UHGV-0078300

Genome information

Genome length 18,339 bps

CDS count 18

Completeness 80.39% (medium-quality)

geNomad score 0.9735

Prediction confidence Confident

Genome information
Genome ID	UHGV-0078300
vOTU ID	vOTU-036559
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_147851
BioSample	SAMEA2784497
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.39% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9735
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.21
Jumbo phage	No

Genome content
Genome length	18,339 bps
GC content	46.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	18
CDS density	87.27%
Average CDS length	891.17 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0078300_1	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0078300_2	Pfam	PF07523	Bacterial Ig-like domain (group 3)	Big_3
UHGV-0078300_2	COG	COG5492	NA	NA
UHGV-0078300_3	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0078300_3	UniRef90	UniRef90_A0A8D6XVH1	Lower collar protein (Virfam: adaptor Ad4)	NA
UHGV-0078300_3	eggNOG-mapper	10756.TUB11_BPPH2	NA	NA
UHGV-0078300_4	PHROG	phrog_2038	upper collar connector	connector
UHGV-0078300_4	UniRef90	UniRef90_A0A345MZG5	Upper collar protein	NA
UHGV-0078300_4	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0078300_4	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0078300_4	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0078300_5	PHROG	phrog_2248	tail protein	tail
UHGV-0078300_5	UniRef90	UniRef90_A0A843GXV1	Caud_tail_N domain-containing protein	NA
UHGV-0078300_5	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-0078300_5	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0078300_5	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0078300_5	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0078300_6	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0078300_6	UniRef90	UniRef90_A0A843HGC7	Ig-like domain-containing protein	NA
UHGV-0078300_6	eggNOG-mapper	10753.B7SSM8_BPNF	viral capsid	NA
UHGV-0078300_6	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0078300_9	PHROG	phrog_2150	terminase	head and packaging
UHGV-0078300_9	UniRef90	UniRef90_A0A843GUV2	Phage DNA encapsidation protein	NA
UHGV-0078300_9	eggNOG-mapper	338473.A6XAE1_9CAUD	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0078300_9	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0078300_9	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0078300_10	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0078300_10	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0078300_10	UniRef90	UniRef90_A0A843HX23	DNA-directed DNA polymerase	NA
UHGV-0078300_10	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0078300_10	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0078300_10	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0078300_11	Structural annotation	PF19881, MF_00950, TIGR00405, COG3445	NA	NA
UHGV-0078300_12	Structural annotation	PF19881, MF_00950, TIGR00405, COG3445	NA	NA
UHGV-0078300_14	Structural annotation	PF17427	NA	NA
UHGV-0078300_17	Structural annotation	PF17548	NA	NA