UHGV-0078550

Genome information

Genome length 42,717 bps

CDS count 69

Completeness 74.10% (medium-quality)

geNomad score 0.9819

Prediction confidence Confident

Genome information
Genome ID	UHGV-0078550
vOTU ID	vOTU-025913
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_149283
BioSample	NA
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.10% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9819
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.38
Jumbo phage	No

Genome content
Genome length	42,717 bps
GC content	40.21%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	92.01%
Average CDS length	572.13 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0078550_1	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0078550_1	eggNOG-mapper	658655.HMPREF0988_00884	NA	NA
UHGV-0078550_1	AcrCatalog	cluster_47493	NA	NA
UHGV-0078550_4	PHROG	phrog_874	NA	unknown function
UHGV-0078550_4	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-0078550_4	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0078550_4	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0078550_5	PHROG	phrog_20593	NA	unknown function
UHGV-0078550_6	eggNOG-mapper	397290.C810_05186	NA	NA
UHGV-0078550_7	eggNOG-mapper	1235790.C805_00035	NA	NA
UHGV-0078550_8	PHROG	phrog_21026	NA	unknown function
UHGV-0078550_11	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0078550_11	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0078550_11	UniRef90	UniRef90_A0A173RD23	DNA helicase	NA
UHGV-0078550_11	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-0078550_11	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0078550_11	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0078550_11	COG	COG0305	Replicative DNA helicase	NA
UHGV-0078550_11	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0078550_12	PHROG	phrog_11769	NA	unknown function
UHGV-0078550_12	UniRef90	UniRef90_A0A173RDT0	Phage replisome organizer, putative, N-terminal region	NA
UHGV-0078550_12	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0078550_12	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0078550_12	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0078550_12	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0078550_13	PHROG	phrog_19106	NA	unknown function
UHGV-0078550_13	UniRef90	UniRef90_A0A412EKN4	GIY-YIG nuclease family protein	NA
UHGV-0078550_13	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0078550_13	Structural annotation	TIGR01453	NA	NA
UHGV-0078550_14	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0078550_14	UniRef90	UniRef90_A0A7U3T981	Helix-turn-helix DNA binding domain protein	NA
UHGV-0078550_14	eggNOG-mapper	1460635.JCM19038_3433	NA	NA
UHGV-0078550_17	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0078550_17	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0078550_17	UniRef90	UniRef90_A0A173REW9	Beta-lactamase superfamily domain	NA
UHGV-0078550_17	eggNOG-mapper	1144313.PMI10_00501	Metallo-beta-lactamase superfamily	NA
UHGV-0078550_17	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0078550_17	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0078550_17	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0078550_19	PHROG	phrog_25456	NA	unknown function
UHGV-0078550_20	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0078550_20	UniRef90	UniRef90_UPI00157154DF	recombinase RecT	NA
UHGV-0078550_20	eggNOG-mapper	1232453.BAIF02000057_gene1136	NA	NA
UHGV-0078550_20	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0078550_21	eggNOG-mapper	1232453.BAIF02000057_gene1135	NA	NA
UHGV-0078550_24	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0078550_24	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0078550_24	UniRef90	UniRef90_A0A413Z5U6	AAA_23 domain-containing protein	NA
UHGV-0078550_24	eggNOG-mapper	1294142.CINTURNW_1008	nuclear chromosome segregation	NA
UHGV-0078550_24	Pfam	PF13476	AAA domain	AAA_23
UHGV-0078550_24	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0078550_24	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0078550_26	PHROG	phrog_26861	NA	unknown function
UHGV-0078550_26	UniRef90	UniRef90_A0A173RCS5	Single-stranded DNA-binding protein	NA
UHGV-0078550_26	eggNOG-mapper	483218.BACPEC_01931	Single-strand binding protein family	NA
UHGV-0078550_26	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0078550_26	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0078550_26	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0078550_31	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-0078550_31	UniRef90	UniRef90_UPI001D00AF42	ORF6N domain-containing protein	NA
UHGV-0078550_31	eggNOG-mapper	926561.KB900622_gene670	ORF6N domain	NA
UHGV-0078550_31	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0078550_31	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0078550_31	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-0078550_33	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0078550_33	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0078550_33	UniRef90	UniRef90_A0A1Q6LL24	HTH cro/C1-type domain-containing protein	NA
UHGV-0078550_33	eggNOG-mapper	642492.Clole_0718	DNA-binding helix-turn-helix protein	NA
UHGV-0078550_33	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0078550_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0078550_33	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0078550_33	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0078550_34	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0078550_34	Structural annotation	NF040910	NA	NA
