077518_5	eggNOG-mapper	742738.HMPREF9460_00872	Phage Terminase	NA
UHGV-0077518_5	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0077518_5	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0077518_5	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0077518_5	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0077518_7	PHROG	phrog_12	portal protein	head and packaging
UHGV-0077518_7	UniRef90	UniRef90_A0A845R2J9	Phage portal protein	NA
UHGV-0077518_7	eggNOG-mapper	397288.C806_01508	Phage portal protein	NA
UHGV-0077518_7	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0077518_7	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0077518_7	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0077518_7	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0077518_8	PHROG	phrog_16951	NA	unknown function
UHGV-0077518_8	UniRef90	UniRef90_R6LX42	PE-PGRS family protein	NA
UHGV-0077518_8	eggNOG-mapper	742738.HMPREF9460_04070	NA	NA
UHGV-0077518_8	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0077518_9	PHROG	phrog_10	major head protein	head and packaging
UHGV-0077518_9	UniRef90	UniRef90_A0A1Y4RLC8	Phage major capsid protein	NA
UHGV-0077518_9	eggNOG-mapper	469616.FMAG_00561	Phage capsid family	NA
UHGV-0077518_9	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0077518_9	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0077518_9	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0077518_9	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0077518_10	UniRef90	UniRef90_UPI001C018007	head-tail connector protein	NA
UHGV-0077518_10	eggNOG-mapper	742738.HMPREF9460_00878	NA	NA
UHGV-0077518_10	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0077518_10	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0077518_11	PHROG	phrog_25	head closure Hc1	connector
UHGV-0077518_11	UniRef90	UniRef90_UPI001898DBDF	phage head closure protein	NA
UHGV-0077518_11	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0077518_11	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0077518_11	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0077518_11	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0077518_12	UniRef90	UniRef90_A0A4S2AEF8	Phage tail protein	NA
UHGV-0077518_12	eggNOG-mapper	1203606.HMPREF1526_00975	NA	NA
UHGV-0077518_12	Structural annotation	PF05657	NA	NA
UHGV-0077518_13	eggNOG-mapper	1203606.HMPREF1526_00974	NA	NA
UHGV-0077518_13	Structural annotation	TIGR01725	NA	NA
UHGV-0077518_14	PHROG	phrog_88	major tail protein	tail
UHGV-0077518_14	UniRef90	UniRef90_R5EB96	Phage major tail protein phi13 family	NA
UHGV-0077518_14	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0077518_16	PHROG	phrog_23464	NA	unknown function
UHGV-0077518_16	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-0077518_16	COG	COG5412	Phage-related protein	NA
UHGV-0077518_16	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0077518_18	PHROG	phrog_32744	NA	unknown function
UHGV-0077518_18	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0077518_18	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0077518_19	PHROG	phrog_3904	tail fiber protein	tail
UHGV-0077518_19	eggNOG-mapper	1226322.HMPREF1545_00064	NA	NA
UHGV-0077518_20	PHROG	phrog_4105	NA	unknown function
UHGV-0077518_20	eggNOG-mapper	428125.CLOLEP_01431	NA	NA
UHGV-0077518_21	PHROG	phrog_13256	NA	unknown function
UHGV-0077518_21	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0077518_23	PHROG	phrog_18955	NA	unknown function
UHGV-0077518_23	UniRef90	UniRef90_UPI00164D2830	phosphodiester glycosidase family protein	NA
UHGV-0077518_23	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0077518_23	COG	COG4632	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	NA
UHGV-0077518_23	Structural annotation	PF09992, COG4632	NA	NA
UHGV-0077518_24	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0077518_24	PHROG	phrog_894	endolysin	lysis
UHGV-0077518_24	UniRef90	UniRef90_K1TJK4	Peptidase_M15_3 domain-containing protein (Fragment)	NA
UHGV-0077518_24	eggNOG-mapper	1235797.C816_04171	Peptidase M15	NA
UHGV-0077518_24	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0077518_24	COG	COG3108	NA	NA
UHGV-0077518_24	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0077518_26	Structural annotation	PF01402, NF008671	NA	NA
UHGV-0077518_33	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0077518_35	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0077518_36	KOfam	K14059	int; integrase	NA
UHGV-0077518_36	PHROG	phrog_1	integrase	integration and excision
UHGV-0077518_36	UniRef90	UniRef90_A0A1H8A220	Site-specific recombinase XerD	NA
UHGV-0077518_36	eggNOG-mapper	693746.OBV_01970	Phage integrase family	NA
UHGV-0077518_36	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0077518_36	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0077518_36	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0077518_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0077518_37	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0077518_37	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0077518_38	eggNOG-mapper	742741.HMPREF9475_00398	NA	NA
UHGV-0077518_40	UniRef90	UniRef90_UPI001E54DE4F	helix-turn-helix domain-containing protein	NA
UHGV-0077518_40	eggNOG-mapper	1226322.HMPREF1545_00148	Transcriptional	NA
UHGV-0077518_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0077518_40	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0077518_41	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0077518_41	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0077518_41	UniRef90	UniRef90_UPI00030EB95F	helix-turn-helix domain-containing protein	NA
UHGV-0077518_41	eggNOG-mapper	1007096.BAGW01000011_gene2356	sequence-specific DNA binding	NA
UHGV-0077518_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0077518_41	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0077518_41	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0077518_42	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0077518_43	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0077518_43	UniRef90	UniRef90_UPI001C01DF91	helix-turn-helix transcriptional regulator	NA
UHGV-0077518_43	eggNOG-mapper	1226322.HMPREF1545_00092	Helix-turn-helix XRE-family like proteins	NA
UHGV-0077518_43	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0077518_43	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0077518_43	Structural annotation	PF01381, NF040522, COG1476	NA	NA
UHGV-0077518_44	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0077518_44	UniRef90	UniRef90_UPI0006877B23	helix-turn-helix domain-containing protein	NA
UHGV-0077518_44	eggNOG-mapper	1007096.BAGW01000033_gene1617	ROK family	NA
UHGV-0077518_44	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0077518_44	COG	COG3355	Predicted transcriptional regulator	NA
UHGV-0077518_44	Structural annotation	PF02295, MF_01819, TIGR04176, COG3355	NA	NA
UHGV-0077518_45	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0077518_45	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0077518_45	UniRef90	UniRef90_UPI001BB47D1B	AAA family ATPase	NA
UHGV-0077518_45	eggNOG-mapper	693746.OBV_19840	DnaB-like helicase C terminal domain	NA
UHGV-0077518_45	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0077518_45	COG	COG0305	Replicative DNA helicase	NA
UHGV-0077518_45	Structural annotation	PF03796, MF_04154, NF006606, COG0467	NA	NA
UHGV-0077518_47	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0077518_47	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0077518_47	UniRef90	UniRef90_UPI001BB48231	ParA family protein	NA
UHGV-0077518_47	eggNOG-mapper	693746.OBV_19850	Anion-transporting ATPase	NA
UHGV-0077518_47	Pfam	PF13614	AAA domain	AAA_31
UHGV-0077518_47	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0077518_47	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0077518_48	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0077518_48	PHROG	phrog_27290	NA	unknown function
UHGV-0077518_48	UniRef90	UniRef90_UPI00195EFCA8	helix-turn-helix domain-containing protein	NA
UHGV-0077518_48	eggNOG-mapper	742738.HMPREF9460_00856	ParB-like nuclease domain	NA
UHGV-0077518_48	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0077518_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0077518_48	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0077518_48	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0077518_52	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0077518_52	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0077518_52	UniRef90	UniRef90_UPI001C02B0E9	single-stranded DNA-binding protein	NA
UHGV-0077518_52	eggNOG-mapper	1226322.HMPREF1545_04080	Single-strand binding protein family	NA
UHGV-0077518_52	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0077518_52	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0077518_52	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0077518_52	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0077518_52	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0077518_55	KOfam	K17398	DNMT3A; DNA (cytosine-5)-methyltransferase 3A [EC:2.1.1.37]	NA
UHGV-0077518_55	PHROG	phrog_17284	NA	unknown function
UHGV-0077518_55	UniRef90	UniRef90_UPI001EDDC2F3	DNA cytosine methyltransferase	NA
UHGV-0077518_55	eggNOG-mapper	1235797.C816_01614	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0077518_55	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0077518_55	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0077518_55	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0077518_56	UniRef90	UniRef90_A0A845MZZ9	NA	NA
UHGV-0077518_56	Pfam	PF04448	NA	DUF551
UHGV-0077518_58	Structural annotation	PF06657	NA	NA
UHGV-0077518_60	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0077518_60	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0077518_60	UniRef90	UniRef90_UPI001D087498	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0077518_60	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0077518_60	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0077518_60	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0077518_60	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0077518_62	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0077518_62	eggNOG-mapper	693746.OBV_19950	NA	NA
UHGV-0077518_62	Structural annotation	PF21578, NF041486	NA	NA