UHGV-0078708

Genome information

Genome length 35,560 bps

CDS count 64

Completeness 84.30% (medium-quality)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-0078708
vOTU ID	vOTU-026542
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_164498
BioSample	NA
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.30% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.23
Jumbo phage	No

Genome content
Genome length	35,560 bps
GC content	54.59%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	91.80%
Average CDS length	513.19 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0078708_1	PHROG	phrog_27197	NA	unknown function
UHGV-0078708_1	eggNOG-mapper	767434.Fraau_1460	regulation of DNA-templated transcription, elongation	NA
UHGV-0078708_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0078708_2	UniRef90	UniRef90_A0A8D9UH91	HTH cro/C1-type domain-containing protein	NA
UHGV-0078708_2	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0078708_2	Structural annotation	PF01381, PF21715, NF041951, TIGR04176, COG1476, COG1654	NA	NA
UHGV-0078708_4	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0078708_4	UniRef90	UniRef90_A0A8D9PDS3	Resistance protein	NA
UHGV-0078708_4	eggNOG-mapper	748224.HMPREF9436_03356	Siphovirus Gp157	NA
UHGV-0078708_4	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0078708_4	Structural annotation	PF05565	NA	NA
UHGV-0078708_5	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0078708_5	UniRef90	UniRef90_UPI001C126E67	ERF family protein	NA
UHGV-0078708_5	eggNOG-mapper	559189.B6SBX8_9CAUD	ERF superfamily	NA
UHGV-0078708_5	Pfam	PF04404	ERF superfamily	ERF
UHGV-0078708_5	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0078708_6	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0078708_6	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0078708_6	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0078708_6	Structural annotation	PF05772	NA	NA
UHGV-0078708_8	PHROG	phrog_7566	NA	unknown function
UHGV-0078708_8	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0078708_8	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0078708_9	Structural annotation	PF12844, MF_00535, NF041951, COG5499	NA	NA
UHGV-0078708_10	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0078708_10	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0078708_10	UniRef90	UniRef90_A0A8D9PDS7	Single strand binding protein	NA
UHGV-0078708_10	eggNOG-mapper	1203606.HMPREF1526_01880	Single-stranded DNA-binding protein	NA
UHGV-0078708_10	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0078708_10	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0078708_10	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0078708_10	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0078708_10	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0078708_11	PHROG	phrog_15768	NA	unknown function
UHGV-0078708_11	UniRef90	UniRef90_A0A8D9PDU3	NA	NA
UHGV-0078708_11	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-0078708_11	Pfam	PF19808	NA	DUF6291
UHGV-0078708_11	Structural annotation	PF19808	NA	NA
UHGV-0078708_13	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0078708_13	UniRef90	UniRef90_A0A8D9PDD6	Endonuclease	NA
UHGV-0078708_13	eggNOG-mapper	862517.HMPREF9225_1657	NA	NA
UHGV-0078708_13	Pfam	PF06356	NA	DUF1064
UHGV-0078708_13	Structural annotation	PF06356	NA	NA
UHGV-0078708_14	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0078708_14	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0078708_14	UniRef90	UniRef90_UPI001331804A	site-specific DNA-methyltransferase	NA
UHGV-0078708_14	eggNOG-mapper	1268240.ATFI01000007_gene431	DNA methylase	NA
UHGV-0078708_14	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0078708_14	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0078708_14	COG	COG0863	DNA modification methylase	NA
UHGV-0078708_14	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0078708_16	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0078708_16	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0078708_16	UniRef90	UniRef90_A0A1C5KYC3	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0078708_16	eggNOG-mapper	871963.Desdi_1341	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0078708_16	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0078708_16	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0078708_16	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0078708_17	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0078708_17	UniRef90	UniRef90_A0A1L5KS67	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0078708_17	eggNOG-mapper	445972.ANACOL_03344	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0078708_17	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0078708_17	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0078708_17	Structural annotation	PF05869, TIGR01712, COG0338	NA	NA
UHGV-0078708_19	UniRef90	UniRef90_A0A8D9PDK1	Anti-repressor	NA
UHGV-0078708_22	PHROG	phrog_38832	NA	unknown function
UHGV-0078708_22	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0078708_23	UniRef90	UniRef90_A0A8D9PDK2	Zinc-ribbon containing domain	NA
UHGV-0078708_25	Structural annotation	PF06003, MF_01354, TIGR00739, COG5475	NA	NA
UHGV-0078708_26	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0078708_27	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0078708_27	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0078708_27	eggNOG-mapper	445972.ANACOL_01838	DNA-packaging protein gp3	NA
UHGV-0078708_27	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0078708_27	Structural annotation	PF16677	NA	NA
UHGV-0078708_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0078708_28	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0078708_28	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0078708_28	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0078708_28	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0078708_28	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0078708_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0078708_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0078708_28	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0078708_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-0078708_29	UniRef90	UniRef90_UPI0006C81717	phage portal protein	NA
UHGV-0078708_29	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0078708_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0078708_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0078708_30	PHROG	phrog_28328	NA	unknown function
UHGV-0078708_30	eggNOG-mapper	428125.CLOLEP_01381	NA	NA
UHGV-0078708_31	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0078708_31	UniRef90	UniRef90_UPI001D080D49	phage minor capsid protein	NA
UHGV-0078708_31	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0078708_31	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0078708_31	COG	COG2369	NA	NA
UHGV-0078708_31	Structural annotation	PF06152	NA	NA
UHGV-0078708_32	Structural annotation	PF18152	NA	NA
UHGV-0078708_33	UniRef90	UniRef90_A0A2Z4Q9Y8	Minor structural protein	NA
UHGV-0078708_33	eggNOG-mapper	1232443.BAIA02000078_gene31	NA	NA
UHGV-0078708_33	Structural annotation	PF06810	NA	NA
UHGV-0078708_34	PHROG	phrog_10	major head protein	head and packaging
UHGV-0078708_34	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-0078708_34	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0078708_34	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0078708_34	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0078708_34	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0078708_34	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0078708_35	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0078708_35	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0078708_36	PHROG	phrog_3366	NA	unknown function
UHGV-0078708_36	eggNOG-mapper	1226322.HMPREF1545_00053	NA	NA
UHGV-0078708_36	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0078708_37	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0078708_37	UniRef90	UniRef90_UPI00195E1497	minor capsid protein	NA
UHGV-0078708_37	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0078708_37	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0078708_37	Structural annotation	PF11114	NA	NA
UHGV-0078708_38	PHROG	phrog_3266	tail completion	connector
UHGV-0078708_38	UniRef90	UniRef90_A0A2Z4QA01	Minor capsid protein	NA
UHGV-0078708_38	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0078708_38	Structural annotation	PF12691	NA	NA
UHGV-0078708_39	PHROG	phrog_3099	NA	unknown function
UHGV-0078708_39	eggNOG-mapper	1226322.HMPREF1545_00056	NA	NA
UHGV-0078708_39	Structural annotation	TIGR02126	NA	NA
UHGV-0078708_40	PHROG	phrog_11299	NA	unknown function
UHGV-0078708_40	eggNOG-mapper	693746.OBV_18160	NA	NA
UHGV-0078708_40	Structural annotation	PF10666	NA	NA
UHGV-0078708_41	PHROG	phrog_706	NA	unknown function
UHGV-0078708_41	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0078708_41	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0078708_41	Structural annotation	PF06854	NA	NA
UHGV-0078708_42	PHROG	phrog_706	NA	unknown function
UHGV-0078708_42	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-0078708_42	eggNOG-mapper	1235797.C816_04184	Bacteriophage Gp15 protein	NA
UHGV-0078708_42	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0078708_43	PHROG	phrog_806	NA	unknown function
UHGV-0078708_43	UniRef90	UniRef90_A0A212ITM5	Telomeric repeat-binding factor 2	NA
UHGV-0078708_43	eggNOG-mapper	476272.RUMHYD_01730	NA	NA
UHGV-0078708_43	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0078708_43	Pfam	PF11611	NA	DUF4352
UHGV-0078708_43	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0078708_44	KOfam	K03529	smc; chromosome segregation protein	NA
UHGV-0078708_44	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0078708_44	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0078708_44	eggNOG-mapper	1235797.C816_04182	SLT domain	NA
UHGV-0078708_44	COG	COG1511	NA	NA
UHGV-0078708_44	Structural annotation	PF16789, TIGR02473	NA	NA
UHGV-0078708_45	PHROG	phrog_1194	NA	unknown function
UHGV-0078708_45	eggNOG-mapper	1226322.HMPREF1545_00060	NA	NA
UHGV-0078708_45	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0078708_46	PHROG	phrog_13879	NA	unknown function
UHGV-0078708_46	eggNOG-mapper	1226322.HMPREF1545_00061	NA	NA
UHGV-0078708_46	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0078708_47	PHROG	phrog_18725	NA	unknown function
UHGV-0078708_47	eggNOG-mapper	1235797.C816_02657	NA	NA
UHGV-0078708_47	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0078708_49	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0078708_49	Structural annotation	PF21722	NA	NA
UHGV-0078708_51	PHROG	phrog_2295	NA	unknown function
UHGV-0078708_51	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0078708_51	Structural annotation	PF21722	NA	NA
UHGV-0078708_52	PHROG	phrog_2310	NA	unknown function
UHGV-0078708_52	eggNOG-mapper	1151292.QEW_0364	NA	NA
UHGV-0078708_54	PHROG	phrog_4105	NA	unknown function
UHGV-0078708_54	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0078708_54	eggNOG-mapper	411460.RUMTOR_01326	NA	NA
UHGV-0078708_55	PHROG	phrog_1129	holin	lysis
UHGV-0078708_55	UniRef90	UniRef90_A0A8D9PDD4	Holin	NA
UHGV-0078708_55	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0078708_55	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0078708_55	Structural annotation	PF06946	NA	NA
UHGV-0078708_56	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0078708_56	PHROG	phrog_435	endolysin	lysis
UHGV-0078708_56	UniRef90	UniRef90_A0A8D9PDS4	Cell wall hydrolase/autolysin	NA
UHGV-0078708_56	eggNOG-mapper	1226322.HMPREF1545_01953	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0078708_56	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0078708_56	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0078708_56	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0078708_58	PHROG	phrog_3754	NA	unknown function
UHGV-0078708_58	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0078708_59	PHROG	phrog_21718	NA	unknown function
UHGV-0078708_59	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0078708_60	PHROG	phrog_22984	NA	unknown function
UHGV-0078708_61	PHROG	phrog_16490	NA	unknown function
UHGV-0078708_61	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-0078708_62	PHROG	phrog_20016	NA	unknown function
UHGV-0078708_62	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0078708_62	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0078708_62	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0078708_63	PHROG	phrog_28802	NA	unknown function
UHGV-0078708_63	Structural annotation	PF12510	NA	NA
UHGV-0078708_64	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA