UHGV-0077869

Genome information

Genome length 29,689 bps

CDS count 57

Completeness 72.66% (medium-quality)

geNomad score 0.9814

Prediction confidence Confident

Genome information
Genome ID	UHGV-0077869
vOTU ID	vOTU-029385
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_138368
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.66% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9814
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.41
Jumbo phage	No

Genome content
Genome length	29,689 bps
GC content	53.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	90.72%
Average CDS length	479.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0077869_2	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0077869_6	eggNOG-mapper	537013.CLOSTMETH_01718	NA	NA
UHGV-0077869_7	Structural annotation	PF09943	NA	NA
UHGV-0077869_9	PHROG	phrog_862	NA	unknown function
UHGV-0077869_9	eggNOG-mapper	279238.Saro_3022	NA	NA
UHGV-0077869_9	Structural annotation	PF05037, COG2965	NA	NA
UHGV-0077869_10	PHROG	phrog_15768	NA	unknown function
UHGV-0077869_10	UniRef90	UniRef90_UPI00189C2664	NA	NA
UHGV-0077869_10	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-0077869_10	Pfam	PF19808	NA	DUF6291
UHGV-0077869_10	Structural annotation	PF19808	NA	NA
UHGV-0077869_11	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0077869_11	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0077869_11	UniRef90	UniRef90_UPI0018973262	AAA family ATPase	NA
UHGV-0077869_11	eggNOG-mapper	742738.HMPREF9460_00852	Participates in initiation and elongation during chromosome replication	NA
UHGV-0077869_11	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0077869_11	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0077869_11	COG	COG0305	Replicative DNA helicase	NA
UHGV-0077869_11	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0077869_13	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0077869_13	PHROG	phrog_4632	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0077869_13	UniRef90	UniRef90_A0A1V5ZUM0	Endodeoxyribonuclease RusA	NA
UHGV-0077869_13	eggNOG-mapper	469604.HMPREF0946_00819	NA	NA
UHGV-0077869_13	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0077869_14	Structural annotation	PF12759	NA	NA
UHGV-0077869_15	PHROG	phrog_10714	NA	unknown function
UHGV-0077869_15	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-0077869_15	eggNOG-mapper	1226322.HMPREF1545_00023	NA	NA
UHGV-0077869_17	PHROG	phrog_25732	NA	unknown function
UHGV-0077869_17	Structural annotation	NF011227	NA	NA
UHGV-0077869_18	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0077869_18	UniRef90	UniRef90_A0A316S3E3	Reductase	NA
UHGV-0077869_18	eggNOG-mapper	1235835.C814_01169	NA	NA
UHGV-0077869_18	PADLOC	SspD_00001	SspD	SSP
UHGV-0077869_18	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0077869_19	Structural annotation	NF000937	NA	NA
UHGV-0077869_20	PHROG	phrog_37865	NA	unknown function
UHGV-0077869_21	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0077869_22	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0077869_22	UniRef90	UniRef90_UPI0013002188	helix-turn-helix transcriptional regulator	NA
UHGV-0077869_22	eggNOG-mapper	500635.MITSMUL_03105	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0077869_22	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0077869_29	PHROG	phrog_924	NA	unknown function
UHGV-0077869_29	UniRef90	UniRef90_A0A6I7G0Z3	NA	NA
UHGV-0077869_29	Pfam	PF04448	NA	DUF551
UHGV-0077869_29	Structural annotation	NF041588	NA	NA
UHGV-0077869_30	UniRef90	UniRef90_A0A4Y3TFR4	HTH cro/C1-type domain-containing protein	NA
UHGV-0077869_30	eggNOG-mapper	742738.HMPREF9460_00886	NA	NA
UHGV-0077869_31	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0077869_31	UniRef90	UniRef90_A0A6N3FXW7	Helix-turn-helix	NA
UHGV-0077869_31	eggNOG-mapper	742738.HMPREF9460_04059	Helix-turn-helix XRE-family like proteins	NA
UHGV-0077869_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0077869_31	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0077869_31	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0077869_33	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0077869_33	UniRef90	UniRef90_A0A1V0QCE9	Bro-N domain-containing protein	NA
UHGV-0077869_33	eggNOG-mapper	573061.Clocel_3580	Phage antirepressor protein	NA
UHGV-0077869_33	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0077869_33	COG	COG3617	Prophage antirepressor	NA
UHGV-0077869_33	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0077869_34	UniRef90	UniRef90_UPI0018A8F249	helix-turn-helix domain containing protein	NA
UHGV-0077869_34	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-0077869_34	Structural annotation	PF13542	NA	NA
UHGV-0077869_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0077869_35	PHROG	phrog_10250	NA	unknown function
UHGV-0077869_35	UniRef90	UniRef90_UPI0018A99FCF	PBSX family phage terminase large subunit	NA
UHGV-0077869_35	eggNOG-mapper	476272.RUMHYD_01756	NA	NA
UHGV-0077869_35	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0077869_35	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0077869_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-0077869_35	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0077869_36	PHROG	phrog_64	portal protein	head and packaging
UHGV-0077869_36	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0077869_36	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0077869_36	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0077869_36	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0077869_37	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0077869_37	UniRef90	UniRef90_UPI0018AAFC07	minor capsid protein	NA
UHGV-0077869_37	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0077869_37	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0077869_37	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0077869_37	COG	COG2369	NA	NA
UHGV-0077869_37	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0077869_38	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0077869_38	UniRef90	UniRef90_UPI0018AA0B5A	HK97 gp10 family phage protein	NA
UHGV-0077869_38	eggNOG-mapper	1280685.AUKC01000004_gene1630	NA	NA
UHGV-0077869_38	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0077869_38	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0077869_38	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0077869_40	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0077869_40	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0077869_40	Structural annotation	PF06810	NA	NA
UHGV-0077869_41	PHROG	phrog_544	major head protein	head and packaging
UHGV-0077869_41	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0077869_41	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0077869_41	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0077869_42	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0077869_42	PHROG	phrog_34916	tail fiber protein	tail
UHGV-0077869_42	UniRef90	UniRef90_UPI0018A8F63F	collagen-like protein	NA
UHGV-0077869_42	eggNOG-mapper	1203606.HMPREF1526_01905	Collagen triple helix repeat (20 copies)	NA
UHGV-0077869_42	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0077869_42	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0077869_44	PHROG	phrog_17977	NA	unknown function
UHGV-0077869_44	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-0077869_44	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0077869_45	PHROG	phrog_1233	NA	unknown function
UHGV-0077869_45	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0077869_45	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0077869_46	PHROG	phrog_17405	head protein	head and packaging
UHGV-0077869_46	Structural annotation	PF11367	NA	NA
UHGV-0077869_47	PHROG	phrog_885	major tail protein	tail
UHGV-0077869_47	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0077869_47	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0077869_47	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0077869_48	PHROG	phrog_18646	NA	unknown function
UHGV-0077869_50	PHROG	phrog_23464	NA	unknown function
UHGV-0077869_50	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0077869_50	COG	COG5283	Phage-related tail protein	NA
UHGV-0077869_50	Structural annotation	PF20155	NA	NA
UHGV-0077869_51	eggNOG-mapper	1235797.C816_02660	NA	NA
UHGV-0077869_51	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0077869_52	PHROG	phrog_13879	NA	unknown function
UHGV-0077869_52	eggNOG-mapper	1235797.C816_02659	NA	NA
UHGV-0077869_52	Structural annotation	PF14594, PF06588, NF033848, COG4379, COG5156	NA	NA
UHGV-0077869_54	PHROG	phrog_11157	NA	unknown function
UHGV-0077869_54	UniRef90	UniRef90_G9YSD2	Big_13 domain-containing protein	NA
UHGV-0077869_54	eggNOG-mapper	1235797.C816_02657	NA	NA
UHGV-0077869_54	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0077869_54	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0077869_54	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0077869_54	Structural annotation	PF09136, PF13750, MF_04116, NF032891, COG2372	NA	NA