UHGV-0078550_35	eggNOG-mapper	1232452.BAIB02000007_gene1607	NA	NA
UHGV-0078550_36	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0078550_37	PHROG	phrog_17196	kinase	other
UHGV-0078550_37	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0078550_37	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-0078550_38	PHROG	phrog_18190	NA	unknown function
UHGV-0078550_38	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-0078550_38	eggNOG-mapper	397290.C810_05239	NA	NA
UHGV-0078550_38	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0078550_38	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0078550_39	PHROG	phrog_1194	NA	unknown function
UHGV-0078550_39	Pfam	PF20458	NA	DUF6711
UHGV-0078550_39	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0078550_40	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0078550_40	UniRef90	UniRef90_A0A1I0BKG6	BRO family, N-terminal domain	NA
UHGV-0078550_40	eggNOG-mapper	1443125.Z962_p0009	BRO family, N-terminal domain	NA
UHGV-0078550_40	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0078550_40	COG	COG3617	Prophage antirepressor	NA
UHGV-0078550_40	Structural annotation	PF02498, COG3617	NA	NA
UHGV-0078550_42	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-0078550_42	UniRef90	UniRef90_A0A413YTH5	ORF6N domain-containing protein	NA
UHGV-0078550_42	eggNOG-mapper	1408823.AXUS01000024_gene2689	ORF6C domain	NA
UHGV-0078550_42	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0078550_42	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0078550_43	UniRef90	UniRef90_A0A416L831	Toxin-antitoxin system HicB family antitoxin	NA
UHGV-0078550_43	Structural annotation	PF16777, NF010256, COG4877	NA	NA
UHGV-0078550_44	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0078550_44	UniRef90	UniRef90_A0A3A9FQ68	Ig domain-containing protein	NA
UHGV-0078550_44	eggNOG-mapper	1410658.JHWI01000043_gene447	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS	NA
UHGV-0078550_44	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0078550_44	COG	COG0607	Rhodanese-related sulfurtransferase	NA
UHGV-0078550_44	Structural annotation	PF02368, PF07233, NF038353, NF005261	NA	NA
UHGV-0078550_45	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0078550_45	eggNOG-mapper	1211844.CBLM010000016_gene1482	tape measure	NA
UHGV-0078550_45	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0078550_45	Structural annotation	PF20155, MF_04138	NA	NA
UHGV-0078550_46	PHROG	phrog_14030	NA	unknown function
UHGV-0078550_46	UniRef90	UniRef90_A0A3R6ARM6	Peptidoglycan-binding protein	NA
UHGV-0078550_46	eggNOG-mapper	1235793.C809_02691	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0078550_46	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0078550_49	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-0078550_49	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0078550_50	Structural annotation	PF05657	NA	NA
UHGV-0078550_51	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0078550_51	AcrCatalog	cluster_24841	NA	NA
UHGV-0078550_52	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0078550_53	PHROG	phrog_443	holin	lysis
UHGV-0078550_53	UniRef90	UniRef90_UPI000BA3B743	holin	NA
UHGV-0078550_53	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-0078550_53	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0078550_53	Structural annotation	PF16945	NA	NA
UHGV-0078550_54	PHROG	phrog_4105	NA	unknown function
UHGV-0078550_54	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0078550_55	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0078550_56	UniRef90	UniRef90_A0A416G2T8	Rho_N domain-containing protein	NA
UHGV-0078550_56	Structural annotation	PF21169	NA	NA
UHGV-0078550_57	PHROG	phrog_29	major head protein	head and packaging
UHGV-0078550_57	UniRef90	UniRef90_UPI001D02C54B	major capsid protein	NA
UHGV-0078550_57	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-0078550_57	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0078550_57	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0078550_58	PHROG	phrog_909	major head protein	head and packaging
UHGV-0078550_58	eggNOG-mapper	1298920.KI911353_gene2661	NA	NA
UHGV-0078550_59	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0078550_60	PHROG	phrog_64	portal protein	head and packaging
UHGV-0078550_60	UniRef90	UniRef90_A0A173UGW9	Phage portal protein, SPP1 family	NA
UHGV-0078550_60	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0078550_60	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0078550_60	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0078550_61	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0078550_61	UniRef90	UniRef90_A0A410QFZ6	NA	NA
UHGV-0078550_61	eggNOG-mapper	994573.T472_0211085	sigma factor activity	NA
UHGV-0078550_61	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0078550_61	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0078550_62	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0078550_62	UniRef90	UniRef90_A0A8D9PG33	Terminase	NA
UHGV-0078550_62	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0078550_62	COG	COG5410	NA	NA
UHGV-0078550_62	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0078550_63	PHROG	phrog_2316	NA	unknown function
UHGV-0078550_63	UniRef90	UniRef90_A0A3E4YBW5	NA	NA
UHGV-0078550_63	eggNOG-mapper	1157490.EL26_01915	NA	NA
UHGV-0078550_63	Structural annotation	PF16475, MF_00436, NF033216, COG1923	NA	NA
UHGV-0078550_67	PHROG	phrog_25639	NA	unknown function