UHGV-0077533

Genome information

Genome length 36,231 bps

CDS count 56

Completeness 99.03% (high-quality)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-0077533
vOTU ID	vOTU-008046
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_166162
BioSample	NA
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.03% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	28
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	66.83
Jumbo phage	No

Genome content
Genome length	36,231 bps
GC content	38.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	91.54%
Average CDS length	594.48 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0077533_1	eggNOG-mapper	633147.Olsu_1237	NA	NA
UHGV-0077533_2	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0077533_2	PHROG	phrog_435	endolysin	lysis
UHGV-0077533_2	UniRef90	UniRef90_UPI001EE924D3	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0077533_2	eggNOG-mapper	552396.HMPREF0863_00263	hmm pf01520	NA
UHGV-0077533_2	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0077533_2	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0077533_2	Structural annotation	PF01520, PF18342, MF_00417, TIGR02883, COG0860, COG4991	NA	NA
UHGV-0077533_3	PHROG	phrog_774	NA	unknown function
UHGV-0077533_3	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0077533_4	PHROG	phrog_918	NA	unknown function
UHGV-0077533_4	UniRef90	UniRef90_UPI00164AB9AF	NA	NA
UHGV-0077533_4	eggNOG-mapper	1504823.CCMM01000008_gene1021	NA	NA
UHGV-0077533_4	Pfam	PF19791	NA	DUF6275
UHGV-0077533_4	Structural annotation	PF19791	NA	NA
UHGV-0077533_5	PHROG	phrog_199	holin	lysis
UHGV-0077533_5	UniRef90	UniRef90_E2NU60	Toxin secretion/phage lysis holin	NA
UHGV-0077533_5	eggNOG-mapper	742723.HMPREF9477_00889	Bacteriophage holin family	NA
UHGV-0077533_5	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0077533_5	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0077533_5	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0077533_5	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0077533_6	PHROG	phrog_372	tail protein	tail
UHGV-0077533_6	UniRef90	UniRef90_UPI0006C32325	NA	NA
UHGV-0077533_6	eggNOG-mapper	1211844.CBLM010000016_gene1479	NA	NA
UHGV-0077533_6	Pfam	PF05895	NA	DUF859
UHGV-0077533_6	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0077533_7	PHROG	phrog_18110	NA	unknown function
UHGV-0077533_7	eggNOG-mapper	411465.PEPMIC_00746	Prophage endopeptidase tail	NA
UHGV-0077533_7	COG	COG4926	Phage-related protein	NA
UHGV-0077533_8	PHROG	phrog_30133	virion structural protein	head and packaging
UHGV-0077533_8	UniRef90	UniRef90_I7ARM6	NA	NA
UHGV-0077533_8	eggNOG-mapper	1504823.CCMM01000008_gene1029	NA	NA
UHGV-0077533_8	Structural annotation	PF14874, NF038186	NA	NA
UHGV-0077533_9	PHROG	phrog_15074	NA	unknown function
UHGV-0077533_9	eggNOG-mapper	445974.CLORAM_02919	cellulase activity	NA
UHGV-0077533_9	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0077533_9	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0077533_10	PHROG	phrog_1194	NA	unknown function
UHGV-0077533_10	eggNOG-mapper	1504823.CCMM01000008_gene1031	NA	NA
UHGV-0077533_10	Pfam	PF20458	NA	DUF6711
UHGV-0077533_10	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0077533_11	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0077533_11	UniRef90	UniRef90_A0A6N9L4U2	Tape measure protein	NA
UHGV-0077533_11	eggNOG-mapper	650150.ERH_0621	tape measure	NA
UHGV-0077533_11	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0077533_11	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0077533_11	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0077533_12	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0077533_12	UniRef90	UniRef90_UPI0011C9B36A	NA	NA
UHGV-0077533_12	eggNOG-mapper	445974.CLORAM_02923	NA	NA
UHGV-0077533_12	Pfam	PF19591	NA	DUF6096
UHGV-0077533_12	Structural annotation	PF19591	NA	NA
UHGV-0077533_13	PHROG	phrog_158	major tail protein	tail
UHGV-0077533_13	UniRef90	UniRef90_A0A6N9L2K6	Phage tail protein	NA
UHGV-0077533_13	eggNOG-mapper	445974.CLORAM_02924	Phage tail tube protein, TTP	NA
UHGV-0077533_13	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0077533_13	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0077533_14	PHROG	phrog_78	tail terminator	connector
UHGV-0077533_14	eggNOG-mapper	1504823.CCMM01000008_gene1036	NA	NA
UHGV-0077533_14	Structural annotation	PF05657	NA	NA
UHGV-0077533_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0077533_15	UniRef90	UniRef90_A0A6N9L3B6	HK97 gp10 family phage protein	NA
UHGV-0077533_15	eggNOG-mapper	742733.HMPREF9469_01819	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0077533_15	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0077533_15	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0077533_15	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0077533_16	PHROG	phrog_2168	NA	unknown function
UHGV-0077533_16	eggNOG-mapper	1294142.CINTURNW_1693	NA	NA
UHGV-0077533_16	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0077533_17	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0077533_17	UniRef90	UniRef90_UPI001C101B39	phage head-tail connector protein	NA
UHGV-0077533_17	eggNOG-mapper	1235800.C819_00483	Phage gp6-like head-tail connector protein	NA
UHGV-0077533_17	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0077533_17	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0077533_18	PHROG	phrog_2724	NA	unknown function
UHGV-0077533_18	UniRef90	UniRef90_A0A6N9L4P9	Rho_N domain-containing protein	NA
UHGV-0077533_18	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0077533_18	COG	COG0261	Ribosomal protein L21	NA
UHGV-0077533_18	Structural annotation	PF07498	NA	NA
UHGV-0077533_19	PHROG	phrog_422	major head protein	head and packaging
UHGV-0077533_19	UniRef90	UniRef90_A0A2H4JCM6	Putative capsid protein	NA
UHGV-0077533_19	eggNOG-mapper	1211844.CBLM010000016_gene1491	NA	NA
UHGV-0077533_19	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0077533_20	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0077533_20	UniRef90	UniRef90_A0A6N9L4V5	NA	NA
UHGV-0077533_20	eggNOG-mapper	445974.CLORAM_02931	NA	NA
UHGV-0077533_20	Pfam	PF14265	NA	DUF4355
UHGV-0077533_20	Structural annotation	PF14265	NA	NA
UHGV-0077533_21	PHROG	phrog_30609	NA	unknown function
UHGV-0077533_21	Structural annotation	PF21485	NA	NA
UHGV-0077533_22	PHROG	phrog_3675	NA	unknown function
UHGV-0077533_22	UniRef90	UniRef90_A0A0E4H649	YjcQ protein	NA
UHGV-0077533_22	eggNOG-mapper	1120978.KB894082_gene1061	YjcQ protein	NA
UHGV-0077533_22	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0077533_22	Structural annotation	PF09639, TIGR04176, COG1695	NA	NA
UHGV-0077533_24	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0077533_24	UniRef90	UniRef90_A0A6N9L4X5	Phage_Mu_F domain-containing protein	NA
UHGV-0077533_24	eggNOG-mapper	1211844.CBLM010000016_gene1495	Phage Mu protein F like protein	NA
UHGV-0077533_24	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0077533_24	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0077533_24	COG	COG2369	NA	NA
UHGV-0077533_24	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0077533_25	PHROG	phrog_64	portal protein	head and packaging
UHGV-0077533_25	UniRef90	UniRef90_A0A6N9L3D6	Phage portal protein	NA
UHGV-0077533_25	eggNOG-mapper	445974.CLORAM_02935	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0077533_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0077533_25	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0077533_25	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0077533_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0077533_26	PHROG	phrog_6672	terminase large subunit	head and packaging
UHGV-0077533_26	UniRef90	UniRef90_A0A3D0EFB5	PBSX family phage terminase large subunit (Fragment)	NA
UHGV-0077533_26	eggNOG-mapper	445974.CLORAM_02936	Phage terminase, large subunit, PBSX family	NA
UHGV-0077533_26	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0077533_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0077533_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0077533_27	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0077533_27	UniRef90	UniRef90_A0A6N9L4W9	PBSX family phage terminase large subunit	NA
UHGV-0077533_27	eggNOG-mapper	1504823.CCMM01000008_gene1048	DNA packaging	NA
UHGV-0077533_27	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0077533_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0077533_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0077533_27	Structural annotation	PF04466, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0077533_28	PHROG	phrog_2412	NA	unknown function
UHGV-0077533_28	UniRef90	UniRef90_UPI001C38E948	KGG domain-containing protein	NA
UHGV-0077533_28	eggNOG-mapper	1125712.HMPREF1316_1524	NA	NA
UHGV-0077533_28	Pfam	PF10685	Stress-induced bacterial acidophilic repeat motif	KGG
UHGV-0077533_28	Structural annotation	PF18932	NA	NA
UHGV-0077533_29	PHROG	phrog_9479	NA	unknown function
UHGV-0077533_29	Structural annotation	PF15529	NA	NA
UHGV-0077533_31	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0077533_31	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0077533_31	UniRef90	UniRef90_R6DKE7	ParB domain-containing protein	NA
UHGV-0077533_31	eggNOG-mapper	1232449.BAHV02000018_gene1534	NA	NA
UHGV-0077533_31	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0077533_31	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0077533_31	Pfam	PF14386	NA	DUF4417
UHGV-0077533_31	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0077533_31	Structural annotation	PF14386, PF02195, TIGR00180	NA	NA
UHGV-0077533_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0077533_32	eggNOG-mapper	1235792.C808_03069	sigma factor activity	NA
UHGV-0077533_32	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0077533_33	Structural annotation	PF15959	NA	NA
UHGV-0077533_34	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0077533_34	UniRef90	UniRef90_UPI0006C03F37	NA	NA
UHGV-0077533_34	eggNOG-mapper	525255.HMPREF0077_0413	NA	NA
UHGV-0077533_34	Pfam	PF06356	NA	DUF1064
UHGV-0077533_34	Structural annotation	PF06356	NA	NA
UHGV-0077533_35	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0077533_35	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0077533_35	UniRef90	UniRef90_A0A6N9L4V1	Single-stranded DNA-binding protein	NA
UHGV-0077533_35	eggNOG-mapper	1211844.CBLM010000119_gene3417	COG COG0629 Single-stranded DNA-binding protein	NA
UHGV-0077533_35	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0077533_35	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0077533_35	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0077533_35	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0077533_35	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0077533_38	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0077533_38	Structural annotation	NF001613, COG1694	NA	NA
UHGV-0077533_41	PHROG	phrog_22292	NA	unknown function
UHGV-0077533_43	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0077533_43	UniRef90	UniRef90_UPI001C395B09	winged helix-turn-helix transcriptional regulator	NA
UHGV-0077533_43	eggNOG-mapper	1567015.A0A0A7RUH1_9VIRU	calcium ion binding	NA
UHGV-0077533_43	Structural annotation	PF09681, NF033788, COG0640	NA	NA
UHGV-0077533_44	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0077533_44	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0077533_44	UniRef90	UniRef90_A0A6N9L4X4	Recombinase	NA
UHGV-0077533_44	eggNOG-mapper	1095750.HMPREF9970_1675	RecT family	NA
UHGV-0077533_44	Pfam	PF03837	RecT family	RecT
UHGV-0077533_44	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0077533_44	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0077533_44	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0077533_45	PHROG	phrog_674	NA	unknown function
UHGV-0077533_45	UniRef90	UniRef90_UPI001C383633	NA	NA
UHGV-0077533_45	eggNOG-mapper	1234679.BN424_3317	NA	NA
UHGV-0077533_45	Pfam	PF07083	NA	DUF1351
UHGV-0077533_45	Structural annotation	PF07083	NA	NA
UHGV-0077533_46	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0077533_46	UniRef90	UniRef90_A0A6N9L4Y3	Recombinase	NA
UHGV-0077533_46	eggNOG-mapper	888055.HMPREF9015_01894	YqaJ viral recombinase family	NA
UHGV-0077533_46	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0077533_46	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0077533_46	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0077533_46	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0077533_50	UniRef90	UniRef90_A0A416DT94	DNA-binding protein	NA
UHGV-0077533_50	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0077533_51	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0077533_51	PHROG	phrog_15968	anti-repressor	transcription regulation
UHGV-0077533_51	UniRef90	UniRef90_UPI0006C61D74	phage antirepressor KilAC domain-containing protein	NA
UHGV-0077533_51	eggNOG-mapper	568816.Acin_1403	Phage antirepressor protein KilAC domain	NA
UHGV-0077533_51	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0077533_51	COG	COG3617	Prophage antirepressor	NA
UHGV-0077533_51	Structural annotation	PF03374, COG3645	NA	NA
UHGV-0077533_52	eggNOG-mapper	1123250.KB908434_gene5	Phage antirepressor protein KilAC domain	NA
UHGV-0077533_52	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0077533_53	PHROG	phrog_7940	NA	unknown function
UHGV-0077533_53	UniRef90	UniRef90_UPI0009C2C388	Bro-N domain-containing protein	NA
UHGV-0077533_53	eggNOG-mapper	1304866.K413DRAFT_1246	BRO family, N-terminal domain	NA
UHGV-0077533_53	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0077533_53	COG	COG3617	Prophage antirepressor	NA
UHGV-0077533_54	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0077533_54	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0077533_54	UniRef90	UniRef90_A0A413S067	XRE family transcriptional regulator	NA
UHGV-0077533_54	eggNOG-mapper	1256908.HMPREF0373_00646	Helix-turn-helix XRE-family like proteins	NA
UHGV-0077533_54	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0077533_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0077533_54	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0077533_54	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0077533_55	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0077533_55	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0077533_55	UniRef90	UniRef90_A0A1Y4R5X5	HTH cro/C1-type domain-containing protein	NA
UHGV-0077533_55	eggNOG-mapper	476272.RUMHYD_03305	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0077533_55	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0077533_55	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0077533_55	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0077533_55	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0077533_56	KOfam	K14059	int; integrase	NA
UHGV-0077533_56	PHROG	phrog_1	integrase	integration and excision
UHGV-0077533_56	UniRef90	UniRef90_E2NR65	Site-specific recombinase, phage integrase family	NA
UHGV-0077533_56	eggNOG-mapper	1504823.CCMM01000008_gene1083	DNA integration	NA
UHGV-0077533_56	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0077533_56	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0077533_56	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA