UHGV-0078009

Genome information

vOTU vOTU-020200

Genome length 33,431 bps

CDS count 49

Completeness 86.15% (medium-quality)

geNomad score 0.9650

Prediction confidence Confident

Genome information
Genome ID	UHGV-0078009
vOTU ID	vOTU-020200
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_147916
BioSample	SAMEA2784497
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.15% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9650
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.93
Jumbo phage	No

Genome content
Genome length	33,431 bps
GC content	43.49%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	90.13%
Average CDS length	620.76 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0078009_1	KOfam	K14059	int; integrase	NA
UHGV-0078009_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0078009_1	UniRef90	UniRef90_A0A7U9STR7	Putative prophage phiRv2 integrase	NA
UHGV-0078009_1	eggNOG-mapper	1235799.C818_03513	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0078009_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0078009_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0078009_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0078009_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0078009_3	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0078009_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0078009_3	UniRef90	UniRef90_UPI0015933ACD	helix-turn-helix domain-containing protein	NA
UHGV-0078009_3	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0078009_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0078009_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0078009_3	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0078009_4	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0078009_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0078009_4	UniRef90	UniRef90_UPI0015933ACD	helix-turn-helix domain-containing protein	NA
UHGV-0078009_4	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0078009_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0078009_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0078009_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0078009_11	PHROG	phrog_585	NA	unknown function
UHGV-0078009_11	UniRef90	UniRef90_UPI0005E207FF	NA	NA
UHGV-0078009_11	eggNOG-mapper	1033744.CAEL01000029_gene1306	NA	NA
UHGV-0078009_11	Pfam	PF10711	NA	DUF2513
UHGV-0078009_11	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-0078009_12	PHROG	phrog_36464	NA	unknown function
UHGV-0078009_12	Structural annotation	PF09035	NA	NA
UHGV-0078009_17	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0078009_17	eggNOG-mapper	642492.Clole_0725	NA	NA
UHGV-0078009_17	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0078009_18	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0078009_19	UniRef90	UniRef90_UPI0003F6328F	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0078009_19	eggNOG-mapper	411459.RUMOBE_00951	NA	NA
UHGV-0078009_20	PHROG	phrog_8470	NA	unknown function
UHGV-0078009_20	UniRef90	UniRef90_UPI0018A0B53D	PcfJ domain-containing protein	NA
UHGV-0078009_20	eggNOG-mapper	1501230.ET33_02200	PcfJ-like protein	NA
UHGV-0078009_20	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0078009_20	Structural annotation	PF14284	NA	NA
UHGV-0078009_21	PHROG	phrog_7566	NA	unknown function
UHGV-0078009_21	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0078009_21	eggNOG-mapper	1007096.BAGW01000031_gene114	NA	NA
UHGV-0078009_22	PHROG	phrog_15077	NA	unknown function
UHGV-0078009_22	UniRef90	UniRef90_UPI001C0F37CA	NA	NA
UHGV-0078009_22	eggNOG-mapper	411902.CLOBOL_05696	NA	NA
UHGV-0078009_22	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0078009_24	eggNOG-mapper	1449050.JNLE01000005_gene3947	NA	NA
UHGV-0078009_25	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-0078009_25	PHROG	phrog_28876	metal-dependent phosphohydrolase	other
UHGV-0078009_25	UniRef90	UniRef90_A0A373LVX6	HD domain-containing protein	NA
UHGV-0078009_25	eggNOG-mapper	97139.C824_00737	PFAM HD domain	NA
UHGV-0078009_25	Pfam	PF01966	HD domain	HD
UHGV-0078009_25	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0078009_25	Structural annotation	PF07514, MF_01427, NF010007, COG3481	NA	NA
UHGV-0078009_26	eggNOG-mapper	768710.DesyoDRAFT_5168	DNA-templated transcription, initiation	NA
UHGV-0078009_26	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0078009_26	Structural annotation	PF06530, NF008895, COG1595	NA	NA
UHGV-0078009_27	eggNOG-mapper	411470.RUMGNA_00254	NA	NA
UHGV-0078009_28	PHROG	phrog_1863	NA	unknown function
UHGV-0078009_28	eggNOG-mapper	1232453.BAIF02000059_gene1610	NA	NA
UHGV-0078009_29	PHROG	phrog_14030	NA	unknown function
UHGV-0078009_29	UniRef90	UniRef90_A0A3R6PG27	SH3b domain-containing protein	NA
UHGV-0078009_29	eggNOG-mapper	1235800.C819_00464	NA	NA
UHGV-0078009_29	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0078009_29	Structural annotation	PF18342, NF041850, COG4991	NA	NA
UHGV-0078009_30	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0078009_30	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0078009_30	UniRef90	UniRef90_UPI0004826165	terminase small subunit	NA
UHGV-0078009_30	eggNOG-mapper	702450.CUW_0530	Terminase Small Subunit	NA
UHGV-0078009_30	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0078009_30	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0078009_30	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0078009_31	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0078009_31	UniRef90	UniRef90_R5W1L1	HNH domain-containing protein	NA
UHGV-0078009_31	eggNOG-mapper	457396.CSBG_01044	HNH endonuclease	NA
UHGV-0078009_31	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0078009_31	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0078009_31	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0078009_33	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0078009_33	UniRef90	UniRef90_R7FEF5	Terminase	NA
UHGV-0078009_33	eggNOG-mapper	1211817.CCAT010000007_gene1040	Terminase	NA
UHGV-0078009_33	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0078009_33	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0078009_33	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0078009_33	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0078009_34	PHROG	phrog_12	portal protein	head and packaging
UHGV-0078009_34	UniRef90	UniRef90_UPI00156EE181	phage portal protein	NA
UHGV-0078009_34	eggNOG-mapper	1157490.EL26_20720	Phage portal protein	NA
UHGV-0078009_34	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0078009_34	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0078009_34	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0078009_35	KOfam	K06904	NA	NA
UHGV-0078009_35	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0078009_35	UniRef90	UniRef90_R6YQV2	Putative phage prohead protease	NA
UHGV-0078009_35	eggNOG-mapper	927704.SELR_18200	Caudovirus prohead serine protease	NA
UHGV-0078009_35	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0078009_35	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0078009_35	COG	COG3740	Phage head maturation protease	NA
UHGV-0078009_35	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0078009_36	PHROG	phrog_10	major head protein	head and packaging
UHGV-0078009_36	UniRef90	UniRef90_A0A417W9T2	Phage major capsid protein	NA
UHGV-0078009_36	eggNOG-mapper	411470.RUMGNA_02065	NA	NA
UHGV-0078009_36	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0078009_36	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0078009_36	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0078009_36	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0078009_37	UniRef90	UniRef90_UPI001E432EFF	phage head-tail connector protein	NA
UHGV-0078009_37	eggNOG-mapper	768704.Desmer_4461	NA	NA
UHGV-0078009_37	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0078009_37	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0078009_38	UniRef90	UniRef90_R6Z5T8	Putative phage head-tail adaptor	NA
UHGV-0078009_38	eggNOG-mapper	1536774.H70357_10645	NA	NA
UHGV-0078009_38	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0078009_38	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0078009_39	Structural annotation	TIGR01725	NA	NA
UHGV-0078009_40	Structural annotation	PF05657	NA	NA
UHGV-0078009_41	PHROG	phrog_88	major tail protein	tail
UHGV-0078009_41	UniRef90	UniRef90_A0A843GGC8	S-l_SbsC_C domain-containing protein	NA
UHGV-0078009_41	eggNOG-mapper	935837.JAEK01000027_gene1636	Pkd domain containing protein	NA
UHGV-0078009_41	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0078009_41	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0078009_41	COG	COG3291	NA	NA
UHGV-0078009_41	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0078009_43	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0078009_43	PHROG	phrog_5218	NA	unknown function
UHGV-0078009_43	UniRef90	UniRef90_A0A1Y4GYF9	PhageMin_Tail domain-containing protein	NA
UHGV-0078009_43	eggNOG-mapper	742723.HMPREF9477_00897	phage tail tape measure protein	NA
UHGV-0078009_43	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0078009_43	COG	COG4487	NA	NA
UHGV-0078009_43	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0078009_44	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0078009_44	UniRef90	UniRef90_UPI0004805F22	phage tail family protein	NA
UHGV-0078009_44	eggNOG-mapper	665950.HMPREF1025_02008	Phage tail protein	NA
UHGV-0078009_44	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0078009_44	COG	COG4722	Phage-related protein YomH	NA
UHGV-0078009_44	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0078009_45	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0078009_45	PHROG	phrog_538	minor tail protein	tail
UHGV-0078009_45	eggNOG-mapper	411460.RUMTOR_01333	NA	NA
UHGV-0078009_45	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0078009_45	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0078009_46	PHROG	phrog_1220	head protein	head and packaging
UHGV-0078009_46	eggNOG-mapper	1034347.CAHJ01000045_gene551	NA	NA
UHGV-0078009_47	UniRef90	UniRef90_A0A174ZRL6	YcfA-like protein	NA
UHGV-0078009_47	eggNOG-mapper	742765.HMPREF9457_03734	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0078009_47	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0078009_47	Structural annotation	COG1724	NA	NA
UHGV-0078009_48	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0078009_48	PHROG	phrog_11958	NA	unknown function
UHGV-0078009_48	UniRef90	UniRef90_R6K069	HicB-like domain-containing protein	NA
UHGV-0078009_48	eggNOG-mapper	796945.HMPREF1145_1169	Toxin-antitoxin system, antitoxin component, HicB family	NA
UHGV-0078009_48	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0078009_48	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0078009_49	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0078009_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0078009_49	UniRef90	UniRef90_R5VSJ9	HTH cro/C1-type domain-containing protein	NA
UHGV-0078009_49	eggNOG-mapper	1304875.JAFZ01000002_gene326	Helix-turn-helix XRE-family like proteins	NA
UHGV-0078009_49	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0078009_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0078009_49	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0078009_49	Structural annotation	PF13560, NF041951, COG1396	NA	NA