UHGV-0078130

Genome information

Genome length 25,406 bps

CDS count 34

Completeness 60.87% (medium-quality)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-0078130
vOTU ID	vOTU-025119
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_162861
BioSample	NA
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.87% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.15
Jumbo phage	No

Genome content
Genome length	25,406 bps
GC content	41.49%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	95.76%
Average CDS length	718.06 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0078130_3	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0078130_3	UniRef90	UniRef90_UPI000931D7F9	RNA polymerase subunit sigma-70	NA
UHGV-0078130_3	eggNOG-mapper	411459.RUMOBE_00943	NA	NA
UHGV-0078130_3	Structural annotation	PF02996	NA	NA
UHGV-0078130_5	UniRef90	UniRef90_UPI001D06B9AB	toll/interleukin-1 receptor domain-containing protein	NA
UHGV-0078130_5	eggNOG-mapper	1408473.JHXO01000001_gene1973	TIR domain	NA
UHGV-0078130_5	PADLOC	Rst_TIR	NA	NA
UHGV-0078130_5	Pfam	PF13676	TIR domain	TIR_2
UHGV-0078130_5	COG	COG4916	NA	NA
UHGV-0078130_5	Structural annotation	PF13676, PF06483, NF040588, COG4916	NA	NA
UHGV-0078130_7	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0078130_7	UniRef90	UniRef90_UPI00189EABEF	phage terminase small subunit	NA
UHGV-0078130_7	eggNOG-mapper	33035.JPJF01000107_gene435	NA	NA
UHGV-0078130_7	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0078130_7	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0078130_7	COG	COG5484	NA	NA
UHGV-0078130_7	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-0078130_8	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0078130_8	PHROG	phrog_10250	NA	unknown function
UHGV-0078130_8	UniRef90	UniRef90_A0A173WM22	Phage terminase, large subunit, PBSX family	NA
UHGV-0078130_8	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0078130_8	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0078130_8	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0078130_8	COG	COG1783	Phage terminase large subunit	NA
UHGV-0078130_8	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0078130_9	PHROG	phrog_64	portal protein	head and packaging
UHGV-0078130_9	UniRef90	UniRef90_UPI00189E99CC	phage portal protein	NA
UHGV-0078130_9	eggNOG-mapper	742733.HMPREF9469_01826	Phage portal protein, SPP1 family	NA
UHGV-0078130_9	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0078130_9	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0078130_9	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0078130_10	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0078130_10	UniRef90	UniRef90_A0A1C5LC20	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-0078130_10	eggNOG-mapper	742733.HMPREF9469_01825	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0078130_10	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0078130_10	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0078130_10	COG	COG2369	NA	NA
UHGV-0078130_10	Structural annotation	PF15542, PF04233, TIGR01641, COG2369	NA	NA
UHGV-0078130_12	PHROG	phrog_1048	NA	unknown function
UHGV-0078130_12	UniRef90	UniRef90_A0A373P4J3	NA	NA
UHGV-0078130_12	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0078130_12	Pfam	PF11195	NA	DUF2829
UHGV-0078130_12	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0078130_12	Structural annotation	PF11195	NA	NA
UHGV-0078130_13	PHROG	phrog_918	NA	unknown function
UHGV-0078130_13	UniRef90	UniRef90_UPI000E468F85	NA	NA
UHGV-0078130_13	eggNOG-mapper	1140001.I571_01827	NA	NA
UHGV-0078130_13	Pfam	PF19791	NA	DUF6275
UHGV-0078130_13	Structural annotation	PF19791	NA	NA
UHGV-0078130_14	Structural annotation	PF01281	NA	NA
UHGV-0078130_15	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0078130_15	UniRef90	UniRef90_A0A415FLT0	NA	NA
UHGV-0078130_15	eggNOG-mapper	742733.HMPREF9469_01824	NA	NA
UHGV-0078130_15	Pfam	PF14265	NA	DUF4355
UHGV-0078130_15	Structural annotation	PF14265	NA	NA
UHGV-0078130_16	PHROG	phrog_422	major head protein	head and packaging
UHGV-0078130_16	UniRef90	UniRef90_A0A2H4JCM6	Putative capsid protein	NA
UHGV-0078130_16	eggNOG-mapper	742733.HMPREF9469_01823	NA	NA
UHGV-0078130_16	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0078130_17	PHROG	phrog_2724	NA	unknown function
UHGV-0078130_17	UniRef90	UniRef90_A0A1C5LBF0	Rho termination factor, N-terminal domain	NA
UHGV-0078130_17	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0078130_17	COG	COG0292	Ribosomal protein L20	NA
UHGV-0078130_17	Structural annotation	PF07498	NA	NA
UHGV-0078130_18	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0078130_18	UniRef90	UniRef90_A0A1C5LAU6	Phage gp6-like head-tail connector protein	NA
UHGV-0078130_18	eggNOG-mapper	742733.HMPREF9469_01821	Phage gp6-like head-tail connector protein	NA
UHGV-0078130_18	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0078130_18	Structural annotation	PF05135	NA	NA
UHGV-0078130_19	PHROG	phrog_2168	NA	unknown function
UHGV-0078130_19	eggNOG-mapper	1280689.AUJC01000003_gene969	NA	NA
UHGV-0078130_19	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0078130_20	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0078130_20	UniRef90	UniRef90_A0A1C5LAB9	Phage protein, HK97 gp10 family	NA
UHGV-0078130_20	eggNOG-mapper	742733.HMPREF9469_01819	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0078130_20	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0078130_20	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0078130_20	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0078130_21	PHROG	phrog_78	tail terminator	connector
UHGV-0078130_21	eggNOG-mapper	742733.HMPREF9469_01818	NA	NA
UHGV-0078130_21	Structural annotation	PF05657	NA	NA
UHGV-0078130_22	PHROG	phrog_158	major tail protein	tail
UHGV-0078130_22	UniRef90	UniRef90_A0A1M7JWZ7	Phage tail tube protein, TTP	NA
UHGV-0078130_22	eggNOG-mapper	742733.HMPREF9469_01817	Phage tail tube protein, TTP	NA
UHGV-0078130_22	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0078130_23	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0078130_23	UniRef90	UniRef90_UPI001D069341	NA	NA
UHGV-0078130_23	eggNOG-mapper	742733.HMPREF9469_01816	NA	NA
UHGV-0078130_23	Structural annotation	PF19591	NA	NA
UHGV-0078130_24	PHROG	phrog_2066	NA	unknown function
UHGV-0078130_24	eggNOG-mapper	1123304.AQYA01000037_gene232	NA	NA
UHGV-0078130_25	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0078130_25	UniRef90	UniRef90_A0A1C5L9Y5	Phage-related protein	NA
UHGV-0078130_25	eggNOG-mapper	1304866.K413DRAFT_3046	NA	NA
UHGV-0078130_25	COG	COG5283	Phage-related tail protein	NA
UHGV-0078130_26	PHROG	phrog_1194	NA	unknown function
UHGV-0078130_26	eggNOG-mapper	1121866.AUGK01000003_gene1438	NA	NA
UHGV-0078130_26	Pfam	PF20458	NA	DUF6711
UHGV-0078130_26	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0078130_27	PHROG	phrog_6616	tail protein	tail
UHGV-0078130_27	UniRef90	UniRef90_A0A414EG21	Tail fiber domain-containing protein	NA
UHGV-0078130_27	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-0078130_27	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0078130_28	PHROG	phrog_18444	NA	unknown function
UHGV-0078130_28	eggNOG-mapper	411459.RUMOBE_00912	NA	NA
UHGV-0078130_29	eggNOG-mapper	1121866.AUGK01000003_gene1445	NA	NA
UHGV-0078130_30	PHROG	phrog_16164	NA	unknown function
UHGV-0078130_30	eggNOG-mapper	457412.RSAG_01113	NA	NA
UHGV-0078130_30	Structural annotation	PF10651, NF032891	NA	NA
UHGV-0078130_31	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-0078130_31	PHROG	phrog_11541	NA	unknown function
UHGV-0078130_31	UniRef90	UniRef90_A0A1C5L8V0	GDSL-like Lipase/Acylhydrolase	NA
UHGV-0078130_31	eggNOG-mapper	880070.Cycma_0058	GDSL-like Lipase/Acylhydrolase family	NA
UHGV-0078130_31	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0078130_31	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0078130_32	PHROG	phrog_4105	NA	unknown function
UHGV-0078130_32	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0078130_33	PHROG	phrog_18218	NA	unknown function
UHGV-0078130_33	UniRef90	UniRef90_UPI001C0EBFB3	ribonuclease	NA
UHGV-0078130_33	eggNOG-mapper	411459.RUMOBE_00910	NA	NA
UHGV-0078130_33	Structural annotation	PF06946	NA	NA
UHGV-0078130_34	KOfam	K07273	acm; lysozyme	NA
UHGV-0078130_34	PHROG	phrog_291	endolysin	lysis
UHGV-0078130_34	UniRef90	UniRef90_E6JZS3	Glycosyl hydrolase family 25	NA
UHGV-0078130_34	eggNOG-mapper	457412.RSAG_00790	CHAP domain	NA
UHGV-0078130_34	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0078130_34	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0078130_34	Structural annotation	PF01183, TIGR02494, COG3757	NA	NA