UHGV-0078273

Genome information

Genome length 33,106 bps

CDS count 55

Completeness 94.08% (high-quality)

geNomad score 0.9777

Prediction confidence Confident

Genome information
Genome ID	UHGV-0078273
vOTU ID	vOTU-062462
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_166258
BioSample	NA
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.08% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9777
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	43.39
Jumbo phage	No

Genome content
Genome length	33,106 bps
GC content	43.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	91.53%
Average CDS length	553.96 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0078273_1	KOfam	K14059	int; integrase	NA
UHGV-0078273_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0078273_1	UniRef90	UniRef90_R6MT37	Integrase family protein	NA
UHGV-0078273_1	eggNOG-mapper	411473.RUMCAL_01506	Belongs to the 'phage' integrase family	NA
UHGV-0078273_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0078273_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0078273_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0078273_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0078273_2	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0078273_2	PHROG	phrog_16726	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0078273_2	UniRef90	UniRef90_A0A415UM57	HNH endonuclease	NA
UHGV-0078273_2	eggNOG-mapper	386415.NT01CX_1757	HNH endonuclease	NA
UHGV-0078273_2	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0078273_2	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0078273_2	Structural annotation	PF01844, NF040563, COG1403	NA	NA
UHGV-0078273_3	PHROG	phrog_87	metallo-protease	other
UHGV-0078273_3	UniRef90	UniRef90_A0A416P6H2	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0078273_3	eggNOG-mapper	1347392.CCEZ01000005_gene1204	Zn peptidase	NA
UHGV-0078273_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0078273_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0078273_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0078273_4	UniRef90	UniRef90_A0A416P5B3	XRE family transcriptional regulator	NA
UHGV-0078273_4	eggNOG-mapper	1347392.CCEZ01000005_gene1205	Helix-turn-helix XRE-family like proteins	NA
UHGV-0078273_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0078273_4	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0078273_5	UniRef90	UniRef90_A0A416P573	XRE family transcriptional regulator	NA
UHGV-0078273_5	eggNOG-mapper	1235792.C808_05261	NA	NA
UHGV-0078273_5	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0078273_8	PHROG	phrog_6058	NA	unknown function
UHGV-0078273_8	eggNOG-mapper	411460.RUMTOR_02008	NA	NA
UHGV-0078273_10	PHROG	phrog_4292	NA	unknown function
UHGV-0078273_12	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0078273_12	eggNOG-mapper	1232452.BAIB02000007_gene1647	NA	NA
UHGV-0078273_12	Structural annotation	PF21578	NA	NA
UHGV-0078273_13	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0078273_13	UniRef90	UniRef90_R6G3H9	Ribonuclease HI	NA
UHGV-0078273_13	eggNOG-mapper	1144342.PMI40_00770	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0078273_13	Pfam	PF00075	RNase H	RNase_H
UHGV-0078273_13	COG	COG0328	Ribonuclease HI	NA
UHGV-0078273_13	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0078273_14	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-0078273_15	PHROG	phrog_8470	NA	unknown function
UHGV-0078273_15	UniRef90	UniRef90_UPI00164C094F	PcfJ domain-containing protein	NA
UHGV-0078273_15	eggNOG-mapper	1235792.C808_00066	PcfJ-like protein	NA
UHGV-0078273_15	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0078273_15	Structural annotation	PF14284	NA	NA
UHGV-0078273_17	PHROG	phrog_15077	NA	unknown function
UHGV-0078273_17	UniRef90	UniRef90_UPI001D0741A0	NA	NA
UHGV-0078273_17	eggNOG-mapper	97139.C824_05986	NA	NA
UHGV-0078273_17	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0078273_18	eggNOG-mapper	1235798.C817_01884	NA	NA
UHGV-0078273_21	PHROG	phrog_98	NA	unknown function
UHGV-0078273_21	UniRef90	UniRef90_S2Z040	YopX domain-containing protein	NA
UHGV-0078273_21	eggNOG-mapper	457412.RSAG_01162	YopX protein	NA
UHGV-0078273_21	Pfam	PF09643	YopX protein	YopX
UHGV-0078273_21	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0078273_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0078273_23	UniRef90	UniRef90_A0A416N3D8	NA	NA
UHGV-0078273_23	eggNOG-mapper	1235792.C808_03069	sigma factor activity	NA
UHGV-0078273_23	Pfam	PF07374	NA	DUF1492
UHGV-0078273_23	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0078273_23	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0078273_25	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0078273_25	UniRef90	UniRef90_UPI00156E0A7C	HNH endonuclease	NA
UHGV-0078273_25	eggNOG-mapper	748224.HMPREF9436_01465	NA	NA
UHGV-0078273_26	UniRef90	UniRef90_R6GFM0	Conserved domain protein	NA
UHGV-0078273_26	Structural annotation	PF19962	NA	NA
UHGV-0078273_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0078273_27	UniRef90	UniRef90_UPI001D0087E2	terminase large subunit	NA
UHGV-0078273_27	eggNOG-mapper	1123263.AUKY01000112_gene2060	phage terminase, large subunit	NA
UHGV-0078273_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0078273_27	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0078273_28	PHROG	phrog_104	portal protein	head and packaging
UHGV-0078273_28	UniRef90	UniRef90_A0A174L3Q9	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0078273_28	eggNOG-mapper	1123263.AUKY01000112_gene2059	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0078273_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0078273_28	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0078273_29	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0078273_29	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-0078273_29	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-0078273_29	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-0078273_29	Structural annotation	PF20344	NA	NA
UHGV-0078273_31	PHROG	phrog_233	head scaffolding protein	head and packaging
UHGV-0078273_31	UniRef90	UniRef90_UPI001C03A2F1	NA	NA
UHGV-0078273_31	eggNOG-mapper	1123263.AUKY01000068_gene501	NA	NA
UHGV-0078273_31	Structural annotation	PF14265	NA	NA
UHGV-0078273_32	PHROG	phrog_10	major head protein	head and packaging
UHGV-0078273_32	UniRef90	UniRef90_R6G6T1	Gp7	NA
UHGV-0078273_32	eggNOG-mapper	205876.Q855V6_9CAUD	peptidase activity	NA
UHGV-0078273_32	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0078273_32	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0078273_32	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0078273_34	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0078273_34	UniRef90	UniRef90_R6G3G4	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0078273_34	Pfam	PF09355	NA	Phage_Gp19
UHGV-0078273_34	Structural annotation	PF09355	NA	NA
UHGV-0078273_35	PHROG	phrog_501	head closure Hc1	connector
UHGV-0078273_35	UniRef90	UniRef90_Q7Y4I1	Gp43	NA
UHGV-0078273_35	eggNOG-mapper	1280698.AUJS01000007_gene1041	NA	NA
UHGV-0078273_35	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0078273_36	PHROG	phrog_387	neck protein	connector
UHGV-0078273_36	eggNOG-mapper	908337.HMPREF9257_0534	NA	NA
UHGV-0078273_37	PHROG	phrog_123	tail terminator	connector
UHGV-0078273_37	eggNOG-mapper	1280698.AUJS01000007_gene1043	NA	NA
UHGV-0078273_37	Structural annotation	PF06141	NA	NA
UHGV-0078273_38	PHROG	phrog_117	major tail protein	tail
UHGV-0078273_38	UniRef90	UniRef90_UPI001F18A06D	phage tail protein	NA
UHGV-0078273_38	eggNOG-mapper	1280698.AUJS01000007_gene1044	domain, Protein	NA
UHGV-0078273_38	COG	COG5492	NA	NA
UHGV-0078273_38	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0078273_39	PHROG	phrog_1526	NA	unknown function
UHGV-0078273_39	UniRef90	UniRef90_A0A1Q8EF45	NA	NA
UHGV-0078273_39	eggNOG-mapper	665950.HMPREF1025_02524	NA	NA
UHGV-0078273_40	PHROG	phrog_1633	NA	unknown function
UHGV-0078273_40	UniRef90	UniRef90_UPI0006C2F0F2	NA	NA
UHGV-0078273_40	eggNOG-mapper	1280698.AUJS01000007_gene1046	NA	NA
UHGV-0078273_40	Pfam	PF17318	NA	DUF5361
UHGV-0078273_40	Structural annotation	PF17318	NA	NA
UHGV-0078273_41	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0078273_41	UniRef90	UniRef90_A0A174L0T5	Phage-related protein	NA
UHGV-0078273_41	eggNOG-mapper	1280698.AUJS01000007_gene1047	nuclear chromosome segregation	NA
UHGV-0078273_41	COG	COG1511	NA	NA
UHGV-0078273_41	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-0078273_42	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0078273_42	UniRef90	UniRef90_UPI001F242491	phage tail family protein	NA
UHGV-0078273_42	eggNOG-mapper	1280698.AUJS01000007_gene1048	NA	NA
UHGV-0078273_42	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0078273_43	PHROG	phrog_538	minor tail protein	tail
UHGV-0078273_43	UniRef90	UniRef90_UPI001F3E20C1	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0078273_43	eggNOG-mapper	1280698.AUJS01000007_gene1049	NA	NA
UHGV-0078273_43	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0078273_43	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0078273_44	PHROG	phrog_25635	NA	unknown function
UHGV-0078273_44	UniRef90	UniRef90_A0A6L8RVX5	H_lectin domain-containing protein	NA
UHGV-0078273_44	eggNOG-mapper	1280698.AUJS01000007_gene1050	NA	NA
UHGV-0078273_45	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0078273_45	PHROG	phrog_1	integrase	integration and excision
UHGV-0078273_45	UniRef90	UniRef90_UPI001D0E16DF	tyrosine-type recombinase/integrase	NA
UHGV-0078273_45	eggNOG-mapper	33035.JPJF01000058_gene3673	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0078273_45	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0078273_45	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0078273_45	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0078273_45	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0078273_47	PHROG	phrog_12931	NA	unknown function
UHGV-0078273_47	eggNOG-mapper	411461.DORFOR_00728	NA	NA
UHGV-0078273_48	PHROG	phrog_1382	NA	unknown function
UHGV-0078273_48	eggNOG-mapper	411461.DORFOR_00727	NA	NA
UHGV-0078273_49	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0078273_49	PHROG	phrog_11157	NA	unknown function
UHGV-0078273_49	UniRef90	UniRef90_A0A174IRE2	Bacillopeptidase F	NA
UHGV-0078273_49	eggNOG-mapper	411461.DORFOR_01182	NA	NA
UHGV-0078273_49	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0078273_49	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0078273_49	NCBIFam	NF033510.3	Ca2+-stabilized repeat-containing adhesin	NA
UHGV-0078273_49	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0078273_49	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0078273_50	PHROG	phrog_32322	NA	unknown function
UHGV-0078273_50	UniRef90	UniRef90_A0A173TSR5	Ig-like_bact domain-containing protein	NA
UHGV-0078273_50	eggNOG-mapper	411461.DORFOR_01183	NA	NA
UHGV-0078273_50	Pfam	PF13754	NA	Big_3_4
UHGV-0078273_50	Structural annotation	PF13754	NA	NA
UHGV-0078273_51	eggNOG-mapper	1280698.AUJS01000007_gene1056	NA	NA
UHGV-0078273_51	Structural annotation	PF07703, NF038114, COG5501	NA	NA
UHGV-0078273_52	eggNOG-mapper	411461.DORFOR_00723	NA	NA
UHGV-0078273_53	PHROG	phrog_1863	NA	unknown function
UHGV-0078273_53	UniRef90	UniRef90_A0A2K9NYV1	Holin	NA
UHGV-0078273_53	eggNOG-mapper	556261.HMPREF0240_01265	NA	NA
UHGV-0078273_54	PHROG	phrog_15303	NA	unknown function
UHGV-0078273_54	eggNOG-mapper	394503.Ccel_3271	NA	NA
UHGV-0078273_55	PHROG	phrog_14030	NA	unknown function
UHGV-0078273_55	UniRef90	UniRef90_A0A174JX56	Spore cortex-lytic enzyme	NA
UHGV-0078273_55	eggNOG-mapper	742741.HMPREF9475_00446	NA	NA
UHGV-0078273_55	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0078273_55	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0078273_55	Structural annotation	PF18013, PF01471, COG3409	NA	NA