UHGV-0078553

Genome information

Genome length 36,477 bps

CDS count 54

Completeness 98.78% (high-quality)

geNomad score 0.9798

Prediction confidence Confident

Genome information
Genome ID	UHGV-0078553
vOTU ID	vOTU-008178
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_149292
BioSample	NA
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.78% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9798
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	67.69
Jumbo phage	No

Genome content
Genome length	36,477 bps
GC content	35.25%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	92.39%
Average CDS length	627.17 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0078553_1	eggNOG-mapper	411461.DORFOR_00023	NA	NA
UHGV-0078553_2	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0078553_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0078553_2	UniRef90	UniRef90_A0A416W194	XRE family transcriptional regulator	NA
UHGV-0078553_2	eggNOG-mapper	1256908.HMPREF0373_00646	Helix-turn-helix XRE-family like proteins	NA
UHGV-0078553_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0078553_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0078553_2	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0078553_3	UniRef90	UniRef90_A0A415L439	Protein phosphatase	NA
UHGV-0078553_3	eggNOG-mapper	411902.CLOBOL_03859	NA	NA
UHGV-0078553_3	AcrCatalog	cluster_13845	NA	NA
UHGV-0078553_4	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0078553_4	UniRef90	UniRef90_UPI001C02AACE	helix-turn-helix domain-containing protein	NA
UHGV-0078553_4	eggNOG-mapper	476272.RUMHYD_03305	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0078553_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0078553_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0078553_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0078553_5	PHROG	phrog_87	metallo-protease	other
UHGV-0078553_5	UniRef90	UniRef90_A0A415LA34	Peptidase_M78 domain-containing protein	NA
UHGV-0078553_5	eggNOG-mapper	556261.HMPREF0240_01267	Zn peptidase	NA
UHGV-0078553_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0078553_5	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0078553_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0078553_6	PHROG	phrog_7115	NA	unknown function
UHGV-0078553_6	UniRef90	UniRef90_A0A413RCY4	PH domain-containing protein	NA
UHGV-0078553_6	eggNOG-mapper	1514668.JOOA01000002_gene2950	Bacterial PH domain	NA
UHGV-0078553_6	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-0078553_6	Structural annotation	PF08000, MF_00437	NA	NA
UHGV-0078553_7	KOfam	K14059	int; integrase	NA
UHGV-0078553_7	PHROG	phrog_1	integrase	integration and excision
UHGV-0078553_7	UniRef90	UniRef90_A0A415LAF0	Site-specific integrase	NA
UHGV-0078553_7	eggNOG-mapper	1321778.HMPREF1982_01189	Site-specific recombinase, phage integrase family	NA
UHGV-0078553_7	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0078553_7	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0078553_7	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0078553_7	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0078553_7	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0078553_8	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0078553_8	PHROG	phrog_2649	endolysin	lysis
UHGV-0078553_8	UniRef90	UniRef90_A0A413R469	M15 family peptidase	NA
UHGV-0078553_8	eggNOG-mapper	1123075.AUDP01000024_gene1109	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0078553_8	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0078553_8	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0078553_8	Structural annotation	PF02557, MF_01924, NF000472, COG1876	NA	NA
UHGV-0078553_9	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0078553_9	UniRef90	UniRef90_A0A415G5B2	NA	NA
UHGV-0078553_9	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0078553_9	Structural annotation	PF14359	NA	NA
UHGV-0078553_10	PHROG	phrog_443	holin	lysis
UHGV-0078553_10	UniRef90	UniRef90_A0A1I0HNR6	Holin, r1t family	NA
UHGV-0078553_10	eggNOG-mapper	397290.C810_01405	Putative lactococcus lactis phage r1t holin	NA
UHGV-0078553_10	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0078553_10	Structural annotation	PF16945	NA	NA
UHGV-0078553_11	PHROG	phrog_4105	NA	unknown function
UHGV-0078553_11	eggNOG-mapper	1121105.ATXL01000027_gene760	NA	NA
UHGV-0078553_12	PHROG	phrog_3971	NA	unknown function
UHGV-0078553_14	eggNOG-mapper	411470.RUMGNA_00122	NA	NA
UHGV-0078553_15	UniRef90	UniRef90_UPI001314AFC7	collagen-like protein	NA
UHGV-0078553_15	eggNOG-mapper	742733.HMPREF9469_01804	NA	NA
UHGV-0078553_16	PHROG	phrog_17180	NA	unknown function
UHGV-0078553_16	eggNOG-mapper	1268240.ATFI01000012_gene1337	NA	NA
UHGV-0078553_18	PHROG	phrog_1194	NA	unknown function
UHGV-0078553_18	eggNOG-mapper	1235790.C805_00088	NA	NA
UHGV-0078553_18	Pfam	PF20458	NA	DUF6711
UHGV-0078553_18	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0078553_19	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0078553_19	eggNOG-mapper	1280692.AUJL01000027_gene2150	phage tail tape measure protein	NA
UHGV-0078553_19	COG	COG1511	NA	NA
UHGV-0078553_19	Structural annotation	PF11172	NA	NA
UHGV-0078553_20	PHROG	phrog_706	NA	unknown function
UHGV-0078553_20	UniRef90	UniRef90_A0A1C5M8I2	Bacteriophage Gp15 protein	NA
UHGV-0078553_20	eggNOG-mapper	1449050.JNLE01000003_gene3882	Bacteriophage Gp15 protein	NA
UHGV-0078553_20	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0078553_20	Structural annotation	PF06854	NA	NA
UHGV-0078553_21	PHROG	phrog_11299	NA	unknown function
UHGV-0078553_21	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0078553_21	Structural annotation	PF10666	NA	NA
UHGV-0078553_22	PHROG	phrog_3099	NA	unknown function
UHGV-0078553_22	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-0078553_22	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0078553_23	PHROG	phrog_3266	tail completion	connector
UHGV-0078553_23	eggNOG-mapper	1304866.K413DRAFT_3042	NA	NA
UHGV-0078553_23	Structural annotation	PF20765	NA	NA
UHGV-0078553_24	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0078553_24	UniRef90	UniRef90_UPI001B3C5A2B	minor capsid protein	NA
UHGV-0078553_24	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0078553_24	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0078553_24	Structural annotation	PF11114	NA	NA
UHGV-0078553_25	PHROG	phrog_3366	NA	unknown function
UHGV-0078553_25	eggNOG-mapper	1304866.K413DRAFT_3040	NA	NA
UHGV-0078553_26	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0078553_26	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-0078553_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-0078553_27	UniRef90	UniRef90_A0A416VUP1	Phage major capsid protein	NA
UHGV-0078553_27	eggNOG-mapper	1449050.JNLE01000003_gene3889	Phage capsid family	NA
UHGV-0078553_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0078553_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0078553_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0078553_27	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0078553_28	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0078553_28	UniRef90	UniRef90_UPI000E449396	phage scaffolding protein	NA
UHGV-0078553_28	eggNOG-mapper	411902.CLOBOL_00135	COG NOG36366 non supervised orthologous group	NA
UHGV-0078553_28	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0078553_28	Structural annotation	PF06810	NA	NA
UHGV-0078553_29	PHROG	phrog_3675	NA	unknown function
UHGV-0078553_29	UniRef90	UniRef90_UPI001C02868E	YjcQ family protein	NA
UHGV-0078553_29	eggNOG-mapper	1235799.C818_04221	YjcQ protein	NA
UHGV-0078553_29	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0078553_29	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0078553_31	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0078553_31	UniRef90	UniRef90_UPI001570CBC5	phage minor capsid protein	NA
UHGV-0078553_31	eggNOG-mapper	1449050.JNLE01000003_gene3892	Phage minor capsid protein 2	NA
UHGV-0078553_31	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0078553_31	COG	COG2369	NA	NA
UHGV-0078553_31	Structural annotation	PF06152, PF15887, TIGR01641, COG4307	NA	NA
UHGV-0078553_32	PHROG	phrog_533	portal protein	head and packaging
UHGV-0078553_32	UniRef90	UniRef90_A0A416VUR7	Phage portal protein	NA
UHGV-0078553_32	eggNOG-mapper	411902.CLOBOL_00138	NA	NA
UHGV-0078553_32	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0078553_32	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0078553_33	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0078553_33	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0078553_33	UniRef90	UniRef90_A0A416VUT0	PBSX family phage terminase large subunit	NA
UHGV-0078553_33	eggNOG-mapper	1449050.JNLE01000003_gene3895	phage terminase, large subunit, PBSX family	NA
UHGV-0078553_33	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0078553_33	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0078553_33	COG	COG1783	Phage terminase large subunit	NA
UHGV-0078553_33	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0078553_34	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0078553_34	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0078553_34	UniRef90	UniRef90_A0A416VUY5	Phage portal protein	NA
UHGV-0078553_34	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0078553_34	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0078553_34	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0078553_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-0078553_35	PHROG	phrog_9479	NA	unknown function
UHGV-0078553_35	Structural annotation	PF15529	NA	NA
UHGV-0078553_36	Structural annotation	PF06167, NF041907	NA	NA
UHGV-0078553_37	PHROG	phrog_8680	NA	unknown function
UHGV-0078553_37	UniRef90	UniRef90_A0A413TTC4	NA	NA
UHGV-0078553_37	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0078553_37	Pfam	PF14386	NA	DUF4417
UHGV-0078553_37	Structural annotation	PF14386	NA	NA
UHGV-0078553_38	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0078553_38	UniRef90	UniRef90_A0A7C6D6F2	Sigma70_r4 domain-containing protein	NA
UHGV-0078553_38	eggNOG-mapper	1111454.HMPREF1250_0009	NA	NA
UHGV-0078553_38	Structural annotation	PF07374, MF_00674, NF005248, COG2739	NA	NA
UHGV-0078553_40	PHROG	phrog_20593	NA	unknown function
UHGV-0078553_43	PHROG	phrog_21026	NA	unknown function
UHGV-0078553_44	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0078553_44	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0078553_44	UniRef90	UniRef90_A0A413RDS9	Methyltransferase	NA
UHGV-0078553_44	eggNOG-mapper	658655.HMPREF0988_00878	DNA methylase	NA
UHGV-0078553_44	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0078553_44	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0078553_44	COG	COG0863	DNA modification methylase	NA
UHGV-0078553_44	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0078553_45	PHROG	phrog_17690	NA	unknown function
UHGV-0078553_45	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0078553_45	eggNOG-mapper	33035.JPJF01000123_gene2433	NA	NA
UHGV-0078553_48	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0078553_48	UniRef90	UniRef90_A0A413RCW1	NA	NA
UHGV-0078553_48	eggNOG-mapper	537013.CLOSTMETH_01717	NA	NA
UHGV-0078553_48	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0078553_48	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0078553_48	Structural annotation	PF14297	NA	NA
UHGV-0078553_49	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0078553_49	eggNOG-mapper	33035.JPJF01000122_gene2460	NA	NA
UHGV-0078553_49	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0078553_50	PHROG	phrog_2113	NA	unknown function
UHGV-0078553_50	Structural annotation	PF21715, COG1654	NA	NA
UHGV-0078553_51	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0078553_51	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0078553_51	UniRef90	UniRef90_A0A413RCV3	Recombinase	NA
UHGV-0078553_51	eggNOG-mapper	1095750.HMPREF9970_1675	RecT family	NA
UHGV-0078553_51	Pfam	PF03837	RecT family	RecT
UHGV-0078553_51	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0078553_51	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0078553_51	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0078553_52	PHROG	phrog_674	NA	unknown function
UHGV-0078553_52	UniRef90	UniRef90_A0A413RZX0	NA	NA
UHGV-0078553_52	eggNOG-mapper	742740.HMPREF9474_03487	NA	NA
UHGV-0078553_52	Pfam	PF07083	NA	DUF1351
UHGV-0078553_52	Structural annotation	PF07083	NA	NA
UHGV-0078553_53	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0078553_53	UniRef90	UniRef90_K1SBE3	Phage-type endonuclease family protein (Fragment)	NA
UHGV-0078553_53	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-0078553_53	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0078553_53	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0078553_53	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0078553_53	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA