UHGV-0077958

Genome information

Genome length 59,856 bps

CDS count 103

Completeness 99.90% (high-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0077958
vOTU ID	vOTU-068990
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_158947
BioSample	NA
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	46.41
Jumbo phage	No

Genome content
Genome length	59,856 bps
GC content	38.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	103
CDS density	87.64%
Average CDS length	512.97 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0077958_1	KOfam	K14059	int; integrase	NA
UHGV-0077958_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0077958_1	UniRef90	UniRef90_A0A412RQS9	Site-specific integrase	NA
UHGV-0077958_1	eggNOG-mapper	1235799.C818_02711	Phage integrase family	NA
UHGV-0077958_1	Pfam	PF02920	DNA binding domain of tn916 integrase	Integrase_DNA
UHGV-0077958_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0077958_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0077958_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0077958_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0077958_2	PHROG	phrog_16129	excisionase	integration and excision
UHGV-0077958_2	UniRef90	UniRef90_A0A412RR26	HTH luxR-type domain-containing protein	NA
UHGV-0077958_2	eggNOG-mapper	1121296.JONJ01000009_gene671	Excisionase from transposon Tn916	NA
UHGV-0077958_2	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0077958_2	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-0077958_2	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0077958_2	Structural annotation	PF09035, PF00196, MF_00674, NF033787, NF008895, COG2771	NA	NA
UHGV-0077958_4	Structural annotation	PF09889, MF_00649	NA	NA
UHGV-0077958_5	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0077958_5	eggNOG-mapper	658655.HMPREF0988_00884	NA	NA
UHGV-0077958_5	AcrCatalog	cluster_47493	NA	NA
UHGV-0077958_5	Structural annotation	PF00145, MF_00341, COG0270	NA	NA
UHGV-0077958_7	PHROG	phrog_10714	NA	unknown function
UHGV-0077958_10	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0077958_13	PHROG	phrog_22292	NA	unknown function
UHGV-0077958_18	PHROG	phrog_9804	NA	unknown function
UHGV-0077958_18	UniRef90	UniRef90_A0A412RQW3	Inhibitor_G39P domain-containing protein	NA
UHGV-0077958_18	eggNOG-mapper	903814.ELI_3550	Loader and inhibitor of phage G40P	NA
UHGV-0077958_18	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0077958_18	Structural annotation	PF11417	NA	NA
UHGV-0077958_19	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0077958_19	UniRef90	UniRef90_UPI0018994D15	replisome organizer	NA
UHGV-0077958_19	eggNOG-mapper	1415774.U728_867	DnaD domain protein	NA
UHGV-0077958_19	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0077958_19	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0077958_21	eggNOG-mapper	397290.C810_01505	NA	NA
UHGV-0077958_22	PHROG	phrog_19106	NA	unknown function
UHGV-0077958_22	UniRef90	UniRef90_A0A412RQV5	GIY-YIG nuclease family protein	NA
UHGV-0077958_22	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0077958_22	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0077958_22	Structural annotation	TIGR01453	NA	NA
UHGV-0077958_23	PHROG	phrog_9804	NA	unknown function
UHGV-0077958_23	eggNOG-mapper	1410650.JHWL01000003_gene2847	Loader and inhibitor of phage G40P	NA
UHGV-0077958_23	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0077958_24	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0077958_24	eggNOG-mapper	290402.Cbei_3733	DnaD domain protein	NA
UHGV-0077958_24	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0077958_26	PHROG	phrog_19106	NA	unknown function
UHGV-0077958_26	UniRef90	UniRef90_R6RVQ6	GIY-YIG domain-containing protein	NA
UHGV-0077958_26	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0077958_26	Structural annotation	TIGR01453	NA	NA
UHGV-0077958_27	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0077958_27	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0077958_27	UniRef90	UniRef90_A0A1G5ET13	Methyltransferase	NA
UHGV-0077958_27	eggNOG-mapper	1122243.KB903771_gene1539	DNA methylase	NA
UHGV-0077958_27	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0077958_27	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0077958_27	COG	COG0863	DNA modification methylase	NA
UHGV-0077958_27	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0077958_28	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0077958_28	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0077958_28	UniRef90	UniRef90_A0A412RR48	Single-stranded DNA-binding protein	NA
UHGV-0077958_28	eggNOG-mapper	397290.C810_01495	Single-strand binding protein family	NA
UHGV-0077958_28	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0077958_28	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0077958_28	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0077958_28	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0077958_28	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0077958_29	PHROG	phrog_7545	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0077958_29	UniRef90	UniRef90_UPI0013794BCD	HNH endonuclease	NA
UHGV-0077958_29	eggNOG-mapper	864702.OsccyDRAFT_0645	HNH endonuclease	NA
UHGV-0077958_29	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0077958_29	Structural annotation	PF13392	NA	NA
