UHGV-0078824

Genome information

vOTU vOTU-020015

Genome length 23,789 bps

CDS count 28

Completeness 60.86% (medium-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-0078824
vOTU ID	vOTU-020015
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_142492
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.86% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.98
Jumbo phage	No

Genome content
Genome length	23,789 bps
GC content	42.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	28
CDS density	93.94%
Average CDS length	801.43 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0078824_1	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0078824_1	PHROG	phrog_10250	NA	unknown function
UHGV-0078824_1	UniRef90	UniRef90_A0A415L5G2	Terminase	NA
UHGV-0078824_1	eggNOG-mapper	742740.HMPREF9474_03500	Phage terminase, large subunit, PBSX family	NA
UHGV-0078824_1	COG	COG1783	Phage terminase large subunit	NA
UHGV-0078824_1	Structural annotation	PF17289, MF_04148, TIGR01547, COG5323	NA	NA
UHGV-0078824_2	PHROG	phrog_533	portal protein	head and packaging
UHGV-0078824_2	UniRef90	UniRef90_UPI0015D37DA7	capsid protein	NA
UHGV-0078824_2	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0078824_2	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0078824_3	PHROG	phrog_25639	NA	unknown function
UHGV-0078824_3	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-0078824_4	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0078824_4	UniRef90	UniRef90_A0A6L8XUH4	Minor capsid protein	NA
UHGV-0078824_4	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0078824_4	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0078824_4	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0078824_4	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0078824_4	Structural annotation	PF06152, PF03496, MF_04139, NF040688	NA	NA
UHGV-0078824_6	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0078824_6	UniRef90	UniRef90_UPI000E473058	NA	NA
UHGV-0078824_6	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0078824_6	Structural annotation	PF14359	NA	NA
UHGV-0078824_7	PHROG	phrog_1048	NA	unknown function
UHGV-0078824_7	UniRef90	UniRef90_A0A396MNX1	NA	NA
UHGV-0078824_7	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0078824_7	Pfam	PF11195	NA	DUF2829
UHGV-0078824_7	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0078824_7	Structural annotation	PF11195	NA	NA
UHGV-0078824_9	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0078824_9	eggNOG-mapper	1298920.KI911353_gene4851	NA	NA
UHGV-0078824_10	PHROG	phrog_422	major head protein	head and packaging
UHGV-0078824_10	UniRef90	UniRef90_A0A414EG86	Phage capsid protein	NA
UHGV-0078824_10	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0078824_10	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0078824_11	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0078824_11	eggNOG-mapper	742740.HMPREF9474_03507	NA	NA
UHGV-0078824_12	PHROG	phrog_8710	NA	unknown function
UHGV-0078824_12	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0078824_12	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0078824_13	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0078824_13	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0078824_14	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0078824_14	UniRef90	UniRef90_UPI001C0EB705	minor capsid protein	NA
UHGV-0078824_14	eggNOG-mapper	1123263.AUKY01000051_gene1075	NA	NA
UHGV-0078824_14	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0078824_14	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0078824_15	PHROG	phrog_820	major tail protein	tail
UHGV-0078824_15	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-0078824_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0078824_16	PHROG	phrog_8300	NA	unknown function
UHGV-0078824_16	eggNOG-mapper	742740.HMPREF9474_03512	NA	NA
UHGV-0078824_16	Structural annotation	PF06854	NA	NA
UHGV-0078824_17	PHROG	phrog_8355	NA	unknown function
UHGV-0078824_17	UniRef90	UniRef90_UPI001F2CFAB2	bacteriophage Gp15 family protein	NA
UHGV-0078824_17	eggNOG-mapper	483218.BACPEC_01147	Bacteriophage Gp15 protein	NA
UHGV-0078824_18	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0078824_18	UniRef90	UniRef90_A0A1C5PIN9	Phage-related protein	NA
UHGV-0078824_18	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0078824_18	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0078824_18	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0078824_19	PHROG	phrog_1194	NA	unknown function
UHGV-0078824_19	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0078824_19	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0078824_20	PHROG	phrog_2566	NA	unknown function
UHGV-0078824_20	eggNOG-mapper	543734.LCABL_09980	NA	NA
UHGV-0078824_21	PHROG	phrog_1401	NA	unknown function
UHGV-0078824_21	UniRef90	UniRef90_UPI001E3A7391	NA	NA
UHGV-0078824_21	eggNOG-mapper	1232453.BAIF02000058_gene1640	NA	NA
UHGV-0078824_21	Structural annotation	PF07761	NA	NA
UHGV-0078824_22	PHROG	phrog_6616	tail protein	tail
UHGV-0078824_22	UniRef90	UniRef90_A5ZPK6	Phage minor structural protein, N-terminal domain protein	NA
UHGV-0078824_22	eggNOG-mapper	411459.RUMOBE_00923	NA	NA
UHGV-0078824_22	COG	COG4926	Phage-related protein	NA
UHGV-0078824_22	Structural annotation	PF05113, PF02010, NF033848, NF011764, COG3500	NA	NA
UHGV-0078824_23	UniRef90	UniRef90_UPI001EE002C0	pyocin knob domain-containing protein	NA
UHGV-0078824_23	eggNOG-mapper	411459.RUMOBE_04220	Histidine kinase	NA
UHGV-0078824_23	COG	COG0642	Signal transduction histidine kinase	NA
UHGV-0078824_24	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0078824_24	PHROG	phrog_1	integrase	integration and excision
UHGV-0078824_24	UniRef90	UniRef90_A0A6L8Y1E4	Tyrosine-type recombinase/integrase	NA
UHGV-0078824_24	eggNOG-mapper	411459.RUMOBE_00920	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0078824_24	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0078824_24	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0078824_24	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0078824_24	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0078824_25	PHROG	phrog_9886	NA	unknown function
UHGV-0078824_25	UniRef90	UniRef90_A0A6L8XQA2	Peptidase S74 domain-containing protein	NA
UHGV-0078824_25	eggNOG-mapper	1123075.AUDP01000020_gene1524	Prophage endopeptidase tail	NA
UHGV-0078824_25	COG	COG4926	Phage-related protein	NA
UHGV-0078824_25	Structural annotation	PF03944	NA	NA
UHGV-0078824_26	PHROG	phrog_4105	NA	unknown function
UHGV-0078824_26	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0078824_27	PHROG	phrog_1129	holin	lysis
UHGV-0078824_27	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-0078824_27	eggNOG-mapper	1121115.AXVN01000006_gene2171	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0078824_27	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0078824_27	Structural annotation	PF16079	NA	NA
UHGV-0078824_28	KOfam	K21473	ripA; peptidoglycan DL-endopeptidase RipA [EC:3.4.-.-]	NA
UHGV-0078824_28	PHROG	phrog_14030	NA	unknown function
UHGV-0078824_28	UniRef90	UniRef90_C6JAY8	NlpC/P60 domain-containing protein	NA
UHGV-0078824_28	eggNOG-mapper	411459.RUMOBE_01085	NA	NA
UHGV-0078824_28	Pfam	PF00877	NlpC/P60 family	NLPC_P60