UHGV-0077625

Genome information

Genome length 20,978 bps

CDS count 29

Completeness 54.12% (medium-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-0077625
vOTU ID	vOTU-041373
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_155986
BioSample	SAMEA2784475
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.12% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.06
Jumbo phage	No

Genome content
Genome length	20,978 bps
GC content	54.97%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	29
CDS density	91.42%
Average CDS length	665.28 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0077625_1	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0077625_1	UniRef90	UniRef90_A0A1C6FMR4	Phage minor capsid protein 2	NA
UHGV-0077625_1	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0077625_1	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0077625_1	COG	COG2369	NA	NA
UHGV-0077625_1	Structural annotation	PF06152	NA	NA
UHGV-0077625_2	PHROG	phrog_533	portal protein	head and packaging
UHGV-0077625_2	UniRef90	UniRef90_A0A349GP64	Portal protein	NA
UHGV-0077625_2	eggNOG-mapper	1460640.JCM19046_3520	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0077625_2	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0077625_2	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0077625_2	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0077625_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0077625_3	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0077625_3	UniRef90	UniRef90_UPI00041C320F	PBSX family phage terminase large subunit	NA
UHGV-0077625_3	eggNOG-mapper	1120998.AUFC01000030_gene2231	Phage terminase, large subunit, PBSX family	NA
UHGV-0077625_3	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0077625_3	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0077625_3	COG	COG1783	Phage terminase large subunit	NA
UHGV-0077625_3	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0077625_4	PHROG	phrog_2412	NA	unknown function
UHGV-0077625_4	eggNOG-mapper	173707.Q938L4_9CAUD	NA	NA
UHGV-0077625_5	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0077625_5	UniRef90	UniRef90_R5GVZ3	Sigma70_r4 domain-containing protein	NA
UHGV-0077625_5	eggNOG-mapper	1027292.HMPREF9372_1273	NA	NA
UHGV-0077625_5	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0077625_5	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0077625_5	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0077625_7	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0077625_7	UniRef90	UniRef90_A0A6L6XD58	Restriction alleviation protein, Lar family	NA
UHGV-0077625_7	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0077625_7	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0077625_7	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0077625_8	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-0077625_11	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0077625_11	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0077625_11	UniRef90	UniRef90_A0A356CZ91	DNA primase	NA
UHGV-0077625_11	eggNOG-mapper	1410670.JHXF01000015_gene2274	Phage plasmid primase, P4 family	NA
UHGV-0077625_11	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0077625_11	Pfam	PF19263	NA	DUF5906
UHGV-0077625_11	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0077625_11	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0077625_11	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0077625_11	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF011296, COG3378, COG4983	NA	NA
UHGV-0077625_12	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0077625_12	UniRef90	UniRef90_UPI0019172865	NA	NA
UHGV-0077625_12	eggNOG-mapper	1347392.CCEZ01000005_gene1216	NA	NA
UHGV-0077625_12	Pfam	PF05037	NA	DUF669
UHGV-0077625_12	Structural annotation	PF05037, NF004948	NA	NA
UHGV-0077625_13	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0077625_13	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0077625_13	UniRef90	UniRef90_R6RJE0	DNA or RNA helicases of superfamily II	NA
UHGV-0077625_13	eggNOG-mapper	1410670.JHXF01000015_gene2270	helicase	NA
UHGV-0077625_13	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0077625_13	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0077625_13	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0077625_13	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0077625_13	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0077625_14	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0077625_14	UniRef90	UniRef90_UPI001A9B3ECC	AAA family ATPase	NA
UHGV-0077625_14	eggNOG-mapper	754027.HMPREF9554_00709	NA	NA
UHGV-0077625_14	Pfam	PF13479	AAA domain	AAA_24
UHGV-0077625_14	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0077625_15	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0077625_15	UniRef90	UniRef90_UPI00189A2233	siphovirus Gp157 family protein	NA
UHGV-0077625_15	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0077625_15	Structural annotation	PF05565	NA	NA
UHGV-0077625_16	PHROG	phrog_15609	NA	unknown function
UHGV-0077625_16	UniRef90	UniRef90_A0A373VML2	NA	NA
UHGV-0077625_16	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-0077625_16	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0077625_17	PHROG	phrog_8470	NA	unknown function
UHGV-0077625_17	UniRef90	UniRef90_A0A315Y141	PcfJ-like protein	NA
UHGV-0077625_17	eggNOG-mapper	641112.ACOK01000073_gene2870	PcfJ-like protein	NA
UHGV-0077625_17	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0077625_17	Structural annotation	PF14284	NA	NA
UHGV-0077625_18	PHROG	phrog_38338	NA	unknown function
UHGV-0077625_18	eggNOG-mapper	665956.HMPREF1032_03098	NA	NA
UHGV-0077625_19	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0077625_19	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0077625_19	Structural annotation	PF13384, PF02796, NF040595, COG3415	NA	NA
UHGV-0077625_22	UniRef90	UniRef90_A0A143ZV08	Helix-turn-helix domain protein	NA
UHGV-0077625_22	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0077625_22	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0077625_25	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0077625_25	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0077625_25	UniRef90	UniRef90_R5Y961	DNA-binding helix-turn-helix / peptidase S24-like multi-domain protein	NA
UHGV-0077625_25	eggNOG-mapper	272626.lin0073	Helix-turn-helix XRE-family like proteins	NA
UHGV-0077625_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0077625_25	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0077625_25	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0077625_26	PHROG	phrog_1914	NA	unknown function
UHGV-0077625_26	UniRef90	UniRef90_W0U704	Peptidase_M78 domain-containing protein	NA
UHGV-0077625_26	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0077625_26	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0077625_26	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0077625_26	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0077625_27	eggNOG-mapper	411471.SUBVAR_05869	repeat protein	NA
UHGV-0077625_27	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0077625_28	eggNOG-mapper	483216.BACEGG_01163	NA	NA
UHGV-0077625_29	KOfam	K14059	int; integrase	NA
UHGV-0077625_29	PHROG	phrog_1	integrase	integration and excision
UHGV-0077625_29	UniRef90	UniRef90_B0ML01	Site-specific recombinase, phage integrase family	NA
UHGV-0077625_29	eggNOG-mapper	641112.ACOK01000073_gene2860	Phage integrase family	NA
UHGV-0077625_29	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0077625_29	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0077625_29	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA