UHGV-0077763

Genome information

Genome length 37,083 bps

CDS count 61

Completeness 90.88% (high-quality)

geNomad score 0.9611

Prediction confidence Confident

Genome information
Genome ID	UHGV-0077763
vOTU ID	vOTU-013660
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_148504
BioSample	NA
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.88% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9611
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.53
Jumbo phage	No

Genome content
Genome length	37,083 bps
GC content	55.67%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	89.76%
Average CDS length	548.85 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0077763_1	KOfam	K03657	uvrD, pcrA; ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]	NA
UHGV-0077763_1	PHROG	phrog_1967	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0077763_1	UniRef90	UniRef90_UPI000C83F0E3	ATP-dependent helicase	NA
UHGV-0077763_1	eggNOG-mapper	1105031.HMPREF1141_2774	UvrD/REP helicase N-terminal domain	NA
UHGV-0077763_1	PADLOC	GajB_00020	UrvD helicase	Gabija
UHGV-0077763_1	Pfam	PF00580	UvrD/REP helicase N-terminal domain	UvrD-helicase
UHGV-0077763_1	Pfam	PF13538	UvrD-like helicase C-terminal domain	UvrD_C_2
UHGV-0077763_1	COG	COG0210	Superfamily I DNA or RNA helicase	NA
UHGV-0077763_3	UniRef90	UniRef90_A0A3D5IEQ2	DNA primase (Fragment)	NA
UHGV-0077763_3	eggNOG-mapper	483218.BACPEC_00287	Phage plasmid primase, P4 family domain protein	NA
UHGV-0077763_3	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0077763_4	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0077763_4	UniRef90	UniRef90_A0A3D5IEL9	SF3 helicase domain-containing protein	NA
UHGV-0077763_4	eggNOG-mapper	411473.RUMCAL_02065	Phage plasmid primase, P4 family	NA
UHGV-0077763_4	Pfam	PF19263	NA	DUF5906
UHGV-0077763_4	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0077763_5	PHROG	phrog_7338	NA	unknown function
UHGV-0077763_5	UniRef90	UniRef90_R7I826	HTH_17 domain-containing protein	NA
UHGV-0077763_5	eggNOG-mapper	935948.KE386495_gene1207	Excisionase from transposon Tn916	NA
UHGV-0077763_5	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0077763_5	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0077763_6	KOfam	K14059	int; integrase	NA
UHGV-0077763_6	eggNOG-mapper	632335.Calkr_0670	Belongs to the 'phage' integrase family	NA
UHGV-0077763_6	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0077763_6	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0077763_7	KOfam	K14059	int; integrase	NA
UHGV-0077763_7	PHROG	phrog_1	integrase	integration and excision
UHGV-0077763_7	UniRef90	UniRef90_UPI001F1BCD99	tyrosine-type recombinase/integrase	NA
UHGV-0077763_7	eggNOG-mapper	1235797.C816_02288	Belongs to the 'phage' integrase family	NA
UHGV-0077763_7	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0077763_7	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0077763_8	KOfam	K14059	int; integrase	NA
UHGV-0077763_8	PHROG	phrog_1	integrase	integration and excision
UHGV-0077763_8	UniRef90	UniRef90_A0A1Q6PVS0	Tyr recombinase domain-containing protein	NA
UHGV-0077763_8	eggNOG-mapper	1235797.C816_02286	Belongs to the 'phage' integrase family	NA
UHGV-0077763_8	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0077763_8	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0077763_9	eggNOG-mapper	218140.BPSY_1280	NA	NA
UHGV-0077763_10	PHROG	phrog_18586	NA	unknown function
UHGV-0077763_10	UniRef90	UniRef90_UPI001C0E3835	restriction endonuclease	NA
UHGV-0077763_10	eggNOG-mapper	913865.DOT_3033	NA	NA
UHGV-0077763_10	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0077763_10	Structural annotation	PF04471, COG1715	NA	NA
UHGV-0077763_11	eggNOG-mapper	411902.CLOBOL_04414	NA	NA
UHGV-0077763_11	Structural annotation	PF19363, COG3355	NA	NA
UHGV-0077763_12	UniRef90	UniRef90_M9LXJ4	Polyketide synthase module	NA
UHGV-0077763_12	eggNOG-mapper	411902.CLOBOL_04413	NA	NA
UHGV-0077763_12	Structural annotation	PF20505, NF001460, COG2974	NA	NA
UHGV-0077763_13	PHROG	phrog_1863	NA	unknown function
UHGV-0077763_13	UniRef90	UniRef90_A0A8D9UH94	Hemolysin	NA
UHGV-0077763_13	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0077763_14	PHROG	phrog_28673	tail protein	tail
UHGV-0077763_14	UniRef90	UniRef90_A0A7X7MVN5	SGNH/GDSL hydrolase family protein	NA
UHGV-0077763_14	eggNOG-mapper	1540090.A0A0A0RS40_9CAUD	NA	NA
UHGV-0077763_14	Pfam	PF13385	Concanavalin A-like lectin/glucanases superfamily	Laminin_G_3
UHGV-0077763_14	Structural annotation	PF14606, PF00722	NA	NA
UHGV-0077763_16	PHROG	phrog_3558	tail protein	tail
UHGV-0077763_16	UniRef90	UniRef90_A0A7U9XC50	Chromosome partition protein Smc	NA
UHGV-0077763_16	eggNOG-mapper	877414.ATWA01000019_gene2050	Phage minor structural protein	NA
UHGV-0077763_16	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0077763_16	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0077763_16	COG	COG4926	Phage-related protein	NA
UHGV-0077763_16	Structural annotation	PF06605, PF21683, TIGR01665, COG4926	NA	NA
UHGV-0077763_17	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0077763_17	UniRef90	UniRef90_A0A351TQW0	MtfA protein	NA
UHGV-0077763_17	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-0077763_17	COG	COG4722	Phage-related protein YomH	NA
UHGV-0077763_17	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0077763_18	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0077763_18	eggNOG-mapper	1123312.KB904569_gene357	Phage tail tape measure protein TP901	NA
UHGV-0077763_18	COG	COG5412	Phage-related protein	NA
UHGV-0077763_18	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0077763_20	PHROG	phrog_1021	NA	unknown function
UHGV-0077763_20	eggNOG-mapper	1256908.HMPREF0373_00470	NA	NA
UHGV-0077763_21	PHROG	phrog_885	major tail protein	tail
UHGV-0077763_21	eggNOG-mapper	1256908.HMPREF0373_00471	NA	NA
UHGV-0077763_21	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0077763_22	eggNOG-mapper	1235800.C819_02229	NA	NA
UHGV-0077763_22	Structural annotation	PF12691	NA	NA
UHGV-0077763_23	UniRef90	UniRef90_UPI001C107D65	HK97 gp10 family phage protein	NA
UHGV-0077763_23	eggNOG-mapper	1235800.C819_02230	NA	NA
UHGV-0077763_23	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0077763_24	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-0077763_24	UniRef90	UniRef90_A0A1C6E9J3	Bacteriophage head-tail adaptor	NA
UHGV-0077763_24	eggNOG-mapper	1256908.HMPREF0373_00474	NA	NA
UHGV-0077763_24	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0077763_25	PHROG	phrog_1236	head protein	head and packaging
UHGV-0077763_25	eggNOG-mapper	1256908.HMPREF0373_00475	NA	NA
UHGV-0077763_25	Structural annotation	PF05135	NA	NA
UHGV-0077763_26	PHROG	phrog_544	major head protein	head and packaging
UHGV-0077763_26	UniRef90	UniRef90_UPI000E5CD0B7	N4-gp56 family major capsid protein	NA
UHGV-0077763_26	eggNOG-mapper	411471.SUBVAR_06940	NA	NA
UHGV-0077763_26	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0077763_26	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0077763_27	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0077763_27	UniRef90	UniRef90_A0A6N3C3T0	Phage minor structural protein GP20	NA
UHGV-0077763_27	eggNOG-mapper	929506.CbC4_1215	Phage minor structural protein GP20	NA
UHGV-0077763_27	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0077763_27	Structural annotation	PF06810	NA	NA
UHGV-0077763_28	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0077763_28	PHROG	phrog_2649	endolysin	lysis
UHGV-0077763_28	UniRef90	UniRef90_A0A3D5IDY5	NlpC/P60 domain-containing protein	NA
UHGV-0077763_28	eggNOG-mapper	44060.JODL01000010_gene1575	Negative regulator of	NA
UHGV-0077763_28	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0077763_28	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0077763_28	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0077763_28	Structural annotation	PF00877, PF01471, NF033742, NF038080, COG0791	NA	NA
UHGV-0077763_29	PHROG	phrog_1129	holin	lysis
UHGV-0077763_29	UniRef90	UniRef90_A0A3D5IBP7	Enolase	NA
UHGV-0077763_29	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0077763_29	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0077763_29	Structural annotation	PF06946	NA	NA
UHGV-0077763_32	PHROG	phrog_34144	NA	unknown function
UHGV-0077763_32	eggNOG-mapper	575593.HMPREF0491_02785	NA	NA
UHGV-0077763_32	Structural annotation	PF20111	NA	NA
UHGV-0077763_33	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0077763_33	UniRef90	UniRef90_A0A3D5ID44	Phage_Mu_F domain-containing protein	NA
UHGV-0077763_33	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-0077763_33	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0077763_33	COG	COG2369	NA	NA
UHGV-0077763_33	Structural annotation	PF21814, PF06152, TIGR01641, COG2369	NA	NA
UHGV-0077763_34	PHROG	phrog_64	portal protein	head and packaging
UHGV-0077763_34	UniRef90	UniRef90_A0A3D2GX93	Portal protein	NA
UHGV-0077763_34	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0077763_34	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0077763_34	Structural annotation	PF05133, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0077763_35	UniRef90	UniRef90_UPI0018835F0C	collagen-like protein	NA
UHGV-0077763_35	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0077763_36	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0077763_36	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0077763_36	UniRef90	UniRef90_A0A1Q6Q1R5	Terminase	NA
UHGV-0077763_36	eggNOG-mapper	861454.HMPREF9099_00528	Phage terminase large subunit	NA
UHGV-0077763_36	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0077763_36	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0077763_36	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0077763_36	COG	COG1783	Phage terminase large subunit	NA
UHGV-0077763_36	HAMAP	MF_04145	Terminase, large subunit	NA
UHGV-0077763_36	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0077763_37	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0077763_37	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0077763_37	UniRef90	UniRef90_A0A3D5IBW1	Terminase small subunit	NA
UHGV-0077763_37	eggNOG-mapper	1256908.HMPREF0373_00489	Terminase small subunit	NA
UHGV-0077763_37	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0077763_37	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0077763_40	UniRef90	UniRef90_A0A3D2GX58	HTH cro/C1-type domain-containing protein	NA
UHGV-0077763_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0077763_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0077763_40	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0077763_41	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0077763_41	UniRef90	UniRef90_UPI000496DFC6	NA	NA
UHGV-0077763_41	eggNOG-mapper	1120978.KB894081_gene99	NA	NA
UHGV-0077763_41	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0077763_41	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0077763_44	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0077763_44	UniRef90	UniRef90_A0A3D5IDX7	DnaB_2 domain-containing protein	NA
UHGV-0077763_44	eggNOG-mapper	1139219.I569_00217	Replication initiation and membrane attachment	NA
UHGV-0077763_44	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0077763_44	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0077763_44	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0077763_44	Structural annotation	PF03444, MF_01911, TIGR01610, COG5529	NA	NA
UHGV-0077763_45	PHROG	phrog_4973	NA	unknown function
UHGV-0077763_45	UniRef90	UniRef90_A0A1W1YSW9	Helix-turn-helix domain-containing protein	NA
UHGV-0077763_45	eggNOG-mapper	1038869.AXAN01000006_gene942	Helix-turn-helix domain	NA
UHGV-0077763_45	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0077763_45	Structural annotation	PF14090, TIGR00373, COG4344	NA	NA
UHGV-0077763_47	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0077763_47	UniRef90	UniRef90_A0A416AFS0	NA	NA
UHGV-0077763_47	eggNOG-mapper	1236514.BAKL01000051_gene3708	NA	NA
UHGV-0077763_47	Pfam	PF06356	NA	DUF1064
UHGV-0077763_47	Structural annotation	PF06356	NA	NA
UHGV-0077763_48	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0077763_48	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0077763_48	UniRef90	UniRef90_G9WTJ7	Single-stranded DNA-binding protein	NA
UHGV-0077763_48	eggNOG-mapper	1235793.C809_02091	Single-strand binding protein family	NA
UHGV-0077763_48	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0077763_48	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0077763_48	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0077763_48	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0077763_53	Structural annotation	PF10656	NA	NA
UHGV-0077763_58	UniRef90	UniRef90_UPI0004E26D7B	helix-turn-helix transcriptional regulator	NA
UHGV-0077763_58	eggNOG-mapper	1121423.JONT01000002_gene2373	NA	NA
UHGV-0077763_58	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0077763_59	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0077763_60	eggNOG-mapper	431943.CKL_1820	NA	NA
UHGV-0077763_60	Structural annotation	PF19448	NA	NA
UHGV-0077763_61	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0077763_61	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-0077763_61	UniRef90	UniRef90_UPI00067EDF4A	XRE family transcriptional regulator	NA
UHGV-0077763_61	eggNOG-mapper	431943.CKL_1821	IrrE N-terminal-like domain	NA
UHGV-0077763_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0077763_61	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0077763_61	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0077763_61	Structural annotation	PF06114, PF01381, MF_00584, NF038139, COG2856, COG1476	NA	NA