UHGV-0077723

Genome information

Genome length 31,407 bps

CDS count 50

Completeness 100.00% (complete)

geNomad score 0.9750

Prediction confidence Confident

Genome information
Genome ID	UHGV-0077723
vOTU ID	vOTU-006370
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_147187
BioSample	SAMEA2737819
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9750
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.56
Jumbo phage	No

Genome content
Genome length	31,407 bps
GC content	45.16%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	92.74%
Average CDS length	586.98 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0077723_1	UniRef90	UniRef90_A0A2Z4GU98	Ribonuclease inhibitor	NA
UHGV-0077723_1	eggNOG-mapper	563031.HMPREF0666_01114	NA	NA
UHGV-0077723_6	PHROG	phrog_14970	NA	unknown function
UHGV-0077723_6	UniRef90	UniRef90_A0A1C5NV07	DNA damage response protein A	NA
UHGV-0077723_6	eggNOG-mapper	435590.BVU_2861	double-strand break repair protein	NA
UHGV-0077723_6	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0077723_6	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0077723_7	PHROG	phrog_398	NA	unknown function
UHGV-0077723_7	UniRef90	UniRef90_UPI001E4CD732	putative HNHc nuclease	NA
UHGV-0077723_7	eggNOG-mapper	1485543.JMME01000021_gene802	Putative HNHc nuclease	NA
UHGV-0077723_7	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0077723_7	Structural annotation	PF16784	NA	NA
UHGV-0077723_8	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0077723_8	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0077723_8	UniRef90	UniRef90_A0A3D0W0H5	Single-stranded DNA-binding protein	NA
UHGV-0077723_8	eggNOG-mapper	537013.CLOSTMETH_00062	Single-stranded DNA-binding protein	NA
UHGV-0077723_8	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0077723_8	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0077723_8	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0077723_8	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0077723_8	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0077723_9	PHROG	phrog_15768	NA	unknown function
UHGV-0077723_9	UniRef90	UniRef90_A0A4R1QQE6	NA	NA
UHGV-0077723_9	eggNOG-mapper	1232428.CAVO010000067_gene439	NA	NA
UHGV-0077723_9	Pfam	PF19808	NA	DUF6291
UHGV-0077723_9	Structural annotation	PF19808	NA	NA
UHGV-0077723_10	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0077723_10	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0077723_10	UniRef90	UniRef90_UPI00131A3D1F	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0077723_10	eggNOG-mapper	1284352.AOIG01000022_gene3783	Endodeoxyribonuclease RusA	NA
UHGV-0077723_10	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0077723_10	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0077723_12	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0077723_12	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0077723_12	UniRef90	UniRef90_A0A316NA61	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0077723_12	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0077723_12	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0077723_12	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0077723_12	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0077723_12	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0077723_12	Structural annotation	PF00145, TIGR00675	NA	NA
UHGV-0077723_13	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0077723_13	UniRef90	UniRef90_A0A1Y4EVK6	Adenine methyltransferase	NA
UHGV-0077723_13	eggNOG-mapper	1567011.A0A0A7RUD1_9VIRU	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0077723_13	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0077723_13	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0077723_13	Structural annotation	PF05869, TIGR01712, COG0338	NA	NA
UHGV-0077723_14	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0077723_14	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0077723_14	UniRef90	UniRef90_UPI0013D6AEE4	helix-turn-helix domain-containing protein	NA
UHGV-0077723_14	eggNOG-mapper	521460.Athe_1027	PFAM helix-turn-helix domain protein	NA
UHGV-0077723_14	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0077723_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0077723_14	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0077723_19	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0077723_19	UniRef90	UniRef90_A0A3D3FGT2	Sigma70_r4 domain-containing protein	NA
UHGV-0077723_19	eggNOG-mapper	883112.HMPREF9707_01621	NA	NA
UHGV-0077723_19	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0077723_19	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0077723_19	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0077723_20	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0077723_20	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0077723_20	UniRef90	UniRef90_A0A1Y3XJ19	HicB family protein	NA
UHGV-0077723_20	eggNOG-mapper	1195236.CTER_2094	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0077723_20	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0077723_20	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0077723_20	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0077723_21	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0077723_21	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0077723_21	UniRef90	UniRef90_A0A316NM27	Toxin-antitoxin system, toxin component, HicA family protein	NA
UHGV-0077723_21	eggNOG-mapper	411460.RUMTOR_02081	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0077723_21	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0077723_21	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0077723_21	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0077723_22	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0077723_22	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0077723_22	UniRef90	UniRef90_A0A2V2GQ57	HNH endonuclease	NA
UHGV-0077723_22	eggNOG-mapper	1226322.HMPREF1545_00111	HNH nucleases	NA
UHGV-0077723_22	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0077723_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0077723_22	Structural annotation	PF05766, NF008448	NA	NA
UHGV-0077723_23	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0077723_23	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-0077723_23	eggNOG-mapper	1145276.T479_19995	Phage terminase, small subunit	NA
UHGV-0077723_23	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0077723_23	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0077723_23	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0077723_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0077723_24	UniRef90	UniRef90_A0A316NLJ1	Terminase	NA
UHGV-0077723_24	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0077723_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0077723_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0077723_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0077723_24	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0077723_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0077723_25	UniRef90	UniRef90_A0A0D8IVL0	Phage portal protein	NA
UHGV-0077723_25	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-0077723_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0077723_25	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0077723_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0077723_25	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0077723_26	KOfam	K06904	NA	NA
UHGV-0077723_26	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0077723_26	UniRef90	UniRef90_U2SBX0	Phage prohead protease, HK97 family	NA
UHGV-0077723_26	eggNOG-mapper	1226322.HMPREF1545_00115	Phage prohead protease, HK97 family	NA
UHGV-0077723_26	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0077723_26	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0077723_26	COG	COG3740	Phage head maturation protease	NA
UHGV-0077723_26	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0077723_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-0077723_27	UniRef90	UniRef90_UPI000679B959	phage major capsid protein	NA
UHGV-0077723_27	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-0077723_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0077723_27	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0077723_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0077723_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0077723_27	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0077723_28	PHROG	phrog_2550	NA	unknown function
UHGV-0077723_28	UniRef90	UniRef90_UPI0008717716	phage head-tail connector protein	NA
UHGV-0077723_28	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0077723_28	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0077723_29	PHROG	phrog_19734	NA	unknown function
UHGV-0077723_29	UniRef90	UniRef90_A0A316NL63	Head-tail adaptor protein	NA
UHGV-0077723_29	eggNOG-mapper	33035.JPJF01000039_gene275	NA	NA
UHGV-0077723_29	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0077723_30	PHROG	phrog_78	tail terminator	connector
UHGV-0077723_30	eggNOG-mapper	1232446.BAIE02000002_gene829	NA	NA
UHGV-0077723_30	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0077723_31	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0077723_31	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0077723_32	PHROG	phrog_88	major tail protein	tail
UHGV-0077723_32	UniRef90	UniRef90_G9YSC5	Phage major tail protein, phi13 family	NA
UHGV-0077723_32	eggNOG-mapper	394503.Ccel_2828	phage major tail protein, phi13 family	NA
UHGV-0077723_32	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0077723_32	COG	COG5492	NA	NA
UHGV-0077723_32	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0077723_35	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0077723_35	UniRef90	UniRef90_UPI001E348C9F	phage tail tape measure protein	NA
UHGV-0077723_35	eggNOG-mapper	1160721.RBI_II00528	Phage tail tape measure protein, TP901 family	NA
UHGV-0077723_35	COG	COG1006	Multisubunit Na+/H+ antiporter, MnhC subunit	NA
UHGV-0077723_35	Structural annotation	PF20155	NA	NA
UHGV-0077723_36	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0077723_36	UniRef90	UniRef90_A0A1C5W6B6	Phage-related protein	NA
UHGV-0077723_36	eggNOG-mapper	1123263.AUKY01000068_gene490	tail component	NA
UHGV-0077723_36	COG	COG4722	Phage-related protein YomH	NA
UHGV-0077723_36	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0077723_37	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0077723_37	UniRef90	UniRef90_A0A1C6H6B4	Phage-related protein	NA
UHGV-0077723_37	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0077723_37	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0077723_37	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0077723_37	COG	COG4926	Phage-related protein	NA
UHGV-0077723_37	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0077723_38	PHROG	phrog_16573	NA	unknown function
UHGV-0077723_38	eggNOG-mapper	1160721.RBI_I01572	NA	NA
UHGV-0077723_38	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0077723_39	PHROG	phrog_24451	NA	unknown function
UHGV-0077723_39	eggNOG-mapper	931276.Cspa_c07590	NA	NA
UHGV-0077723_40	KOfam	K18454	deaA; chitin disaccharide deacetylase [EC:3.5.1.105]	NA
UHGV-0077723_40	PHROG	phrog_18593	NA	unknown function
UHGV-0077723_40	UniRef90	UniRef90_R6RWR8	Carbohydrate binding domain protein	NA
UHGV-0077723_40	eggNOG-mapper	411460.RUMTOR_02099	NA	NA
UHGV-0077723_40	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0077723_40	Structural annotation	PF14600	NA	NA
UHGV-0077723_41	PHROG	phrog_937	hemolysin	other
UHGV-0077723_41	eggNOG-mapper	1235792.C808_00576	NA	NA
UHGV-0077723_42	PHROG	phrog_10091	holin	lysis
UHGV-0077723_42	UniRef90	UniRef90_A0A1Y4IXC2	Phage holin	NA
UHGV-0077723_42	eggNOG-mapper	428127.EUBDOL_01206	COG5546 Small integral membrane protein	NA
UHGV-0077723_42	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0077723_42	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0077723_42	COG	COG5546	NA	NA
UHGV-0077723_42	Structural annotation	COG5546	NA	NA
UHGV-0077723_43	KOfam	K07273	acm; lysozyme	NA
UHGV-0077723_43	PHROG	phrog_291	endolysin	lysis
UHGV-0077723_43	UniRef90	UniRef90_A0A1C5WYX1	Autolytic lysozyme	NA
UHGV-0077723_43	eggNOG-mapper	537013.CLOSTMETH_02711	hydrolase, family 25	NA
UHGV-0077723_43	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0077723_43	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0077723_43	Structural annotation	PF01183, NF002575, COG3757	NA	NA
UHGV-0077723_46	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0077723_46	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0077723_46	UniRef90	UniRef90_UPI00137A9695	helix-turn-helix domain-containing protein	NA
UHGV-0077723_46	eggNOG-mapper	365048.Q0H244_9CAUD	protein disulfide oxidoreductase activity	NA
UHGV-0077723_46	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0077723_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0077723_46	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0077723_47	UniRef90	UniRef90_A0A1C5P7I8	Predicted transcriptional regulator	NA
UHGV-0077723_47	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0077723_48	UniRef90	UniRef90_UPI001C1173DA	helix-turn-helix domain-containing protein	NA
UHGV-0077723_48	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0077723_48	Structural annotation	PF05339, NF041575, COG3655	NA	NA