UHGV-0077958_30	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0077958_30	UniRef90	UniRef90_A0A412RQX2	MBL fold metallo-hydrolase	NA
UHGV-0077958_30	eggNOG-mapper	1232453.BAIF02000057_gene1138	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0077958_30	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0077958_30	Structural annotation	PF02112, MF_00457, NF041851, COG2220	NA	NA
UHGV-0077958_31	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0077958_31	UniRef90	UniRef90_R7BIJ8	Putative phage-related hydrolase	NA
UHGV-0077958_31	eggNOG-mapper	1122985.HMPREF1991_02241	NA	NA
UHGV-0077958_31	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0077958_31	dbAPIS	APIS001	NA	NA
UHGV-0077958_31	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0077958_33	PHROG	phrog_25456	NA	unknown function
UHGV-0077958_34	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0077958_34	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0077958_34	UniRef90	UniRef90_A0A317UEK3	Recombinase RecT	NA
UHGV-0077958_34	eggNOG-mapper	1298920.KI911353_gene2727	RecT family	NA
UHGV-0077958_34	Pfam	PF03837	RecT family	RecT
UHGV-0077958_34	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0077958_34	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0077958_34	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0077958_36	PHROG	phrog_2164	NA	unknown function
UHGV-0077958_36	eggNOG-mapper	1174684.EBMC1_14695	NA	NA
UHGV-0077958_37	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0077958_37	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0077958_37	UniRef90	UniRef90_A0A412RQV0	AAA_23 domain-containing protein	NA
UHGV-0077958_37	eggNOG-mapper	397290.C810_01461	nuclear chromosome segregation	NA
UHGV-0077958_37	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0077958_37	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0077958_40	eggNOG-mapper	742765.HMPREF9457_03017	peptidase	NA
UHGV-0077958_40	COG	COG4942	Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB	NA
UHGV-0077958_41	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0077958_41	UniRef90	UniRef90_A0A412RQX1	Phage repressor protein	NA
UHGV-0077958_41	eggNOG-mapper	1449343.JQLQ01000002_gene1556	BRO family, N-terminal domain	NA
UHGV-0077958_41	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0077958_41	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0077958_41	COG	COG3617	Prophage antirepressor	NA
UHGV-0077958_41	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0077958_44	UniRef90	UniRef90_A0A395X814	XRE family transcriptional regulator	NA
UHGV-0077958_44	eggNOG-mapper	1121289.JHVL01000079_gene1187	Helix-turn-helix XRE-family like proteins	NA
UHGV-0077958_44	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0077958_44	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0077958_45	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0077958_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0077958_45	UniRef90	UniRef90_A0A395X7H2	XRE family transcriptional regulator	NA
UHGV-0077958_45	eggNOG-mapper	397288.C806_00131	Transcriptional	NA
UHGV-0077958_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0077958_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0077958_45	Structural annotation	PF01381, MF_02017, NF041951, COG3655	NA	NA
UHGV-0077958_46	UniRef90	UniRef90_A0A8D9UIV6	RNAse domain protein	NA
UHGV-0077958_48	PHROG	phrog_806	NA	unknown function
UHGV-0077958_48	UniRef90	UniRef90_A0A395Z832	NA	NA
UHGV-0077958_48	eggNOG-mapper	1280676.AUJO01000001_gene2313	NA	NA
UHGV-0077958_48	Pfam	PF11611	NA	DUF4352
UHGV-0077958_48	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0077958_49	UniRef90	UniRef90_A0A349YRM6	XkdX family protein	NA
UHGV-0077958_49	eggNOG-mapper	411468.CLOSCI_01507	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0077958_49	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0077958_49	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0077958_50	PHROG	phrog_20201	NA	unknown function
UHGV-0077958_51	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0077958_51	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0077958_51	UniRef90	UniRef90_A0A1M7SMD9	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0077958_51	eggNOG-mapper	665956.HMPREF1032_00691	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0077958_51	PADLOC	drt-UG17	DRT	DRT
UHGV-0077958_51	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0077958_51	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0077958_51	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0077958_52	PHROG	phrog_5302	tail protein	tail
UHGV-0077958_52	UniRef90	UniRef90_A0A345BPB9	Lectin	NA
UHGV-0077958_52	eggNOG-mapper	665956.HMPREF1032_00690	NA	NA
UHGV-0077958_52	Structural annotation	COG1262	NA	NA
UHGV-0077958_53	eggNOG-mapper	476272.RUMHYD_01994	NA	NA
UHGV-0077958_53	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-0077958_54	PHROG	phrog_6616	tail protein	tail
UHGV-0077958_54	UniRef90	UniRef90_A0A412RR71	Tail fiber domain-containing protein	NA
UHGV-0077958_54	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-0077958_54	Structural annotation	PF05113, PF18957, NF033848, NF038186, COG4379, COG5513	NA	NA
UHGV-0077958_55	PHROG	phrog_1194	NA	unknown function
UHGV-0077958_55	eggNOG-mapper	997830.HMPREF1124_0608	NA	NA
UHGV-0077958_55	Pfam	PF20458	NA	DUF6711
UHGV-0077958_55	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0077958_56	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0077958_56	eggNOG-mapper	1151292.QEW_2423	phage tail tape measure protein	NA
UHGV-0077958_56	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0077958_57	KOfam	K07273	acm; lysozyme	NA
UHGV-0077958_57	PHROG	phrog_291	endolysin	lysis
UHGV-0077958_57	UniRef90	UniRef90_A0A174GRH8	Autolytic lysozyme	NA
UHGV-0077958_57	eggNOG-mapper	1235800.C819_00458	Glycosyl hydrolases family 25	NA
UHGV-0077958_57	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0077958_57	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0077958_57	Structural annotation	PF01183, PF01471, MF_01672, COG3757, COG3409	NA	NA
UHGV-0077958_60	UniRef90	UniRef90_R7BGF5	Phage tail protein	NA
UHGV-0077958_60	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0077958_61	Structural annotation	PF05657	NA	NA
UHGV-0077958_62	eggNOG-mapper	1232453.BAIF02000058_gene1631	NA	NA
UHGV-0077958_62	AcrCatalog	cluster_24841	NA	NA
UHGV-0077958_63	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0077958_63	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0077958_64	PHROG	phrog_1129	holin	lysis
UHGV-0077958_64	UniRef90	UniRef90_A0A412RR82	Enolase	NA
UHGV-0077958_64	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0077958_64	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0077958_64	Structural annotation	PF06946	NA	NA
UHGV-0077958_65	PHROG	phrog_4105	NA	unknown function
UHGV-0077958_65	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0077958_66	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0077958_67	UniRef90	UniRef90_A0A8D9UIY7	Rho termination factor	NA
UHGV-0077958_67	Structural annotation	PF21169	NA	NA
UHGV-0077958_68	PHROG	phrog_29	major head protein	head and packaging
UHGV-0077958_68	UniRef90	UniRef90_A0A412RQU1	Major capsid protein	NA
UHGV-0077958_68	eggNOG-mapper	1118054.CAGW01000102_gene4700	Phage major capsid protein E	NA
UHGV-0077958_68	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0077958_68	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0077958_69	PHROG	phrog_909	major head protein	head and packaging
UHGV-0077958_69	UniRef90	UniRef90_R7BGI8	Phage major capsid protein	NA
UHGV-0077958_70	UniRef90	UniRef90_UPI000E41BB01	NA	NA
UHGV-0077958_71	PHROG	phrog_2662	portal protein	head and packaging
UHGV-0077958_71	UniRef90	UniRef90_A0A412RR50	Phage_Mu_F domain-containing protein	NA
UHGV-0077958_71	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0077958_72	PHROG	phrog_64	portal protein	head and packaging
UHGV-0077958_72	UniRef90	UniRef90_A0A412RQZ0	Phage portal protein	NA
UHGV-0077958_72	eggNOG-mapper	1232453.BAIF02000058_gene1625	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0077958_72	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0077958_72	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0077958_73	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0077958_73	UniRef90	UniRef90_A0A6N7XL46	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0077958_73	eggNOG-mapper	1123288.SOV_6c01520	sigma factor activity	NA
UHGV-0077958_73	Pfam	PF07374	NA	DUF1492
UHGV-0077958_73	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0077958_73	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0077958_74	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0077958_74	UniRef90	UniRef90_A0A4Q5C857	Terminase_6C domain-containing protein	NA
UHGV-0077958_74	eggNOG-mapper	397290.C810_01390	chromosome segregation	NA
UHGV-0077958_74	COG	COG5410	NA	NA
UHGV-0077958_74	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0077958_80	Structural annotation	PF04466	NA	NA
UHGV-0077958_82	UniRef90	UniRef90_A0A8D9PGW1	HTH psq-type domain-containing protein	NA
UHGV-0077958_82	Structural annotation	PF05225, COG2886	NA	NA
UHGV-0077958_83	eggNOG-mapper	1397699.JNIS01000001_gene2447	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0077958_83	Structural annotation	PF07106, NF040642, COG3355	NA	NA
UHGV-0077958_85	PHROG	phrog_1689	nucleotide kinase	other
UHGV-0077958_85	UniRef90	UniRef90_A0A412RQV8	NA	NA
UHGV-0077958_85	eggNOG-mapper	1200557.JHWV01000001_gene285	NA	NA
UHGV-0077958_85	Pfam	PF11753	NA	DUF3310
UHGV-0077958_85	Structural annotation	PF11753	NA	NA
UHGV-0077958_86	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0077958_89	eggNOG-mapper	1235802.C823_04520	NA	NA
UHGV-0077958_97	PHROG	phrog_1233	NA	unknown function
UHGV-0077958_97	eggNOG-mapper	658655.HMPREF0988_00914	NA	NA
UHGV-0077958_98	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0077958_99	PHROG	phrog_20016	NA	unknown function
UHGV-0077958_99	UniRef90	UniRef90_A0A2Z4QB67	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-0077958_99	eggNOG-mapper	1235790.C805_00062	NA	NA
UHGV-0077958_99	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0077958_100	PHROG	phrog_16490	NA	unknown function
UHGV-0077958_100	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0077958_101	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0077958_102	PHROG	phrog_21718	NA	unknown function
UHGV-0077958_102	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0077958_102	Structural annotation	NF033819	NA	NA