UHGV-0077783

Genome information

Genome length 24,309 bps

CDS count 33

Completeness 62.05% (medium-quality)

geNomad score 0.9780

Prediction confidence Confident

Genome information
Genome ID	UHGV-0077783
vOTU ID	vOTU-041520
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_139818
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.05% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9780
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	66.88
Jumbo phage	No

Genome content
Genome length	24,309 bps
GC content	46.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	33
CDS density	94.02%
Average CDS length	696.09 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0077783_2	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0077783_2	UniRef90	UniRef90_UPI000465B5FC	NA	NA
UHGV-0077783_2	eggNOG-mapper	1302286.BAOT01000008_gene591	NA	NA
UHGV-0077783_2	AcrCatalog	cluster_1061	NA	NA
UHGV-0077783_2	Pfam	PF05037	NA	DUF669
UHGV-0077783_3	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0077783_3	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0077783_3	UniRef90	UniRef90_M5AG60	SF3 helicase domain-containing protein	NA
UHGV-0077783_3	eggNOG-mapper	1302286.BAOT01000008_gene592	Phage plasmid primase, P4	NA
UHGV-0077783_3	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0077783_3	Pfam	PF19263	NA	DUF5906
UHGV-0077783_3	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0077783_3	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0077783_3	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0077783_3	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF011296, COG3378, COG4983	NA	NA
UHGV-0077783_6	PHROG	phrog_236	nucleotide kinase	other
UHGV-0077783_6	UniRef90	UniRef90_A0A378HFG6	NA	NA
UHGV-0077783_6	eggNOG-mapper	1302286.BAOT01000008_gene594	NA	NA
UHGV-0077783_6	Pfam	PF11753	NA	DUF3310
UHGV-0077783_7	eggNOG-mapper	387344.LVIS_1120	NA	NA
UHGV-0077783_8	PHROG	phrog_1558	NA	unknown function
UHGV-0077783_8	UniRef90	UniRef90_A0A0R1HWT7	HTH_11 domain-containing protein	NA
UHGV-0077783_8	eggNOG-mapper	1302286.BAOT01000008_gene595	NA	NA
UHGV-0077783_8	Structural annotation	TIGR01637, COG2739	NA	NA
UHGV-0077783_9	PHROG	phrog_13702	terminase large subunit	head and packaging
UHGV-0077783_9	UniRef90	UniRef90_UPI000C9F3A63	terminase	NA
UHGV-0077783_9	eggNOG-mapper	257314.LJ_1441	NA	NA
UHGV-0077783_10	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0077783_10	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0077783_10	UniRef90	UniRef90_UPI00165E8121	HNH endonuclease	NA
UHGV-0077783_10	eggNOG-mapper	315730.BcerKBAB4_3417	regulation of methylation-dependent chromatin silencing	NA
UHGV-0077783_10	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0077783_10	COG	COG3440	Predicted restriction endonuclease	NA
UHGV-0077783_11	PHROG	phrog_2538	terminase small subunit	head and packaging
UHGV-0077783_11	UniRef90	UniRef90_UPI001942F57C	phBC6A51 family helix-turn-helix protein	NA
UHGV-0077783_11	eggNOG-mapper	1140002.I570_01447	Helix-turn-helix of insertion element transposase	NA
UHGV-0077783_11	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-0077783_12	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0077783_12	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0077783_12	UniRef90	UniRef90_A0A0R1I172	PBSX family phage terminase large subunit	NA
UHGV-0077783_12	eggNOG-mapper	1302286.BAOT01000008_gene597	Terminase RNAseH like domain	NA
UHGV-0077783_12	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0077783_12	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0077783_12	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0077783_12	COG	COG1783	Phage terminase large subunit	NA
UHGV-0077783_12	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0077783_13	PHROG	phrog_64	portal protein	head and packaging
UHGV-0077783_13	UniRef90	UniRef90_M5AH83	Portal protein	NA
UHGV-0077783_13	eggNOG-mapper	1302286.BAOT01000008_gene598	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0077783_13	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0077783_13	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0077783_14	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0077783_14	UniRef90	UniRef90_M5AG27	NA	NA
UHGV-0077783_14	eggNOG-mapper	1302286.BAOT01000008_gene599	Phage Mu protein F like protein	NA
UHGV-0077783_14	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0077783_14	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0077783_14	COG	COG2369	NA	NA
UHGV-0077783_15	PHROG	phrog_3675	NA	unknown function
UHGV-0077783_15	UniRef90	UniRef90_I7K070	YjcQ protein	NA
UHGV-0077783_15	eggNOG-mapper	1118055.CAGU01000029_gene13	YjcQ protein	NA
UHGV-0077783_15	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0077783_15	Structural annotation	PF09639, TIGR04176, COG1695	NA	NA
UHGV-0077783_16	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0077783_16	UniRef90	UniRef90_A0A378HF91	Scaffolding protein	NA
UHGV-0077783_16	eggNOG-mapper	1302286.BAOT01000008_gene600	Phage minor structural protein GP20	NA
UHGV-0077783_16	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0077783_16	Structural annotation	PF06810	NA	NA
UHGV-0077783_17	PHROG	phrog_422	major head protein	head and packaging
UHGV-0077783_17	UniRef90	UniRef90_M5B1G7	Phage Capsid protein	NA
UHGV-0077783_17	eggNOG-mapper	363555.Q20DD4_9CAUD	NA	NA
UHGV-0077783_17	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0077783_18	PHROG	phrog_12526	NA	unknown function
UHGV-0077783_18	UniRef90	UniRef90_C9B4L7	Predicted protein	NA
UHGV-0077783_18	eggNOG-mapper	1140001.I571_01752	NA	NA
UHGV-0077783_19	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0077783_19	eggNOG-mapper	1302286.BAOT01000008_gene603	NA	NA
UHGV-0077783_19	Structural annotation	PF05135	NA	NA
UHGV-0077783_20	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0077783_20	UniRef90	UniRef90_M5AG47	Phage Related protein	NA
UHGV-0077783_20	eggNOG-mapper	1302286.BAOT01000008_gene604	NA	NA
UHGV-0077783_20	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0077783_21	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0077783_21	UniRef90	UniRef90_UPI00070E43FC	HK97 gp10 family phage protein	NA
UHGV-0077783_21	eggNOG-mapper	1302286.BAOT01000008_gene605	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0077783_21	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0077783_21	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0077783_22	PHROG	phrog_525	NA	unknown function
UHGV-0077783_22	eggNOG-mapper	1302286.BAOT01000008_gene606	NA	NA
UHGV-0077783_22	Pfam	PF20765	NA	DUF6838
UHGV-0077783_22	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0077783_23	PHROG	phrog_966	NA	unknown function
UHGV-0077783_23	eggNOG-mapper	324831.LGAS_0615	NA	NA
UHGV-0077783_24	PHROG	phrog_279	tail sheath	tail
UHGV-0077783_24	UniRef90	UniRef90_M5AG20	Phage-like element PBSX protein xkdK	NA
UHGV-0077783_24	eggNOG-mapper	1302286.BAOT01000008_gene607	Phage tail sheath C-terminal domain	NA
UHGV-0077783_24	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0077783_24	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0077783_24	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0077783_24	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0077783_25	PHROG	phrog_365	tail protein	tail
UHGV-0077783_25	UniRef90	UniRef90_M5AG42	Phage-like element PBSX protein xkdM	NA
UHGV-0077783_25	eggNOG-mapper	1302286.BAOT01000008_gene608	Phage tail tube protein	NA
UHGV-0077783_25	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0077783_25	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0077783_26	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0077783_26	UniRef90	UniRef90_M5AHF4	XkdN-Like protein	NA
UHGV-0077783_26	eggNOG-mapper	1302286.BAOT01000008_gene609	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0077783_26	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0077783_26	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0077783_27	PHROG	phrog_1204	tail protein	tail
UHGV-0077783_27	UniRef90	UniRef90_M5AH66	Minor Tail	NA
UHGV-0077783_27	eggNOG-mapper	1302286.BAOT01000008_gene610	phage tail tape measure protein	NA
UHGV-0077783_27	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0077783_27	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0077783_27	COG	COG5283	Phage-related tail protein	NA
UHGV-0077783_28	PHROG	phrog_380	endolysin	lysis
UHGV-0077783_28	UniRef90	UniRef90_A0A378HGH1	Phage related protein	NA
UHGV-0077783_28	eggNOG-mapper	1302286.BAOT01000008_gene611	protein containing LysM domain	NA
UHGV-0077783_28	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0077783_28	Structural annotation	PF21821, TIGR02126, COG5437	NA	NA
UHGV-0077783_29	PHROG	phrog_400	tail protein	tail
UHGV-0077783_29	UniRef90	UniRef90_A0A2T4XRJ3	Late control protein D	NA
UHGV-0077783_29	eggNOG-mapper	1302286.BAOT01000008_gene612	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0077783_29	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0077783_29	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0077783_30	PHROG	phrog_579	NA	unknown function
UHGV-0077783_30	UniRef90	UniRef90_A0A2T4XRK3	NA	NA
UHGV-0077783_30	eggNOG-mapper	1302286.BAOT01000008_gene613	NA	NA
UHGV-0077783_30	Pfam	PF10844	NA	DUF2577
UHGV-0077783_30	Structural annotation	PF10844, MF_00085, TIGR00008, COG0361	NA	NA
UHGV-0077783_31	PHROG	phrog_120	baseplate protein	tail
UHGV-0077783_31	UniRef90	UniRef90_A0A2T4XRJ6	NA	NA
UHGV-0077783_31	eggNOG-mapper	1302286.BAOT01000008_gene614	NA	NA
UHGV-0077783_31	Pfam	PF10934	NA	DUF2634
UHGV-0077783_31	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0077783_31	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0077783_32	PHROG	phrog_6	baseplate protein	tail
UHGV-0077783_32	UniRef90	UniRef90_A0A2T4XRM3	Baseplate_J domain-containing protein	NA
UHGV-0077783_32	eggNOG-mapper	1423758.BN55_00085	Baseplate J-like protein	NA
UHGV-0077783_32	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0077783_32	COG	COG3299	NA	NA
UHGV-0077783_32	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0077783_33	PHROG	phrog_521	tail protein	tail
UHGV-0077783_33	UniRef90	UniRef90_UPI0019412191	NA	NA
UHGV-0077783_33	eggNOG-mapper	1302286.BAOT01000008_gene616	NA	NA
UHGV-0077783_33	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48