UHGV-0078339

Genome information

Genome length 25,172 bps

CDS count 36

Completeness 57.91% (medium-quality)

geNomad score 0.9782

Prediction confidence Confident

Genome information
Genome ID	UHGV-0078339
vOTU ID	vOTU-029295
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_145391
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.91% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9782
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.19
Jumbo phage	No

Genome content
Genome length	25,172 bps
GC content	46.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	92.45%
Average CDS length	653.33 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0078339_2	UniRef90	UniRef90_D7GXB5	NA	NA
UHGV-0078339_2	Pfam	PF12939	NA	DUF3837
UHGV-0078339_5	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0078339_5	PHROG	phrog_2649	endolysin	lysis
UHGV-0078339_5	UniRef90	UniRef90_A0A1C5W0J0	Peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK	NA
UHGV-0078339_5	eggNOG-mapper	411902.CLOBOL_06235	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0078339_5	AcrCatalog	cluster_9940	NA	NA
UHGV-0078339_5	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0078339_5	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0078339_5	Structural annotation	PF02557, PF19127, MF_01924, NF007557, TIGR04035, COG2173	NA	NA
UHGV-0078339_6	PHROG	phrog_1129	holin	lysis
UHGV-0078339_6	UniRef90	UniRef90_A0A4R2LIX9	Holin family Hol44 protein (Superfamily V)	NA
UHGV-0078339_6	eggNOG-mapper	411902.CLOBOL_03236	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0078339_6	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0078339_6	Structural annotation	PF16079	NA	NA
UHGV-0078339_7	PHROG	phrog_1863	NA	unknown function
UHGV-0078339_7	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0078339_7	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0078339_7	Pfam	PF10779	Haemolysin XhlA	XhlA
UHGV-0078339_8	PHROG	phrog_20274	NA	unknown function
UHGV-0078339_8	UniRef90	UniRef90_D7GNX6	Predicted membrane protein	NA
UHGV-0078339_8	eggNOG-mapper	411902.CLOBOL_05645	NA	NA
UHGV-0078339_8	Pfam	PF06541	Putative ABC-transporter type IV	ABC_trans_CmpB
UHGV-0078339_8	COG	COG4905	NA	NA
UHGV-0078339_8	Structural annotation	PF06541, COG4905	NA	NA
UHGV-0078339_9	PHROG	phrog_1348	tail fiber protein	tail
UHGV-0078339_9	UniRef90	UniRef90_A0A3R6JZM0	Acyl carrier protein	NA
UHGV-0078339_9	eggNOG-mapper	411902.CLOBOL_05646	NA	NA
UHGV-0078339_9	Structural annotation	PF14301	NA	NA
UHGV-0078339_11	eggNOG-mapper	411902.CLOBOL_05647	nuclear chromosome segregation	NA
UHGV-0078339_11	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0078339_12	PHROG	phrog_521	tail protein	tail
UHGV-0078339_12	UniRef90	UniRef90_A0A174R4L0	Phage-like element pbsx protein xkdT	NA
UHGV-0078339_12	eggNOG-mapper	610130.Closa_1410	NA	NA
UHGV-0078339_12	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0078339_12	COG	COG3778	NA	NA
UHGV-0078339_12	Structural annotation	PF10076, TIGR01634, COG3778	NA	NA
UHGV-0078339_13	PHROG	phrog_6	baseplate protein	tail
UHGV-0078339_13	UniRef90	UniRef90_A0A3D5L8T7	Baseplate J protein	NA
UHGV-0078339_13	eggNOG-mapper	1120998.AUFC01000013_gene2976	baseplate J-like protein	NA
UHGV-0078339_13	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0078339_13	COG	COG3299	NA	NA
UHGV-0078339_13	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0078339_14	PHROG	phrog_120	baseplate protein	tail
UHGV-0078339_14	UniRef90	UniRef90_A0A3D5LAN0	NA	NA
UHGV-0078339_14	eggNOG-mapper	610130.Closa_1408	NA	NA
UHGV-0078339_14	Pfam	PF10934	NA	DUF2634
UHGV-0078339_14	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0078339_14	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0078339_15	UniRef90	UniRef90_A0A3D5L8R0	DNA helicase	NA
UHGV-0078339_15	eggNOG-mapper	610130.Closa_1407	NA	NA
UHGV-0078339_16	PHROG	phrog_400	tail protein	tail
UHGV-0078339_16	UniRef90	UniRef90_A0A174R8Z2	NA	NA
UHGV-0078339_16	eggNOG-mapper	610130.Closa_1406	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0078339_16	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0078339_16	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0078339_17	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0078339_17	PHROG	phrog_380	endolysin	lysis
UHGV-0078339_17	UniRef90	UniRef90_A0A3D5L8C3	Peptidoglycan-binding protein	NA
UHGV-0078339_17	eggNOG-mapper	610130.Closa_1405	LysM domain	NA
UHGV-0078339_17	Pfam	PF01476	LysM domain	LysM
UHGV-0078339_17	COG	COG1388	LysM repeat	NA
UHGV-0078339_17	Structural annotation	PF21821, MF_02014, TIGR02126, NF010723, COG3499	NA	NA
UHGV-0078339_18	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0078339_18	UniRef90	UniRef90_UPI001C009D6E	tape measure protein	NA
UHGV-0078339_18	eggNOG-mapper	552396.HMPREF0863_00318	tape measure	NA
UHGV-0078339_18	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0078339_18	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0078339_18	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0078339_19	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0078339_19	UniRef90	UniRef90_A0A3D5L8L7	Phage portal protein	NA
UHGV-0078339_19	eggNOG-mapper	1121335.Clst_0400	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0078339_19	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0078339_19	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0078339_20	PHROG	phrog_365	tail protein	tail
UHGV-0078339_20	UniRef90	UniRef90_A0A417U0W1	Phage portal protein	NA
UHGV-0078339_20	eggNOG-mapper	1121335.Clst_0398	Phage tail tube protein	NA
UHGV-0078339_20	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0078339_20	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0078339_21	PHROG	phrog_279	tail sheath	tail
UHGV-0078339_21	UniRef90	UniRef90_A0A3D5L8B0	Phage tail sheath protein	NA
UHGV-0078339_21	eggNOG-mapper	610130.Closa_1400	Phage tail sheath C-terminal domain	NA
UHGV-0078339_21	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0078339_21	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0078339_21	Structural annotation	PF04984, PF17482, COG4386	NA	NA
UHGV-0078339_22	PHROG	phrog_525	NA	unknown function
UHGV-0078339_22	eggNOG-mapper	203119.Cthe_2483	NA	NA
UHGV-0078339_22	Pfam	PF20765	NA	DUF6838
UHGV-0078339_22	Structural annotation	PF20765	NA	NA
UHGV-0078339_23	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0078339_23	UniRef90	UniRef90_A0A417UGR4	HK97 gp10 family phage protein	NA
UHGV-0078339_23	eggNOG-mapper	203119.Cthe_2482	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0078339_23	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0078339_23	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0078339_24	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0078339_24	eggNOG-mapper	1121335.Clst_0394	NA	NA
UHGV-0078339_24	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0078339_25	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0078339_25	UniRef90	UniRef90_A0A1E3A379	Phage gp6-like head-tail connector protein	NA
UHGV-0078339_25	eggNOG-mapper	610130.Closa_1396	NA	NA
UHGV-0078339_25	Structural annotation	PF05135	NA	NA
UHGV-0078339_26	PHROG	phrog_247	major head protein	head and packaging
UHGV-0078339_26	UniRef90	UniRef90_A0A3R6WDT3	Coat protein	NA
UHGV-0078339_26	eggNOG-mapper	357809.Cphy_2964	NA	NA
UHGV-0078339_26	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0078339_26	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0078339_27	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0078339_27	UniRef90	UniRef90_UPI001F31D767	phage scaffolding protein	NA
UHGV-0078339_27	eggNOG-mapper	357809.Cphy_2965	Phage minor structural protein GP20	NA
UHGV-0078339_27	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0078339_27	Structural annotation	PF06810	NA	NA
UHGV-0078339_28	Structural annotation	PF11305, MF_01360	NA	NA
UHGV-0078339_31	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0078339_31	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0078339_31	UniRef90	UniRef90_UPI001C01BE4F	minor capsid protein	NA
UHGV-0078339_31	eggNOG-mapper	203119.Cthe_2476	Phage Mu protein F like protein	NA
UHGV-0078339_31	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0078339_31	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0078339_31	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0078339_31	COG	COG2369	NA	NA
UHGV-0078339_31	Structural annotation	PF03496, PF04233, MF_04139, NF040688, TIGR01641, COG2369	NA	NA
UHGV-0078339_32	PHROG	phrog_64	portal protein	head and packaging
UHGV-0078339_32	UniRef90	UniRef90_A0A3D5L896	Phage portal protein	NA
UHGV-0078339_32	eggNOG-mapper	610130.Closa_1391	Phage portal protein, SPP1 family	NA
UHGV-0078339_32	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0078339_32	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0078339_32	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0078339_33	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0078339_33	PHROG	phrog_10250	NA	unknown function
UHGV-0078339_33	UniRef90	UniRef90_A0A3D5L980	PBSX family phage terminase large subunit	NA
UHGV-0078339_33	eggNOG-mapper	642492.Clole_2765	Phage terminase, large subunit, PBSX family	NA
UHGV-0078339_33	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0078339_33	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0078339_33	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0078339_33	COG	COG1783	Phage terminase large subunit	NA
UHGV-0078339_33	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0078339_34	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0078339_34	UniRef90	UniRef90_A0A3D5L8R6	Terminase	NA
UHGV-0078339_34	eggNOG-mapper	33035.JPJF01000107_gene435	NA	NA
UHGV-0078339_34	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0078339_34	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0078339_34	COG	COG5484	NA	NA
UHGV-0078339_34	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-0078339_35	UniRef90	UniRef90_UPI0015704FD2	NA	NA
UHGV-0078339_35	Structural annotation	PF19363, PF04471, COG1787, COG3355	NA	NA