UHGV-0077954

Genome information

Genome length 41,008 bps

CDS count 53

Completeness 99.90% (high-quality)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-0077954
vOTU ID	vOTU-063757
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_158968
BioSample	SAMEA3136697
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.16
Jumbo phage	No

Genome content
Genome length	41,008 bps
GC content	45.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	93.79%
Average CDS length	731.09 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0077954_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0077954_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0077954_1	UniRef90	UniRef90_C9LP68	Resolvase, N-terminal domain protein	NA
UHGV-0077954_1	eggNOG-mapper	592028.GCWU000321_01347	overlaps another CDS with the same product name	NA
UHGV-0077954_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0077954_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0077954_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0077954_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0077954_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0077954_2	eggNOG-mapper	742743.HMPREF9453_01874	NA	NA
UHGV-0077954_2	Structural annotation	PF12007	NA	NA
UHGV-0077954_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0077954_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0077954_3	UniRef90	UniRef90_UPI00065A9B8A	helix-turn-helix domain-containing protein	NA
UHGV-0077954_3	eggNOG-mapper	1000569.HMPREF1040_0220	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0077954_3	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0077954_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0077954_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0077954_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0077954_3	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974, COG1476	NA	NA
UHGV-0077954_4	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0077954_4	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0077954_4	UniRef90	UniRef90_A0A0J6ZQ79	HTH cro/C1-type domain-containing protein	NA
UHGV-0077954_4	eggNOG-mapper	718252.FP2_16270	sequence-specific DNA binding	NA
UHGV-0077954_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0077954_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0077954_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0077954_4	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0077954_6	PHROG	phrog_14367	NA	unknown function
UHGV-0077954_6	UniRef90	UniRef90_A0A1G5VJC5	LysM domain-containing protein	NA
UHGV-0077954_6	eggNOG-mapper	568816.Acin_1401	LysM domain	NA
UHGV-0077954_6	COG	COG1388	LysM repeat	NA
UHGV-0077954_6	Structural annotation	PF01476, MF_02014, NF010723, COG1388	NA	NA
UHGV-0077954_8	Structural annotation	PF14282, TIGR03090	NA	NA
UHGV-0077954_9	UniRef90	UniRef90_UPI00195D57F8	3D domain-containing protein	NA
UHGV-0077954_9	eggNOG-mapper	883156.HMPREF9282_00524	3D domain protein	NA
UHGV-0077954_9	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0077954_9	Structural annotation	PF03330, MF_02071, TIGR00413, COG3584	NA	NA
UHGV-0077954_12	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0077954_12	UniRef90	UniRef90_A0A6L6TPV7	NA	NA
UHGV-0077954_12	eggNOG-mapper	1273103.NM10_03246	NA	NA
UHGV-0077954_12	Pfam	PF10926	NA	DUF2800
UHGV-0077954_12	COG	COG2887	RecB family exonuclease	NA
UHGV-0077954_12	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0077954_13	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0077954_13	UniRef90	UniRef90_A0A6L6TS11	NA	NA
UHGV-0077954_13	eggNOG-mapper	742743.HMPREF9453_00579	NA	NA
UHGV-0077954_13	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0077954_13	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0077954_14	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0077954_14	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0077954_14	UniRef90	UniRef90_A0A6L6TPY0	POLAc domain-containing protein	NA
UHGV-0077954_14	eggNOG-mapper	883156.HMPREF9282_00936	DNA polymerase	NA
UHGV-0077954_14	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0077954_14	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0077954_14	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0077954_15	Structural annotation	PF18822	NA	NA
UHGV-0077954_16	PHROG	phrog_16315	NA	unknown function
UHGV-0077954_16	UniRef90	UniRef90_UPI0018C6CEB5	PcfJ domain-containing protein	NA
UHGV-0077954_16	eggNOG-mapper	1262914.BN533_00797	PcfJ-like protein	NA
UHGV-0077954_16	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0077954_16	Structural annotation	PF14284	NA	NA
UHGV-0077954_17	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0077954_17	UniRef90	UniRef90_A0A1G9QU34	Virulence-associated protein E	NA
UHGV-0077954_17	eggNOG-mapper	883156.HMPREF9282_00939	Virulence-associated protein E	NA
UHGV-0077954_17	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0077954_17	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0077954_17	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0077954_18	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0077954_18	UniRef90	UniRef90_A0A6L6TS93	VRR-NUC domain-containing protein	NA
UHGV-0077954_18	eggNOG-mapper	86416.Clopa_0565	VRR-NUC domain-containing protein	NA
UHGV-0077954_18	Structural annotation	PF08774, MF_00130, NF002584	NA	NA
UHGV-0077954_19	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0077954_19	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0077954_19	UniRef90	UniRef90_A0A6L6TN95	DEAD/DEAH box helicase	NA
UHGV-0077954_19	eggNOG-mapper	883156.HMPREF9282_00941	SNF2 family	NA
UHGV-0077954_19	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0077954_19	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0077954_19	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0077954_19	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0077954_19	Structural annotation	PF16203, PF04851, MF_01821, NF041790, COG0553	NA	NA
UHGV-0077954_21	PHROG	phrog_236	nucleotide kinase	other
UHGV-0077954_21	UniRef90	UniRef90_A0A6L6TNP4	NA	NA
UHGV-0077954_21	eggNOG-mapper	1003200.AXXA_28145	NA	NA
UHGV-0077954_21	Pfam	PF11753	NA	DUF3310
UHGV-0077954_22	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0077954_22	UniRef90	UniRef90_UPI001CD33068	NA	NA
UHGV-0077954_22	eggNOG-mapper	592028.GCWU000321_01368	NA	NA
UHGV-0077954_22	Pfam	PF07374	NA	DUF1492
UHGV-0077954_22	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0077954_23	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0077954_23	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0077954_23	UniRef90	UniRef90_UPI000F8CDB0C	terminase small subunit	NA
UHGV-0077954_23	eggNOG-mapper	883156.HMPREF9282_00945	terminase, small subunit	NA
UHGV-0077954_23	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0077954_23	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0077954_23	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0077954_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0077954_24	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0077954_24	UniRef90	UniRef90_A0A316LP82	PBSX family phage terminase large subunit	NA
UHGV-0077954_24	eggNOG-mapper	1123511.KB905868_gene187	Phage terminase large subunit	NA
UHGV-0077954_24	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0077954_24	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0077954_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0077954_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0077954_24	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0077954_25	PHROG	phrog_145	portal protein	head and packaging
UHGV-0077954_25	UniRef90	UniRef90_R6WQ48	Conserved domain protein	NA
UHGV-0077954_25	eggNOG-mapper	706434.HMPREF9429_00529	NA	NA
UHGV-0077954_25	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0077954_26	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0077954_26	UniRef90	UniRef90_R7PPR8	Ntox50 domain-containing protein	NA
UHGV-0077954_26	eggNOG-mapper	1123489.AUAN01000010_gene362	NA	NA
UHGV-0077954_26	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0077954_28	UniRef90	UniRef90_A0A6N3AJF1	Chromosome partition protein Smc	NA
UHGV-0077954_28	eggNOG-mapper	888060.HMPREF9081_1551	NA	NA
UHGV-0077954_28	Structural annotation	PF06810	NA	NA
UHGV-0077954_29	PHROG	phrog_212	major head protein	head and packaging
UHGV-0077954_29	UniRef90	UniRef90_A0A7Z0TEG2	Phage capsid protein	NA
UHGV-0077954_29	eggNOG-mapper	1122918.KB907248_gene4499	NA	NA
UHGV-0077954_29	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0077954_30	PHROG	phrog_15682	NA	unknown function
UHGV-0077954_30	UniRef90	UniRef90_A0A7C6KAU2	Rho_N domain-containing protein	NA
UHGV-0077954_30	eggNOG-mapper	1294142.CINTURNW_1030	NA	NA
UHGV-0077954_31	UniRef90	UniRef90_A0A7R6VQ40	Phage tail protein	NA
UHGV-0077954_31	eggNOG-mapper	387092.NIS_0469	Phage virion morphogenesis	NA
UHGV-0077954_31	COG	COG5005	NA	NA
UHGV-0077954_31	Structural annotation	TIGR01725	NA	NA
UHGV-0077954_32	PHROG	phrog_19017	NA	unknown function
UHGV-0077954_32	eggNOG-mapper	1123489.AUAN01000010_gene356	NA	NA
UHGV-0077954_33	PHROG	phrog_18864	NA	unknown function
UHGV-0077954_33	eggNOG-mapper	706434.HMPREF9429_00521	NA	NA
UHGV-0077954_33	Structural annotation	PF06141, COG5003	NA	NA
UHGV-0077954_34	PHROG	phrog_290	minor tail protein	tail
UHGV-0077954_34	UniRef90	UniRef90_UPI00195F5747	phage tail tube protein	NA
UHGV-0077954_34	eggNOG-mapper	888060.HMPREF9081_1545	NA	NA
UHGV-0077954_34	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-0077954_34	Structural annotation	PF18906, TIGR02241, TIGR02126, COG5437, COG3498	NA	NA
UHGV-0077954_35	eggNOG-mapper	888060.HMPREF9081_1542	NA	NA
UHGV-0077954_36	PHROG	phrog_680	tail length tape measure protein	tail
UHGV-0077954_36	UniRef90	UniRef90_UPI001D09F5D4	NA	NA
UHGV-0077954_36	eggNOG-mapper	1123489.AUAN01000010_gene352	NA	NA
UHGV-0077954_36	Pfam	PF08809	NA	DUF1799
UHGV-0077954_36	Structural annotation	PF08809	NA	NA
UHGV-0077954_37	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0077954_37	UniRef90	UniRef90_UPI000422D822	tape measure protein	NA
UHGV-0077954_37	eggNOG-mapper	1123489.AUAN01000010_gene351	tape measure	NA
UHGV-0077954_37	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0077954_37	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0077954_37	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0077954_37	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0077954_38	eggNOG-mapper	1009370.ALO_04658	NA	NA
UHGV-0077954_38	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0077954_39	PHROG	phrog_18	minor tail protein	tail
UHGV-0077954_39	UniRef90	UniRef90_A0A380N670	Phage minor tail protein L	NA
UHGV-0077954_39	eggNOG-mapper	1128111.HMPREF0870_01758	Phage minor tail protein L	NA
UHGV-0077954_39	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-0077954_39	COG	COG4672	Phage tail protein	NA
UHGV-0077954_39	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-0077954_40	PHROG	phrog_329	minor tail protein	tail
UHGV-0077954_40	UniRef90	UniRef90_A0A380N793	NlpC/P60 family	NA
UHGV-0077954_40	eggNOG-mapper	1128111.HMPREF0870_01757	cysteine-type peptidase activity	NA
UHGV-0077954_40	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0077954_40	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0077954_40	Structural annotation	PF00877, NF008096, COG3234	NA	NA
UHGV-0077954_41	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-0077954_41	UniRef90	UniRef90_F5KZP0	Fibronectin type III domain protein	NA
UHGV-0077954_41	eggNOG-mapper	1128111.HMPREF0870_01756	gp58-like protein	NA
UHGV-0077954_41	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0077954_41	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-0077954_41	COG	COG1511	NA	NA
UHGV-0077954_41	Structural annotation	PF13550, PF00041, PF09294, PF17936, PF14109, NF040662, NF041335, COG4733	NA	NA
UHGV-0077954_43	PHROG	phrog_33356	NA	unknown function
UHGV-0077954_43	eggNOG-mapper	1111454.HMPREF1250_0267	NA	NA
UHGV-0077954_45	Structural annotation	PF00677	NA	NA
UHGV-0077954_46	UniRef90	UniRef90_A0A6L6TSJ6	Peptidase	NA
UHGV-0077954_46	eggNOG-mapper	484770.UFO1_1718	NA	NA
UHGV-0077954_48	PHROG	phrog_5867	endolysin	lysis
UHGV-0077954_48	UniRef90	UniRef90_C9LPB8	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0077954_48	eggNOG-mapper	592028.GCWU000321_01397	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0077954_48	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0077954_48	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0077954_48	Structural annotation	MF_04111	NA	NA
UHGV-0077954_53	PHROG	phrog_888	NA	unknown function
UHGV-0077954_53	UniRef90	UniRef90_C9LPC5	SHOCT domain-containing protein	NA
UHGV-0077954_53	eggNOG-mapper	592028.GCWU000321_01404	NA	NA
UHGV-0077954_53	Pfam	PF09851	Short C-terminal domain	SHOCT