UHGV-0078074

Genome information

Genome length 23,683 bps

CDS count 42

Completeness 59.31% (medium-quality)

geNomad score 0.9752

Prediction confidence Confident

Genome information
Genome ID	UHGV-0078074
vOTU ID	vOTU-035491
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_143806
BioSample	SAMEA2737838
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.31% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9752
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.57
Jumbo phage	No

Genome content
Genome length	23,683 bps
GC content	41.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	92.75%
Average CDS length	532.07 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0078074_1	eggNOG-mapper	1410650.JHWL01000003_gene2827	NA	NA
UHGV-0078074_1	Structural annotation	PF12195	NA	NA
UHGV-0078074_2	PHROG	phrog_12105	NA	unknown function
UHGV-0078074_2	eggNOG-mapper	1226322.HMPREF1545_03850	NA	NA
UHGV-0078074_3	PHROG	phrog_15239	NA	unknown function
UHGV-0078074_4	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0078074_4	UniRef90	UniRef90_A0A3R6PQZ4	N4-gp56 family major capsid protein	NA
UHGV-0078074_4	eggNOG-mapper	657322.FPR_02330	NA	NA
UHGV-0078074_4	Pfam	PF13252	NA	DUF4043
UHGV-0078074_4	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0078074_4	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0078074_5	PHROG	phrog_13908	NA	unknown function
UHGV-0078074_5	eggNOG-mapper	1321782.HMPREF1986_00346	NA	NA
UHGV-0078074_6	KOfam	K07584	NA	NA
UHGV-0078074_6	PHROG	phrog_4478	peptidase	other
UHGV-0078074_6	UniRef90	UniRef90_A0A416Z2U9	Ribosomal-processing cysteine protease Prp	NA
UHGV-0078074_6	eggNOG-mapper	1121914.AUDW01000025_gene171	Cysteine protease Prp	NA
UHGV-0078074_6	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0078074_6	COG	COG2868	NA	NA
UHGV-0078074_7	PHROG	phrog_156	portal protein	head and packaging
UHGV-0078074_7	eggNOG-mapper	748224.HMPREF9436_02547	NA	NA
UHGV-0078074_7	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0078074_8	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0078074_8	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0078074_8	UniRef90	UniRef90_A0A2V2D4K5	Terminase-like family protein	NA
UHGV-0078074_8	eggNOG-mapper	411483.FAEPRAA2165_01044	Terminase-like family	NA
UHGV-0078074_8	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0078074_8	COG	COG1783	Phage terminase large subunit	NA
UHGV-0078074_8	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0078074_9	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0078074_9	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0078074_9	UniRef90	UniRef90_A0A3A9GB54	Phage portal protein	NA
UHGV-0078074_9	eggNOG-mapper	1415774.U728_838	terminase, small subunit	NA
UHGV-0078074_9	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0078074_9	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0078074_9	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0078074_9	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0078074_13	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-0078074_13	PHROG	phrog_28876	metal-dependent phosphohydrolase	other
UHGV-0078074_13	UniRef90	UniRef90_A0A843HIF4	HDIG domain-containing protein	NA
UHGV-0078074_13	eggNOG-mapper	1235800.C819_00499	metal-dependent phosphohydrolase, HD sub domain	NA
UHGV-0078074_13	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0078074_13	Structural annotation	PF01966, MF_01427, NF010007, COG3481	NA	NA
UHGV-0078074_14	UniRef90	UniRef90_UPI001D072F7E	NA	NA
UHGV-0078074_14	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-0078074_15	Structural annotation	PF09889, COG4068	NA	NA
UHGV-0078074_17	PHROG	phrog_15077	NA	unknown function
UHGV-0078074_17	UniRef90	UniRef90_A0A3A6HZA9	NA	NA
UHGV-0078074_17	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-0078074_17	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0078074_18	PHROG	phrog_8470	NA	unknown function
UHGV-0078074_18	UniRef90	UniRef90_UPI000E4BB21C	PcfJ domain-containing protein	NA
UHGV-0078074_18	eggNOG-mapper	742733.HMPREF9469_00219	PcfJ-like protein	NA
UHGV-0078074_18	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0078074_18	Structural annotation	PF14284	NA	NA
UHGV-0078074_19	PHROG	phrog_4433	NA	unknown function
UHGV-0078074_19	eggNOG-mapper	742733.HMPREF9469_00220	regulation of DNA-templated transcription, elongation	NA
UHGV-0078074_19	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0078074_19	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0078074_20	eggNOG-mapper	483218.BACPEC_01167	NA	NA
UHGV-0078074_22	eggNOG-mapper	1235792.C808_00630	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0078074_22	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0078074_24	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0078074_24	UniRef90	UniRef90_A0A416Z2U8	NA	NA
UHGV-0078074_24	eggNOG-mapper	1204534.J9QD24_9CAUD	NA	NA
UHGV-0078074_24	Pfam	PF12961	NA	DUF3850
UHGV-0078074_24	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-0078074_25	PHROG	phrog_20593	NA	unknown function
UHGV-0078074_26	eggNOG-mapper	658655.HMPREF0988_00866	NA	NA
UHGV-0078074_28	PHROG	phrog_24368	NA	unknown function
UHGV-0078074_29	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0078074_29	UniRef90	UniRef90_UPI00164A90AD	HNH endonuclease	NA
UHGV-0078074_29	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0078074_30	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0078074_30	UniRef90	UniRef90_A0A416Z2U3	RNase H type-1 domain-containing protein	NA
UHGV-0078074_30	eggNOG-mapper	1163389.OOM_1312	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0078074_30	Pfam	PF00075	RNase H	RNase_H
UHGV-0078074_30	COG	COG0328	Ribonuclease HI	NA
UHGV-0078074_30	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0078074_31	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0078074_31	eggNOG-mapper	1235800.C819_02258	NA	NA
UHGV-0078074_31	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0078074_35	PHROG	phrog_6058	NA	unknown function
UHGV-0078074_35	UniRef90	UniRef90_A0A416Z3U8	Helix-turn-helix domain-containing protein	NA
UHGV-0078074_35	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0078074_36	Structural annotation	PF09035	NA	NA
UHGV-0078074_38	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0078074_38	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0078074_38	UniRef90	UniRef90_A0A3R6UL37	XRE family transcriptional regulator	NA
UHGV-0078074_38	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0078074_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0078074_38	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0078074_38	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0078074_40	UniRef90	UniRef90_A0A3R6QMJ7	XRE family transcriptional regulator	NA
UHGV-0078074_40	eggNOG-mapper	332101.JIBU02000008_gene624	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0078074_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0078074_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0078074_40	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0078074_41	eggNOG-mapper	1163671.JAGI01000002_gene1685	Flagellar rod assembly protein muramidase FlgJ	NA
UHGV-0078074_41	NCBIFam	NF033223.2	YHYH domain-containing protein	NA
UHGV-0078074_41	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0078074_42	KOfam	K14059	int; integrase	NA
UHGV-0078074_42	PHROG	phrog_1	integrase	integration and excision
UHGV-0078074_42	UniRef90	UniRef90_A0A318EPS8	Site-specific recombinase XerD	NA
UHGV-0078074_42	eggNOG-mapper	1235799.C818_03513	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0078074_42	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0078074_42	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0078074_42	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0078074_42	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA