UHGV-0078770

Genome information

Genome length 49,106 bps

CDS count 81

Completeness 89.61% (medium-quality)

geNomad score 0.9778

Prediction confidence Confident

Genome information
Genome ID	UHGV-0078770
vOTU ID	vOTU-036308
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_151204
BioSample	SAMEA2784469
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.61% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9778
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	56.35
Jumbo phage	No

Genome content
Genome length	49,106 bps
GC content	28.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	81
CDS density	92.51%
Average CDS length	563.04 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0078770_4	Pfam	PF19474	NA	DUF6011
UHGV-0078770_4	Structural annotation	PF19474	NA	NA
UHGV-0078770_5	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0078770_5	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0078770_5	UniRef90	UniRef90_UPI001D09FC33	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0078770_5	eggNOG-mapper	1449126.JQKL01000044_gene1987	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-0078770_5	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0078770_5	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0078770_5	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0078770_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0078770_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0078770_6	UniRef90	UniRef90_UPI001B31FE1A	helix-turn-helix domain-containing protein	NA
UHGV-0078770_6	eggNOG-mapper	1232436.CAPF01000061_gene1261	DNA-binding helix-turn-helix protein	NA
UHGV-0078770_6	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0078770_6	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0078770_6	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0078770_8	PHROG	phrog_22292	NA	unknown function
UHGV-0078770_13	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0078770_13	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0078770_13	UniRef90	UniRef90_R6XV26	Phage terminase	NA
UHGV-0078770_13	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0078770_13	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0078770_13	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0078770_13	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0078770_13	COG	COG1783	Phage terminase large subunit	NA
UHGV-0078770_13	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0078770_14	PHROG	phrog_1233	NA	unknown function
UHGV-0078770_14	eggNOG-mapper	1415774.U728_832	NA	NA
UHGV-0078770_14	Structural annotation	PF13058	NA	NA
UHGV-0078770_15	PHROG	phrog_19695	NA	unknown function
UHGV-0078770_15	eggNOG-mapper	478749.BRYFOR_08558	NA	NA
UHGV-0078770_15	Structural annotation	PF19714	NA	NA
UHGV-0078770_16	PHROG	phrog_6782	tail fiber protein	tail
UHGV-0078770_16	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-0078770_16	Structural annotation	PF10651	NA	NA
UHGV-0078770_18	PHROG	phrog_533	portal protein	head and packaging
UHGV-0078770_18	UniRef90	UniRef90_A0A6L5T8J5	Phage portal protein	NA
UHGV-0078770_18	eggNOG-mapper	545697.HMPREF0216_02845	NA	NA
UHGV-0078770_18	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0078770_19	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0078770_19	UniRef90	UniRef90_A0A136WBX5	Phage minor capsid protein 2	NA
UHGV-0078770_19	eggNOG-mapper	1449050.JNLE01000003_gene3892	Phage minor capsid protein 2	NA
UHGV-0078770_19	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0078770_19	COG	COG2369	NA	NA
UHGV-0078770_19	Structural annotation	PF06152	NA	NA
UHGV-0078770_20	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0078770_20	UniRef90	UniRef90_UPI00195B7610	phage scaffolding protein	NA
UHGV-0078770_20	eggNOG-mapper	663278.Ethha_0093	NA	NA
UHGV-0078770_20	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0078770_20	Structural annotation	PF06810	NA	NA
UHGV-0078770_21	UniRef90	UniRef90_A0A0M2NI16	S-l_SbsC_C domain-containing protein	NA
UHGV-0078770_21	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0078770_24	PHROG	phrog_3366	NA	unknown function
UHGV-0078770_24	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0078770_25	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0078770_25	UniRef90	UniRef90_UPI000930E2B9	minor capsid protein	NA
UHGV-0078770_25	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0078770_25	Structural annotation	PF11114	NA	NA
UHGV-0078770_26	PHROG	phrog_3266	tail completion	connector
UHGV-0078770_26	eggNOG-mapper	1292035.H476_1010	NA	NA
UHGV-0078770_26	Structural annotation	PF12691	NA	NA
UHGV-0078770_27	PHROG	phrog_3099	NA	unknown function
UHGV-0078770_27	eggNOG-mapper	1125725.HMPREF1325_1337	NA	NA
UHGV-0078770_27	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0078770_28	Structural annotation	PF20378	NA	NA
UHGV-0078770_29	PHROG	phrog_706	NA	unknown function
UHGV-0078770_29	UniRef90	UniRef90_UPI001655B79C	Gp15 family bacteriophage protein	NA
UHGV-0078770_29	eggNOG-mapper	641112.ACOK01000073_gene2903	Bacteriophage Gp15 protein	NA
UHGV-0078770_29	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0078770_29	Structural annotation	PF06854	NA	NA
UHGV-0078770_30	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0078770_30	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0078770_30	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0078770_31	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0078770_31	UniRef90	UniRef90_A0A1C5VV34	Phage-related protein	NA
UHGV-0078770_31	eggNOG-mapper	1321782.HMPREF1986_02277	PFAM Phage tail protein	NA
UHGV-0078770_31	COG	COG4722	Phage-related protein YomH	NA
UHGV-0078770_31	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0078770_32	PHROG	phrog_538	minor tail protein	tail
UHGV-0078770_32	UniRef90	UniRef90_A0A8J6IQQ3	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0078770_32	eggNOG-mapper	1321782.HMPREF1986_02278	NA	NA
UHGV-0078770_32	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0078770_32	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0078770_33	PHROG	phrog_1220	head protein	head and packaging
UHGV-0078770_33	UniRef90	UniRef90_R6SMG3	Conserved domain protein	NA
UHGV-0078770_33	eggNOG-mapper	411470.RUMGNA_02079	COG NOG18825 non supervised orthologous group	NA
UHGV-0078770_33	Structural annotation	PF20747	NA	NA
UHGV-0078770_34	eggNOG-mapper	742733.HMPREF9469_01798	NA	NA
UHGV-0078770_35	Structural annotation	PF14545, MF_04106	NA	NA
UHGV-0078770_36	PHROG	phrog_1129	holin	lysis
UHGV-0078770_36	eggNOG-mapper	33035.JPJF01000043_gene995	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0078770_36	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0078770_36	Structural annotation	PF06946	NA	NA
UHGV-0078770_37	PHROG	phrog_14030	NA	unknown function
UHGV-0078770_37	UniRef90	UniRef90_A0A2A7MEX2	Autolytic lysozyme	NA
UHGV-0078770_37	eggNOG-mapper	641107.CDLVIII_3774	Bacteriophage peptidoglycan hydrolase	NA
UHGV-0078770_37	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0078770_37	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0078770_37	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0078770_37	Structural annotation	PF05382, PF01471, NF038080, NF033742, COG3409, COG1388	NA	NA
UHGV-0078770_39	UniRef90	UniRef90_A0A843HPX3	Sigma-70 family RNA polymerase sigma factor	NA
UHGV-0078770_39	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-0078770_40	PHROG	phrog_21718	NA	unknown function
UHGV-0078770_40	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0078770_42	PHROG	phrog_16490	NA	unknown function
UHGV-0078770_42	eggNOG-mapper	641112.ACOK01000103_gene525	NA	NA
UHGV-0078770_43	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0078770_47	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0078770_47	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0078770_47	UniRef90	UniRef90_D9ZNF7	Putative helicase	NA
UHGV-0078770_47	eggNOG-mapper	871584.D9ZNF7_9CAUD	helicase activity	NA
UHGV-0078770_47	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0078770_47	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0078770_47	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0078770_47	Structural annotation	PF00176, PF00271, PF07443, MF_01821, NF041790, TIGR01158, COG0553	NA	NA
UHGV-0078770_48	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0078770_49	PHROG	phrog_34398	NA	unknown function
UHGV-0078770_50	Structural annotation	PF05777, MF_01186, COG2980	NA	NA
UHGV-0078770_51	PHROG	phrog_6969	NA	unknown function
UHGV-0078770_51	eggNOG-mapper	1232446.BAIE02000002_gene816	NA	NA
UHGV-0078770_51	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0078770_51	Structural annotation	PF01978, MF_01819, TIGR01610, COG5625	NA	NA
UHGV-0078770_52	Structural annotation	PF06163, TIGR00738, COG3388	NA	NA
UHGV-0078770_53	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0078770_53	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0078770_53	UniRef90	UniRef90_A0A7X8JSS1	ATP-binding protein	NA
UHGV-0078770_53	eggNOG-mapper	558169.AGAV01000003_gene3011	DNA replication protein	NA
UHGV-0078770_53	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0078770_53	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0078770_55	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0078770_55	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0078770_55	UniRef90	UniRef90_A0A843GEY3	SF4 helicase domain-containing protein	NA
UHGV-0078770_55	eggNOG-mapper	871584.D9ZNG4_9CAUD	DNA helicase activity	NA
UHGV-0078770_55	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0078770_55	Structural annotation	PF03796, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0078770_57	Structural annotation	NF008062, COG2980	NA	NA
UHGV-0078770_59	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0078770_59	PHROG	phrog_47	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0078770_59	UniRef90	UniRef90_A0A7X7EMQ9	Toprim domain-containing protein	NA
UHGV-0078770_59	eggNOG-mapper	871584.D9ZNG6_9CAUD	Toprim-like	NA
UHGV-0078770_59	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0078770_59	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0078770_59	Structural annotation	PF13155, PF01807, PF08275, MF_00974, TIGR01391, COG0358	NA	NA
UHGV-0078770_61	PHROG	phrog_14578	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0078770_61	eggNOG-mapper	871584.D9ZNH2_9CAUD	NA	NA
UHGV-0078770_61	Structural annotation	PF08804, MF_04152	NA	NA
UHGV-0078770_62	PHROG	phrog_3489	NA	unknown function
UHGV-0078770_63	KOfam	K02335	polA; DNA polymerase I [EC:2.7.7.7]	NA
UHGV-0078770_63	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0078770_63	UniRef90	UniRef90_A0A843GIK1	DNA-directed DNA polymerase	NA
UHGV-0078770_63	eggNOG-mapper	871584.D9ZNH3_9CAUD	DNA polymerase family A	NA
UHGV-0078770_63	PADLOC	drt-cluster58	DRT	DRT
UHGV-0078770_63	Pfam	PF01612	3'-5' exonuclease	DNA_pol_A_exo1
UHGV-0078770_63	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0078770_63	Structural annotation	PF00476, PF01612, MF_04101, NF004397, COG0749	NA	NA
UHGV-0078770_64	KOfam	K15256	cmoA; tRNA (cmo5U34)-methyltransferase [EC:2.1.1.-]	NA
UHGV-0078770_64	PHROG	phrog_4752	tRNA methyltransferase	other
UHGV-0078770_64	UniRef90	UniRef90_A0A414SKL3	Methyltransferase domain-containing protein	NA
UHGV-0078770_64	eggNOG-mapper	1226322.HMPREF1545_03542	trans-aconitate 2-methyltransferase activity	NA
UHGV-0078770_64	Pfam	PF13649	Methyltransferase domain	Methyltransf_25
UHGV-0078770_64	COG	COG4106	Trans-aconitate methyltransferase	NA
UHGV-0078770_64	Structural annotation	PF01209, MF_01589, TIGR00740, COG2226	NA	NA
UHGV-0078770_65	KOfam	K01953	asnB, ASNS; asparagine synthase (glutamine-hydrolysing) [EC:6.3.5.4]	NA
UHGV-0078770_65	PHROG	phrog_26038	NA	unknown function
UHGV-0078770_65	UniRef90	UniRef90_A0A2N5IBQ5	Asparagine synthetase domain-containing protein	NA
UHGV-0078770_65	Pfam	PF00733	Asparagine synthase	Asn_synthase
UHGV-0078770_66	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0078770_66	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0078770_66	UniRef90	UniRef90_UPI0011A94CDF	DNA cytosine methyltransferase	NA
UHGV-0078770_66	eggNOG-mapper	10736.A0A1P8CX13_BPPHT	C-5 cytosine-specific DNA methylase	NA
UHGV-0078770_66	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0078770_66	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0078770_66	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0078770_66	Structural annotation	PF00145, MF_01011, TIGR00675, COG0270	NA	NA
UHGV-0078770_67	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-0078770_67	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-0078770_67	UniRef90	UniRef90_A0A7C6S6U3	DNA polymerase III subunit beta	NA
UHGV-0078770_67	eggNOG-mapper	871584.D9ZNH7_9CAUD	3'-5' exonuclease activity	NA
UHGV-0078770_67	Pfam	PF00712	DNA polymerase III beta subunit, N-terminal domain	DNA_pol3_beta
UHGV-0078770_67	Structural annotation	PF00712, PF02768, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-0078770_71	PHROG	phrog_1706	CRISPR/Cas system associated	DNA, RNA and nucleotide metabolism
UHGV-0078770_71	eggNOG-mapper	871584.D9ZNH8_9CAUD	nuclease activity	NA
UHGV-0078770_71	Structural annotation	PF10926, MF_03030, TIGR00372, COG5377	NA	NA
UHGV-0078770_72	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0078770_72	UniRef90	UniRef90_K9RSM4	Holliday junction resolvasome, endonuclease subunit	NA
UHGV-0078770_72	eggNOG-mapper	195253.Syn6312_0894	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group	NA
UHGV-0078770_72	COG	COG0817	Holliday junction resolvasome RuvABC endonuclease subunit RuvC	NA
UHGV-0078770_72	Structural annotation	PF16921, MF_00034, NF000711, COG0817	NA	NA
UHGV-0078770_75	KOfam	K03553	recA; recombination protein RecA	NA
UHGV-0078770_75	PHROG	phrog_97	UvsX-like recombinase	other
UHGV-0078770_75	UniRef90	UniRef90_A0A843GH78	RECA_3 domain-containing protein	NA
UHGV-0078770_75	eggNOG-mapper	59241.E7DN79_BPDP1	DNA-dependent ATPase activity	NA
UHGV-0078770_75	Pfam	PF00154	recA bacterial DNA recombination protein	RecA
UHGV-0078770_75	Structural annotation	PF00154, MF_00268, TIGR02012, COG0468	NA	NA
UHGV-0078770_78	PHROG	phrog_25027	NA	unknown function
UHGV-0078770_78	UniRef90	UniRef90_U3PBI8	ArdcN domain-containing protein	NA
UHGV-0078770_78	eggNOG-mapper	1399942.U3PBI8_9CAUD	NA	NA
UHGV-0078770_78	Pfam	PF08401	N-terminal domain of anti-restriction factor ArdC	ArdcN
UHGV-0078770_81	PHROG	phrog_2002	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0078770_81	eggNOG-mapper	59241.E7DN89_BPDP1	NA	NA
UHGV-0078770_81	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA