UHGV-0078476

Genome information

Genome length 33,641 bps

CDS count 51

Completeness 99.27% (high-quality)

geNomad score 0.9749

Prediction confidence Confident

Genome information
Genome ID	UHGV-0078476
vOTU ID	vOTU-008059
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_144821
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.27% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9749
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.22
Jumbo phage	No

Genome content
Genome length	33,641 bps
GC content	58.48%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	93.45%
Average CDS length	621.00 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0078476_1	PHROG	phrog_15303	NA	unknown function
UHGV-0078476_2	PHROG	phrog_9428	NA	unknown function
UHGV-0078476_2	UniRef90	UniRef90_A0A3E2TBT5	Serine/threonine protein kinase	NA
UHGV-0078476_2	eggNOG-mapper	1226322.HMPREF1545_03573	NA	NA
UHGV-0078476_3	KOfam	K07273	acm; lysozyme	NA
UHGV-0078476_3	PHROG	phrog_291	endolysin	lysis
UHGV-0078476_3	UniRef90	UniRef90_E2ZES5	Glycosyl hydrolase family 25	NA
UHGV-0078476_3	eggNOG-mapper	748224.HMPREF9436_00154	hydrolase, family 25	NA
UHGV-0078476_3	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0078476_3	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0078476_3	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0078476_4	PHROG	phrog_28526	NA	unknown function
UHGV-0078476_4	UniRef90	UniRef90_UPI00156FE2AD	NA	NA
UHGV-0078476_4	eggNOG-mapper	748224.HMPREF9436_00155	NA	NA
UHGV-0078476_4	Pfam	PF04255	NA	DUF433
UHGV-0078476_6	PHROG	phrog_9534	head protein	head and packaging
UHGV-0078476_6	UniRef90	UniRef90_E2ELJ8	Truncated putative phage structural protein	NA
UHGV-0078476_6	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-0078476_6	Structural annotation	PF20747	NA	NA
UHGV-0078476_7	PHROG	phrog_538	minor tail protein	tail
UHGV-0078476_7	UniRef90	UniRef90_A0A6B9JC65	Minor tail protein	NA
UHGV-0078476_7	eggNOG-mapper	931626.Awo_c30930	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0078476_7	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0078476_7	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0078476_8	PHROG	phrog_36410	NA	unknown function
UHGV-0078476_8	UniRef90	UniRef90_A0A564T4N7	Phage tail protein	NA
UHGV-0078476_8	eggNOG-mapper	748224.HMPREF9436_00700	Phage tail protein	NA
UHGV-0078476_8	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0078476_9	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0078476_9	eggNOG-mapper	748224.HMPREF9436_00699	Phage tail tape measure protein, TP901 family	NA
UHGV-0078476_9	COG	COG1511	NA	NA
UHGV-0078476_10	Structural annotation	PF17318	NA	NA
UHGV-0078476_11	PHROG	phrog_1526	NA	unknown function
UHGV-0078476_11	eggNOG-mapper	665950.HMPREF1025_02524	NA	NA
UHGV-0078476_12	PHROG	phrog_117	major tail protein	tail
UHGV-0078476_12	UniRef90	UniRef90_E2ZGB2	Prophage LambdaSa1, structural protein	NA
UHGV-0078476_12	eggNOG-mapper	748224.HMPREF9436_00696	domain, Protein	NA
UHGV-0078476_12	COG	COG5492	NA	NA
UHGV-0078476_12	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0078476_13	PHROG	phrog_123	tail terminator	connector
UHGV-0078476_13	eggNOG-mapper	748224.HMPREF9436_00695	NA	NA
UHGV-0078476_13	Structural annotation	PF06141	NA	NA
UHGV-0078476_14	PHROG	phrog_387	neck protein	connector
UHGV-0078476_14	eggNOG-mapper	748224.HMPREF9436_00694	NA	NA
UHGV-0078476_15	PHROG	phrog_501	head closure Hc1	connector
UHGV-0078476_15	UniRef90	UniRef90_A0A139QHM6	Phage-associated protein	NA
UHGV-0078476_15	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-0078476_15	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0078476_16	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0078476_16	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0078476_16	eggNOG-mapper	762211.BSTEL_0628	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0078476_16	Structural annotation	PF09355	NA	NA
UHGV-0078476_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-0078476_18	UniRef90	UniRef90_A0A1Y4TJU9	Phage major capsid protein	NA
UHGV-0078476_18	eggNOG-mapper	748224.HMPREF9436_00690	Phage capsid family	NA
UHGV-0078476_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0078476_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0078476_18	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0078476_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0078476_19	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0078476_19	UniRef90	UniRef90_D4K444	Phage minor structural protein GP20	NA
UHGV-0078476_19	eggNOG-mapper	748224.HMPREF9436_03336	Phage minor structural protein GP20	NA
UHGV-0078476_19	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0078476_19	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0078476_20	PHROG	phrog_6332	NA	unknown function
UHGV-0078476_20	UniRef90	UniRef90_E2ZIH6	Cys_rich_CPCC domain-containing protein	NA
UHGV-0078476_20	eggNOG-mapper	748224.HMPREF9436_01470	Cysteine-rich CPCC	NA
UHGV-0078476_20	Pfam	PF14206	Cysteine-rich CPCC	Cys_rich_CPCC
UHGV-0078476_20	Structural annotation	PF14206	NA	NA
UHGV-0078476_21	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0078476_21	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-0078476_21	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-0078476_21	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-0078476_21	Structural annotation	PF11429	NA	NA
UHGV-0078476_22	PHROG	phrog_104	portal protein	head and packaging
UHGV-0078476_22	UniRef90	UniRef90_A0A3E2U200	Phage portal protein	NA
UHGV-0078476_22	eggNOG-mapper	748224.HMPREF9436_01468	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0078476_22	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0078476_22	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0078476_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0078476_23	UniRef90	UniRef90_UPI001F1A3C47	terminase large subunit	NA
UHGV-0078476_23	eggNOG-mapper	748224.HMPREF9436_01467	phage terminase, large subunit	NA
UHGV-0078476_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0078476_23	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0078476_24	UniRef90	UniRef90_R6GFM0	Conserved domain protein	NA
UHGV-0078476_24	Structural annotation	PF19962	NA	NA
UHGV-0078476_25	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0078476_25	UniRef90	UniRef90_UPI0015F33F36	HNH endonuclease	NA
UHGV-0078476_25	eggNOG-mapper	748224.HMPREF9436_01465	NA	NA
UHGV-0078476_25	Structural annotation	PF01844	NA	NA
UHGV-0078476_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0078476_26	UniRef90	UniRef90_A0A3E2U224	Sigma70_r4_2 domain-containing protein	NA
UHGV-0078476_26	eggNOG-mapper	748224.HMPREF9436_01463	NA	NA
UHGV-0078476_26	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0078476_27	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0078476_27	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0078476_27	UniRef90	UniRef90_E2ZIG8	Nucleoside triphosphatase, D5 family	NA
UHGV-0078476_27	eggNOG-mapper	748224.HMPREF9436_01462	Phage plasmid primase, P4 family	NA
UHGV-0078476_27	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0078476_27	Pfam	PF19263	NA	DUF5906
UHGV-0078476_27	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0078476_27	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0078476_27	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0078476_27	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF011296, COG3378, COG4983	NA	NA
UHGV-0078476_28	Structural annotation	PF05037	NA	NA
UHGV-0078476_29	KOfam	K18959	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	NA
UHGV-0078476_29	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0078476_29	UniRef90	UniRef90_E2ZIG6	Helicase C-terminal domain protein	NA
UHGV-0078476_29	eggNOG-mapper	748224.HMPREF9436_01460	Type III restriction protein res subunit	NA
UHGV-0078476_29	PADLOC	mREase_IV_00004	Type IV methyl-directed restriction enzyme	RM
UHGV-0078476_29	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0078476_29	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0078476_29	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0078476_29	Structural annotation	PF04851, PF16203, MF_01489, TIGR00603, COG1061	NA	NA
UHGV-0078476_30	Structural annotation	PF03838, MF_00130, TIGR00648, COG3331	NA	NA
UHGV-0078476_31	PHROG	phrog_1366	NA	unknown function
UHGV-0078476_31	UniRef90	UniRef90_R6S946	AAA domain-containing protein	NA
UHGV-0078476_31	eggNOG-mapper	748224.HMPREF9436_01458	AAA domain	NA
UHGV-0078476_31	Pfam	PF13479	AAA domain	AAA_24
UHGV-0078476_31	COG	COG0468	RecA/RadA recombinase	NA
UHGV-0078476_31	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0078476_33	KOfam	K03529	smc; chromosome segregation protein	NA
UHGV-0078476_33	Structural annotation	PF03677	NA	NA
UHGV-0078476_34	UniRef90	UniRef90_UPI001D0E65C2	NA	NA
UHGV-0078476_34	Structural annotation	PF12957	NA	NA
UHGV-0078476_38	PHROG	phrog_37789	NA	unknown function
UHGV-0078476_39	PHROG	phrog_32852	NA	unknown function
UHGV-0078476_40	UniRef90	UniRef90_UPI00130EBC54	NA	NA
UHGV-0078476_40	eggNOG-mapper	762051.LKI_01980	NA	NA
UHGV-0078476_40	Pfam	PF05339	NA	DUF739
UHGV-0078476_40	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0078476_40	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0078476_41	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0078476_41	UniRef90	UniRef90_E2ZIF5	Phage regulatory protein, Rha family	NA
UHGV-0078476_41	eggNOG-mapper	748224.HMPREF9436_01449	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0078476_41	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0078476_41	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0078476_41	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0078476_41	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0078476_43	PHROG	phrog_2232	NA	unknown function
UHGV-0078476_43	UniRef90	UniRef90_A0A6A7K9D3	NA	NA
UHGV-0078476_43	eggNOG-mapper	748224.HMPREF9436_01448	NA	NA
UHGV-0078476_43	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-0078476_43	Structural annotation	PF14337, TIGR03899	NA	NA
UHGV-0078476_46	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0078476_46	UniRef90	UniRef90_A0A3A6EAL3	NA	NA
UHGV-0078476_46	eggNOG-mapper	748224.HMPREF9436_01446	NA	NA
UHGV-0078476_47	PHROG	phrog_14088	NA	unknown function
UHGV-0078476_47	UniRef90	UniRef90_UPI001D07CB3C	carboxypeptidase	NA
UHGV-0078476_47	eggNOG-mapper	1235802.C823_04730	NA	NA
UHGV-0078476_48	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0078476_48	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0078476_48	UniRef90	UniRef90_E2ZIF0	DNA-binding helix-turn-helix protein	NA
UHGV-0078476_48	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0078476_48	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0078476_48	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0078476_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0078476_48	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0078476_50	eggNOG-mapper	748224.HMPREF9436_01443	vancomycin resistance protein	NA
UHGV-0078476_50	COG	COG2720	Vancomycin resistance protein YoaR (function unknown), contains peptidoglycan-binding and VanW domains	NA
UHGV-0078476_51	KOfam	K14059	int; integrase	NA
UHGV-0078476_51	PHROG	phrog_1	integrase	integration and excision
UHGV-0078476_51	UniRef90	UniRef90_E2ZIE8	Site-specific recombinase, phage integrase family	NA
UHGV-0078476_51	eggNOG-mapper	748224.HMPREF9436_01442	Belongs to the 'phage' integrase family	NA
UHGV-0078476_51	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0078476_51	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0078476_51	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA