UHGV-0077632

Genome information

Genome length 30,546 bps

CDS count 44

Completeness 75.69% (medium-quality)

geNomad score 0.9749

Prediction confidence Confident

Genome information
Genome ID	UHGV-0077632
vOTU ID	vOTU-035523
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_155975
BioSample	NA
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.69% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9749
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	73.21
Jumbo phage	No

Genome content
Genome length	30,546 bps
GC content	36.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	44
CDS density	94.71%
Average CDS length	660.41 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0077632_2	KOfam	K07273	acm; lysozyme	NA
UHGV-0077632_2	PHROG	phrog_291	endolysin	lysis
UHGV-0077632_2	UniRef90	UniRef90_A0A415MEE0	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0077632_2	eggNOG-mapper	515620.EUBELI_01316	Glycoside Hydrolase Family 25-like lysozyme endolysin	NA
UHGV-0077632_2	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0077632_2	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0077632_2	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0077632_3	PHROG	phrog_1129	holin	lysis
UHGV-0077632_3	UniRef90	UniRef90_A0A356C4S4	Enolase	NA
UHGV-0077632_3	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0077632_3	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0077632_3	Structural annotation	PF06946	NA	NA
UHGV-0077632_4	PHROG	phrog_1863	NA	unknown function
UHGV-0077632_4	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0077632_5	PHROG	phrog_3558	tail protein	tail
UHGV-0077632_5	UniRef90	UniRef90_UPI000E5CB7B2	phage tail protein	NA
UHGV-0077632_5	eggNOG-mapper	411465.PEPMIC_00746	Prophage endopeptidase tail	NA
UHGV-0077632_5	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0077632_5	COG	COG4926	Phage-related protein	NA
UHGV-0077632_5	Structural annotation	PF06605, PF21683, TIGR01665, COG4926	NA	NA
UHGV-0077632_6	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0077632_6	UniRef90	UniRef90_UPI000E5CE8E9	phage tail family protein	NA
UHGV-0077632_6	eggNOG-mapper	411465.PEPMIC_00745	NA	NA
UHGV-0077632_6	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0077632_6	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0077632_7	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0077632_7	UniRef90	UniRef90_UPI0016512790	phage tail tape measure protein	NA
UHGV-0077632_7	eggNOG-mapper	1201292.DR75_1631	Phage-related minor tail protein	NA
UHGV-0077632_7	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0077632_7	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0077632_7	COG	COG5283	Phage-related tail protein	NA
UHGV-0077632_7	Structural annotation	PF10145, TIGR01760, TIGR01844, COG5280, COG1538	NA	NA
UHGV-0077632_9	PHROG	phrog_1021	NA	unknown function
UHGV-0077632_9	eggNOG-mapper	1256908.HMPREF0373_00470	NA	NA
UHGV-0077632_10	PHROG	phrog_885	major tail protein	tail
UHGV-0077632_10	eggNOG-mapper	1235800.C819_02228	NA	NA
UHGV-0077632_10	Structural annotation	PF09393, TIGR01603, COG3498	NA	NA
UHGV-0077632_11	PHROG	phrog_957	head protein	head and packaging
UHGV-0077632_11	eggNOG-mapper	1235800.C819_02229	NA	NA
UHGV-0077632_11	Structural annotation	PF12691	NA	NA
UHGV-0077632_12	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0077632_12	UniRef90	UniRef90_UPI000E5D9FC1	HK97 gp10 family phage protein	NA
UHGV-0077632_12	eggNOG-mapper	1256908.HMPREF0373_00473	NA	NA
UHGV-0077632_12	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0077632_12	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0077632_13	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-0077632_13	UniRef90	UniRef90_UPI0016516CE8	head-tail adaptor protein	NA
UHGV-0077632_13	eggNOG-mapper	1256908.HMPREF0373_00474	NA	NA
UHGV-0077632_13	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0077632_13	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0077632_14	PHROG	phrog_1236	head protein	head and packaging
UHGV-0077632_14	eggNOG-mapper	1256908.HMPREF0373_00475	NA	NA
UHGV-0077632_14	Structural annotation	PF05135	NA	NA
UHGV-0077632_15	PHROG	phrog_544	major head protein	head and packaging
UHGV-0077632_15	UniRef90	UniRef90_UPI000E5CD0B7	N4-gp56 family major capsid protein	NA
UHGV-0077632_15	eggNOG-mapper	411471.SUBVAR_06940	NA	NA
UHGV-0077632_15	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0077632_15	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0077632_16	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0077632_16	UniRef90	UniRef90_UPI000E5C7AD7	phage scaffolding protein	NA
UHGV-0077632_16	eggNOG-mapper	1256908.HMPREF0373_00477	Phage minor structural protein GP20	NA
UHGV-0077632_16	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0077632_16	Structural annotation	PF06810	NA	NA
UHGV-0077632_17	PHROG	phrog_372	tail protein	tail
UHGV-0077632_17	UniRef90	UniRef90_UPI000E5CC2C3	NA	NA
UHGV-0077632_17	eggNOG-mapper	764299.STRIC_2437	NA	NA
UHGV-0077632_17	Pfam	PF05895	NA	DUF859
UHGV-0077632_17	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0077632_20	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0077632_20	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0077632_20	UniRef90	UniRef90_A0A3A6JBL8	Phage_Mu_F domain-containing protein	NA
UHGV-0077632_20	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-0077632_20	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0077632_20	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0077632_20	COG	COG2369	NA	NA
UHGV-0077632_20	Structural annotation	PF03496, PF04233, NF041404, TIGR01641, COG2369	NA	NA
UHGV-0077632_21	PHROG	phrog_64	portal protein	head and packaging
UHGV-0077632_21	UniRef90	UniRef90_UPI000E5D0BC3	phage portal protein	NA
UHGV-0077632_21	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0077632_21	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0077632_21	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0077632_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0077632_22	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0077632_22	UniRef90	UniRef90_UPI000E5CEDAF	PBSX family phage terminase large subunit	NA
UHGV-0077632_22	eggNOG-mapper	476272.RUMHYD_02845	Phage terminase, large subunit, PBSX family	NA
UHGV-0077632_22	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0077632_22	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0077632_22	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0077632_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-0077632_22	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0077632_24	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0077632_24	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0077632_24	UniRef90	UniRef90_UPI000E5D753C	terminase small subunit	NA
UHGV-0077632_24	eggNOG-mapper	1029718.SFBM_0378	Terminase small subunit	NA
UHGV-0077632_24	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0077632_24	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0077632_24	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0077632_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0077632_25	UniRef90	UniRef90_A0A6N7XL46	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0077632_25	eggNOG-mapper	1487921.DP68_11260	sigma factor activity	NA
UHGV-0077632_25	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0077632_25	Structural annotation	PF07374, MF_00674, NF008895, COG1342	NA	NA
UHGV-0077632_26	PHROG	phrog_20593	NA	unknown function
UHGV-0077632_28	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0077632_28	UniRef90	UniRef90_A0A356C4U7	Replisome organizer	NA
UHGV-0077632_28	eggNOG-mapper	1160721.RBI_II00484	DnaD domain protein	NA
UHGV-0077632_28	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0077632_28	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0077632_32	eggNOG-mapper	411460.RUMTOR_01699	NA	NA
UHGV-0077632_33	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-0077632_34	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0077632_34	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0077632_34	UniRef90	UniRef90_A0A3R5X017	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0077632_34	eggNOG-mapper	796940.HMPREF9628_00163	Endodeoxyribonuclease RusA	NA
UHGV-0077632_34	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0077632_34	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0077632_34	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0077632_35	Structural annotation	PF17399	NA	NA
UHGV-0077632_36	PHROG	phrog_1029	NA	unknown function
UHGV-0077632_36	UniRef90	UniRef90_A0A3D5WKT6	Peptidase S59 domain-containing protein	NA
UHGV-0077632_36	eggNOG-mapper	1232453.BAIF02000057_gene1140	NA	NA
UHGV-0077632_36	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0077632_37	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0077632_37	eggNOG-mapper	1298920.KI911353_gene2719	NA	NA
UHGV-0077632_38	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0077632_38	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0077632_38	UniRef90	UniRef90_A0A844E2H7	Recombinase	NA
UHGV-0077632_38	eggNOG-mapper	742740.HMPREF9474_03488	RecT family	NA
UHGV-0077632_38	Pfam	PF03837	RecT family	RecT
UHGV-0077632_38	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0077632_38	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0077632_38	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0077632_39	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0077632_39	UniRef90	UniRef90_A6BES1	AP2 domain protein	NA
UHGV-0077632_39	eggNOG-mapper	411462.DORLON_00791	NA	NA
UHGV-0077632_39	Structural annotation	PF17375	NA	NA
UHGV-0077632_41	PHROG	phrog_674	NA	unknown function
UHGV-0077632_41	UniRef90	UniRef90_A0A844E1E5	NA	NA
UHGV-0077632_41	eggNOG-mapper	1095750.HMPREF9970_1676	NA	NA
UHGV-0077632_41	Pfam	PF07083	NA	DUF1351
UHGV-0077632_41	Structural annotation	PF07083	NA	NA
UHGV-0077632_43	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0077632_43	UniRef90	UniRef90_A0A3A6C8C7	Recombinase	NA
UHGV-0077632_43	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-0077632_43	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0077632_43	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0077632_43	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0077632_43	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0077632_44	PHROG	phrog_27197	NA	unknown function
UHGV-0077632_44	eggNOG-mapper	886882.PPSC2_p0363	regulation of DNA-templated transcription, elongation	NA
UHGV-0077632_44	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0077632_44	Structural annotation	NF007410	NA	NA