UHGV-0078862

Genome information

Genome length 24,143 bps

CDS count 31

Completeness 60.89% (medium-quality)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-0078862
vOTU ID	vOTU-016884
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_167512
BioSample	SAMEA3136686
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.89% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.39
Jumbo phage	No

Genome content
Genome length	24,143 bps
GC content	45.57%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	31
CDS density	92.15%
Average CDS length	719.81 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0078862_1	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0078862_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0078862_1	UniRef90	UniRef90_A0A6L8Y1E4	Tyrosine-type recombinase/integrase	NA
UHGV-0078862_1	eggNOG-mapper	411459.RUMOBE_00920	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0078862_1	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0078862_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0078862_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0078862_1	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0078862_2	COG	COG0642	Signal transduction histidine kinase	NA
UHGV-0078862_3	PHROG	phrog_6616	tail protein	tail
UHGV-0078862_3	UniRef90	UniRef90_UPI001C10B551	tail fiber domain-containing protein	NA
UHGV-0078862_3	eggNOG-mapper	411459.RUMOBE_00923	NA	NA
UHGV-0078862_3	Pfam	PF11839	Alanine-zipper, major outer membrane lipoprotein	Alanine_zipper
UHGV-0078862_3	COG	COG4926	Phage-related protein	NA
UHGV-0078862_3	Structural annotation	PF05113, PF02010, NF033848, NF011764, COG3500	NA	NA
UHGV-0078862_4	PHROG	phrog_1401	NA	unknown function
UHGV-0078862_4	UniRef90	UniRef90_A0A7C6P910	NA	NA
UHGV-0078862_4	eggNOG-mapper	1232453.BAIF02000058_gene1640	NA	NA
UHGV-0078862_4	Structural annotation	PF07761	NA	NA
UHGV-0078862_5	PHROG	phrog_2566	NA	unknown function
UHGV-0078862_5	eggNOG-mapper	1294142.CINTURNW_1040	NA	NA
UHGV-0078862_6	PHROG	phrog_1194	NA	unknown function
UHGV-0078862_6	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0078862_6	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0078862_7	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0078862_7	UniRef90	UniRef90_A0A1C5PIN9	Phage-related protein	NA
UHGV-0078862_7	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0078862_7	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0078862_7	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0078862_8	PHROG	phrog_8355	NA	unknown function
UHGV-0078862_8	UniRef90	UniRef90_UPI000E5D9789	Gp15 family bacteriophage protein	NA
UHGV-0078862_8	eggNOG-mapper	33035.JPJF01000093_gene2244	NA	NA
UHGV-0078862_9	PHROG	phrog_8300	NA	unknown function
UHGV-0078862_9	eggNOG-mapper	742740.HMPREF9474_03512	NA	NA
UHGV-0078862_9	Structural annotation	PF06854	NA	NA
UHGV-0078862_10	PHROG	phrog_820	major tail protein	tail
UHGV-0078862_10	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-0078862_10	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0078862_11	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0078862_11	UniRef90	UniRef90_UPI001C0EB705	minor capsid protein	NA
UHGV-0078862_11	eggNOG-mapper	483218.BACPEC_01150	NA	NA
UHGV-0078862_11	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0078862_11	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0078862_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0078862_12	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0078862_13	PHROG	phrog_8710	NA	unknown function
UHGV-0078862_13	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0078862_13	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0078862_14	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0078862_14	eggNOG-mapper	1304866.K413DRAFT_0783	NA	NA
UHGV-0078862_15	PHROG	phrog_422	major head protein	head and packaging
UHGV-0078862_15	UniRef90	UniRef90_A0A414W378	Phage capsid protein	NA
UHGV-0078862_15	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0078862_15	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0078862_16	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0078862_16	eggNOG-mapper	483218.BACPEC_01156	NA	NA
UHGV-0078862_18	PHROG	phrog_918	NA	unknown function
UHGV-0078862_18	UniRef90	UniRef90_UPI00115A7D93	NA	NA
UHGV-0078862_18	eggNOG-mapper	632112.C1KFI4_9CAUD	NA	NA
UHGV-0078862_18	Pfam	PF19791	NA	DUF6275
UHGV-0078862_18	Structural annotation	PF19791	NA	NA
UHGV-0078862_19	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0078862_19	UniRef90	UniRef90_UPI0009303339	putative zinc-binding metallopeptidase	NA
UHGV-0078862_19	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0078862_19	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0078862_19	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0078862_19	Structural annotation	PF06152, PF21814	NA	NA
UHGV-0078862_20	PHROG	phrog_533	portal protein	head and packaging
UHGV-0078862_20	UniRef90	UniRef90_A0A1C5PI86	Phage portal protein, putative, A118 family	NA
UHGV-0078862_20	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0078862_20	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0078862_21	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0078862_21	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0078862_21	UniRef90	UniRef90_A0A415L5G2	Terminase	NA
UHGV-0078862_21	eggNOG-mapper	1304866.K413DRAFT_0811	Phage terminase, large subunit, PBSX family	NA
UHGV-0078862_21	COG	COG1783	Phage terminase large subunit	NA
UHGV-0078862_21	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0078862_22	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0078862_22	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0078862_22	UniRef90	UniRef90_A0A1C5PI61	Terminase small subunit	NA
UHGV-0078862_22	eggNOG-mapper	1298920.KI911353_gene4857	Terminase small subunit	NA
UHGV-0078862_22	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0078862_22	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0078862_22	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0078862_24	PHROG	phrog_1914	NA	unknown function
UHGV-0078862_24	UniRef90	UniRef90_A0A414EG94	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0078862_24	eggNOG-mapper	1280694.AUJQ01000012_gene1843	NA	NA
UHGV-0078862_24	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0078862_24	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0078862_24	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0078862_25	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0078862_25	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0078862_25	UniRef90	UniRef90_A0A1G5F392	Helix-turn-helix	NA
UHGV-0078862_25	eggNOG-mapper	1280694.AUJQ01000012_gene1844	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0078862_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0078862_25	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0078862_25	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0078862_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0078862_26	UniRef90	UniRef90_UPI001D089637	NA	NA
UHGV-0078862_26	eggNOG-mapper	33035.JPJF01000139_gene3002	NA	NA
UHGV-0078862_26	Structural annotation	PF04545	NA	NA
UHGV-0078862_27	KOfam	K04087	hflC; modulator of FtsH protease HflC	NA
UHGV-0078862_27	PHROG	phrog_200	lipoprotein	other
UHGV-0078862_27	UniRef90	UniRef90_A0A416QWZ0	Prohibitin family protein	NA
UHGV-0078862_27	eggNOG-mapper	537007.BLAHAN_05484	prohibitin homologues	NA
UHGV-0078862_27	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0078862_27	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0078862_27	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-0078862_30	PHROG	phrog_10714	NA	unknown function