UHGV-0078884

Genome information

Genome length 34,107 bps

CDS count 66

Completeness 60.50% (medium-quality)

geNomad score 0.9656

Prediction confidence Confident

Genome information
Genome ID	UHGV-0078884
vOTU ID	vOTU-025900
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_151222
BioSample	SAMEA2784469
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.50% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9656
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.12
Jumbo phage	No

Genome content
Genome length	34,107 bps
GC content	37.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	84.83%
Average CDS length	440.50 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0078884_1	eggNOG-mapper	1121098.HMPREF1534_01593	NA	NA
UHGV-0078884_1	Structural annotation	PF14173, NF040673	NA	NA
UHGV-0078884_2	UniRef90	UniRef90_R9H6K6	Bro-N domain-containing protein	NA
UHGV-0078884_2	eggNOG-mapper	1123008.KB905696_gene2846	Virulence protein RhuM family	NA
UHGV-0078884_2	Pfam	PF13310	Virulence protein RhuM family	Virulence_RhuM
UHGV-0078884_2	COG	COG3943	NA	NA
UHGV-0078884_2	Structural annotation	PF13310, TIGR02681, COG3943	NA	NA
UHGV-0078884_3	PHROG	phrog_2384	NA	unknown function
UHGV-0078884_3	UniRef90	UniRef90_A0A397FQZ1	p63C domain protein	NA
UHGV-0078884_3	eggNOG-mapper	397287.C807_00300	DDE superfamily endonuclease	NA
UHGV-0078884_3	COG	COG3385	IS4 transposase InsG	NA
UHGV-0078884_4	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0078884_4	PHROG	phrog_8036	NA	unknown function
UHGV-0078884_4	UniRef90	UniRef90_A0A0F5JGS9	Bro-N domain-containing protein	NA
UHGV-0078884_4	eggNOG-mapper	1122931.AUAE01000026_gene2517	BRO family, N-terminal domain	NA
UHGV-0078884_4	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-0078884_4	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0078884_6	UniRef90	UniRef90_UPI000B3902C0	helix-turn-helix domain-containing protein	NA
UHGV-0078884_6	eggNOG-mapper	1123058.KB894217_gene645	Transcriptional regulator	NA
UHGV-0078884_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0078884_6	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0078884_7	eggNOG-mapper	357276.EL88_11570	NA	NA
UHGV-0078884_12	PHROG	phrog_21613	NA	unknown function
UHGV-0078884_12	eggNOG-mapper	1120998.AUFC01000030_gene2214	NA	NA
UHGV-0078884_13	PHROG	phrog_5715	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0078884_13	eggNOG-mapper	1300143.CCAV010000006_gene4342	NA	NA
UHGV-0078884_13	Structural annotation	PF09588, TIGR03033, COG5377	NA	NA
UHGV-0078884_14	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0078884_14	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0078884_14	UniRef90	UniRef90_UPI000D8D1D9C	single-stranded DNA-binding protein	NA
UHGV-0078884_14	eggNOG-mapper	926569.ANT_21880	single-stranded DNA binding	NA
UHGV-0078884_14	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0078884_14	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0078884_14	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0078884_16	PHROG	phrog_319	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0078884_16	UniRef90	UniRef90_UPI000D8884BC	NA	NA
UHGV-0078884_16	eggNOG-mapper	742767.HMPREF9456_02058	NA	NA
UHGV-0078884_16	Pfam	PF07105	NA	DUF1367
UHGV-0078884_16	Structural annotation	PF07105	NA	NA
UHGV-0078884_19	PHROG	phrog_19572	NA	unknown function
UHGV-0078884_19	UniRef90	UniRef90_A0A412WQ50	NA	NA
UHGV-0078884_19	eggNOG-mapper	709991.Odosp_1960	Phage tail protein	NA
UHGV-0078884_19	Pfam	PF14902	NA	DUF4494
UHGV-0078884_19	Structural annotation	PF14902	NA	NA
UHGV-0078884_20	PHROG	phrog_11581	NA	unknown function
UHGV-0078884_20	eggNOG-mapper	457424.BFAG_02391	NA	NA
UHGV-0078884_21	PHROG	phrog_11581	NA	unknown function
UHGV-0078884_21	eggNOG-mapper	1506583.JQJY01000003_gene3423	NA	NA
UHGV-0078884_22	PHROG	phrog_19665	NA	unknown function
UHGV-0078884_22	eggNOG-mapper	357276.EL88_12845	NA	NA
UHGV-0078884_23	KOfam	K21038	brt; reverse transcriptase [EC:2.7.7.49]	NA
UHGV-0078884_23	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0078884_23	UniRef90	UniRef90_UPI000D8FCB0A	reverse transcriptase domain-containing protein	NA
UHGV-0078884_23	eggNOG-mapper	457424.BFAG_02440	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0078884_23	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0078884_23	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0078884_23	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0078884_23	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0078884_25	PHROG	phrog_1374	NA	unknown function
UHGV-0078884_25	UniRef90	UniRef90_A0A2I7QPK8	Transmembrane fragile-X-F protein	NA
UHGV-0078884_25	eggNOG-mapper	1203606.HMPREF1526_01891	NA	NA
UHGV-0078884_27	PHROG	phrog_1994	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0078884_27	UniRef90	UniRef90_UPI000D937A31	MazG-like family protein	NA
UHGV-0078884_27	eggNOG-mapper	699218.HMPREF0889_0311	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0078884_27	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0078884_27	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0078884_27	Structural annotation	PF12643, MF_01020, NF001613, COG0140	NA	NA
UHGV-0078884_30	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0078884_30	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0078884_30	UniRef90	UniRef90_UPI000B379167	HNH endonuclease	NA
UHGV-0078884_30	eggNOG-mapper	700598.Niako_6184	HNH nucleases	NA
UHGV-0078884_30	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0078884_30	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0078884_31	PHROG	phrog_16706	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0078884_31	UniRef90	UniRef90_UPI0019D0D939	NA	NA
UHGV-0078884_31	eggNOG-mapper	435590.BVU_2853	NA	NA
UHGV-0078884_31	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0078884_31	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0078884_31	Structural annotation	PF14297	NA	NA
UHGV-0078884_32	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0078884_32	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0078884_32	UniRef90	UniRef90_UPI000B38F3BC	replicative DNA helicase	NA
UHGV-0078884_32	eggNOG-mapper	1408473.JHXO01000006_gene1076	Participates in initiation and elongation during chromosome replication	NA
UHGV-0078884_32	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0078884_32	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0078884_32	NCBIFam	TIGR00665.1	replicative DNA helicase	NA
UHGV-0078884_32	COG	COG0305	Replicative DNA helicase	NA
UHGV-0078884_32	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0078884_33	eggNOG-mapper	357276.EL88_11460	NA	NA
UHGV-0078884_35	PHROG	phrog_8684	NA	unknown function
UHGV-0078884_35	UniRef90	UniRef90_UPI000B3983BA	YopX family protein	NA
UHGV-0078884_35	eggNOG-mapper	411473.RUMCAL_00280	YopX protein	NA
UHGV-0078884_35	Pfam	PF09643	YopX protein	YopX
UHGV-0078884_35	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0078884_37	PHROG	phrog_37478	NA	unknown function
UHGV-0078884_41	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0078884_41	PHROG	phrog_15286	NA	unknown function
UHGV-0078884_41	UniRef90	UniRef90_A0A412WPZ6	KilA-N domain-containing protein	NA
UHGV-0078884_41	eggNOG-mapper	1185876.BN8_03693	KilA-N	NA
UHGV-0078884_41	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-0078884_41	COG	COG5380	Lipase chaperone LimK	NA
UHGV-0078884_43	PHROG	phrog_874	NA	unknown function
UHGV-0078884_43	eggNOG-mapper	762968.HMPREF9441_00541	NA	NA
UHGV-0078884_43	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0078884_46	PHROG	phrog_2776	NA	unknown function
UHGV-0078884_46	UniRef90	UniRef90_UPI001297AEBA	MmcB family DNA repair protein	NA
UHGV-0078884_46	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0078884_47	UniRef90	UniRef90_UPI000D9B2012	NA	NA
UHGV-0078884_47	Pfam	PF04448	NA	DUF551
UHGV-0078884_48	eggNOG-mapper	411901.BACCAC_01173	NA	NA
UHGV-0078884_51	PHROG	phrog_5783	NA	unknown function
UHGV-0078884_51	UniRef90	UniRef90_UPI000DDA9308	NYN domain-containing protein	NA
UHGV-0078884_51	eggNOG-mapper	702438.HMPREF9431_02012	NYN domain	NA
UHGV-0078884_51	Pfam	PF01936	NYN domain	NYN
UHGV-0078884_51	COG	COG1432	NYN domain, predicted PIN-related RNAse, tRNA/rRNA maturation	NA
UHGV-0078884_51	Structural annotation	PF01936, TIGR00288, COG1432	NA	NA
UHGV-0078884_53	UniRef90	UniRef90_F3QSP6	Conserved domain protein	NA
UHGV-0078884_53	eggNOG-mapper	411901.BACCAC_01107	NA	NA
UHGV-0078884_54	PHROG	phrog_953	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0078884_54	UniRef90	UniRef90_UPI000E4F84C1	NA	NA
UHGV-0078884_54	eggNOG-mapper	424716.B1GS49_9CAUD	DNA binding	NA
UHGV-0078884_54	Pfam	PF05265	NA	DUF723
UHGV-0078884_54	Structural annotation	PF05265, PF02920	NA	NA
UHGV-0078884_55	PHROG	phrog_38431	NA	unknown function
UHGV-0078884_55	eggNOG-mapper	411901.BACCAC_01108	NA	NA
UHGV-0078884_57	PHROG	phrog_28898	NA	unknown function
UHGV-0078884_57	UniRef90	UniRef90_R5UN07	Conserved domain protein	NA
UHGV-0078884_57	eggNOG-mapper	762968.HMPREF9441_00553	NA	NA
UHGV-0078884_57	Structural annotation	PF10781	NA	NA
UHGV-0078884_58	PHROG	phrog_31654	NA	unknown function
UHGV-0078884_58	eggNOG-mapper	742725.HMPREF9450_02106	NA	NA
UHGV-0078884_59	PHROG	phrog_16490	NA	unknown function
UHGV-0078884_59	UniRef90	UniRef90_A0A7M1RZU0	Spike protein/glycoprotein	NA
UHGV-0078884_59	eggNOG-mapper	411901.BACCAC_01112	NA	NA
UHGV-0078884_60	UniRef90	UniRef90_A0A2D0A621	PEGA domain-containing protein	NA
UHGV-0078884_60	eggNOG-mapper	1121097.JCM15093_3531	NA	NA
UHGV-0078884_61	Structural annotation	PF19666	NA	NA
UHGV-0078884_64	eggNOG-mapper	1347393.HG726021_gene391	NA	NA
UHGV-0078884_65	UniRef90	UniRef90_UPI0011226A1F	phage holin family protein	NA
UHGV-0078884_65	eggNOG-mapper	1347393.HG726026_gene2534	NA	NA
UHGV-0078884_65	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0078884_65	Structural annotation	PF05105, COG4824	NA	NA
UHGV-0078884_66	PHROG	phrog_3108	NA	unknown function
UHGV-0078884_66	eggNOG-mapper	342610.Patl_3555	lytic transglycosylase activity	NA
UHGV-0078884_66	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA