UHGV-0078968

Genome information

Genome length 33,229 bps

CDS count 56

Completeness 100.00% (complete)

geNomad score 0.9809

Prediction confidence Confident

Genome information
Genome ID	UHGV-0078968
vOTU ID	vOTU-045148
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_150806
BioSample	NA
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9809
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.76
Jumbo phage	No

Genome content
Genome length	33,229 bps
GC content	54.05%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	94.93%
Average CDS length	568.34 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0078968_1	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0078968_1	PHROG	phrog_6904	NA	unknown function
UHGV-0078968_1	UniRef90	UniRef90_A0A4J1ZEQ9	Phage antirepressor protein	NA
UHGV-0078968_1	eggNOG-mapper	697284.ERIC2_c08950	AntA/AntB antirepressor	NA
UHGV-0078968_1	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0078968_1	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0078968_3	UniRef90	UniRef90_UPI001F0DEC99	XRE family transcriptional regulator	NA
UHGV-0078968_3	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0078968_4	PHROG	phrog_15404	NA	unknown function
UHGV-0078968_4	eggNOG-mapper	1211817.CCAT010000003_gene267	NA	NA
UHGV-0078968_6	Structural annotation	PF17888	NA	NA
UHGV-0078968_8	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0078968_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0078968_8	UniRef90	UniRef90_A0A3C0IJA8	HTH cro/C1-type domain-containing protein	NA
UHGV-0078968_8	eggNOG-mapper	1403946.Q615_SPAC00137G0111	transcriptional	NA
UHGV-0078968_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0078968_8	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0078968_9	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0078968_9	PHROG	phrog_95	integrase	integration and excision
UHGV-0078968_9	UniRef90	UniRef90_A0A1M6M277	Site-specific DNA recombinase	NA
UHGV-0078968_9	eggNOG-mapper	537013.CLOSTMETH_02040	NA	NA
UHGV-0078968_9	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0078968_9	Pfam	PF07508	Recombinase	Recombinase
UHGV-0078968_9	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0078968_9	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0078968_9	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0078968_11	KOfam	K07726	K07726; putative transcriptional regulator	NA
UHGV-0078968_11	PHROG	phrog_2104	NA	unknown function
UHGV-0078968_11	UniRef90	UniRef90_U2MDW3	Toxin-antitoxin system, antitoxin component, Xre domain protein	NA
UHGV-0078968_11	eggNOG-mapper	411473.RUMCAL_00116	Helix-turn-helix XRE-family like proteins	NA
UHGV-0078968_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0078968_11	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0078968_12	PHROG	phrog_6160	NA	unknown function
UHGV-0078968_12	UniRef90	UniRef90_E9LMI3	Fertility inhibition protein FinQ	NA
UHGV-0078968_12	eggNOG-mapper	314345.SPV1_06379	NA	NA
UHGV-0078968_14	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0078968_14	PHROG	phrog_15001	endolysin	lysis
UHGV-0078968_14	UniRef90	UniRef90_UPI001D02251E	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0078968_14	eggNOG-mapper	411473.RUMCAL_03176	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0078968_14	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0078968_14	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0078968_14	Structural annotation	PF01510, NF008758, COG5632	NA	NA
UHGV-0078968_15	PHROG	phrog_21498	NA	unknown function
UHGV-0078968_15	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-0078968_15	eggNOG-mapper	1095750.HMPREF9970_2290	chromosome segregation	NA
UHGV-0078968_15	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0078968_15	Structural annotation	PF05869, TIGR01712	NA	NA
UHGV-0078968_16	PHROG	phrog_199	holin	lysis
UHGV-0078968_16	UniRef90	UniRef90_UPI001D02B647	phage holin family protein	NA
UHGV-0078968_16	eggNOG-mapper	1384066.JAGT01000001_gene921	Bacteriophage holin family	NA
UHGV-0078968_16	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0078968_16	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0078968_16	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0078968_16	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0078968_17	eggNOG-mapper	1111454.HMPREF1250_0267	NA	NA
UHGV-0078968_19	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0078968_19	UniRef90	UniRef90_R7FII5	PhageMin_Tail domain-containing protein	NA
UHGV-0078968_19	eggNOG-mapper	411473.RUMCAL_01938	tail tape measure protein, TP901	NA
UHGV-0078968_19	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0078968_19	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0078968_19	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0078968_20	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0078968_20	UniRef90	UniRef90_U2K8C2	Phage minor capsid protein 2	NA
UHGV-0078968_20	eggNOG-mapper	411473.RUMCAL_01925	NA	NA
UHGV-0078968_20	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0078968_20	COG	COG2369	NA	NA
UHGV-0078968_20	Structural annotation	PF06152	NA	NA
UHGV-0078968_21	PHROG	phrog_533	portal protein	head and packaging
UHGV-0078968_21	UniRef90	UniRef90_U2KRP5	Putative phage minor capsid protein	NA
UHGV-0078968_21	eggNOG-mapper	411473.RUMCAL_01924	NA	NA
UHGV-0078968_21	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0078968_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0078968_22	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0078968_22	UniRef90	UniRef90_A0A315Y4A8	PBSX family phage terminase large subunit	NA
UHGV-0078968_22	eggNOG-mapper	641112.ACOK01000073_gene2888	Phage terminase, large subunit, PBSX family	NA
UHGV-0078968_22	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0078968_22	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0078968_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-0078968_22	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0078968_23	PHROG	phrog_706	NA	unknown function
UHGV-0078968_23	UniRef90	UniRef90_UPI001C8DC2CB	Gp15 family bacteriophage protein	NA
UHGV-0078968_23	eggNOG-mapper	411473.RUMCAL_01937	Bacteriophage Gp15 protein	NA
UHGV-0078968_23	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0078968_23	Structural annotation	PF06854	NA	NA
UHGV-0078968_24	PHROG	phrog_4450	NA	unknown function
UHGV-0078968_24	eggNOG-mapper	641112.ACOK01000073_gene2902	NA	NA
UHGV-0078968_24	Pfam	PF20378	NA	DUF6673
UHGV-0078968_24	Structural annotation	PF20378	NA	NA
UHGV-0078968_25	PHROG	phrog_3099	NA	unknown function
UHGV-0078968_25	eggNOG-mapper	411473.RUMCAL_01935	NA	NA
UHGV-0078968_25	Structural annotation	PF08813, TIGR02126, COG5437	NA	NA
UHGV-0078968_26	PHROG	phrog_3266	tail completion	connector
UHGV-0078968_26	UniRef90	UniRef90_A0A355UZ60	Chloramphenicol resistance protein	NA
UHGV-0078968_26	eggNOG-mapper	411473.RUMCAL_01934	NA	NA
UHGV-0078968_26	Structural annotation	PF12691	NA	NA
UHGV-0078968_27	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0078968_27	UniRef90	UniRef90_T3DSR7	Minor capsid family protein	NA
UHGV-0078968_27	eggNOG-mapper	1151292.QEW_4532	Minor capsid protein	NA
UHGV-0078968_27	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0078968_27	Structural annotation	PF11114	NA	NA
UHGV-0078968_28	PHROG	phrog_3366	NA	unknown function
UHGV-0078968_28	eggNOG-mapper	411473.RUMCAL_01932	NA	NA
UHGV-0078968_28	Pfam	PF20536	NA	DUF6751
UHGV-0078968_28	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0078968_29	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0078968_29	eggNOG-mapper	642492.Clole_0822	NA	NA
UHGV-0078968_30	PHROG	phrog_267	major head protein	head and packaging
UHGV-0078968_30	UniRef90	UniRef90_A0A1C6GMA6	S-l_SbsC_C domain-containing protein	NA
UHGV-0078968_30	eggNOG-mapper	718252.FP2_06660	NA	NA
UHGV-0078968_30	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0078968_31	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0078968_31	UniRef90	UniRef90_R7FEY9	Phage minor structural protein GP20	NA
UHGV-0078968_31	eggNOG-mapper	411473.RUMCAL_01929	Phage minor structural protein GP20	NA
UHGV-0078968_31	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0078968_32	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0078968_32	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0078968_32	UniRef90	UniRef90_UPI0001F01BB6	terminase small subunit	NA
UHGV-0078968_32	eggNOG-mapper	1158607.UAU_05157	Terminase small subunit	NA
UHGV-0078968_32	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0078968_32	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0078968_33	Structural annotation	PF04545, MF_00674, TIGR02980, COG1595	NA	NA
UHGV-0078968_36	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0078968_36	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0078968_36	UniRef90	UniRef90_A0A173RHJ2	Restriction alleviation protein, Lar family	NA
UHGV-0078968_36	eggNOG-mapper	10704.B4UTV4_BP163	NA	NA
UHGV-0078968_36	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0078968_36	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0078968_36	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0078968_36	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0078968_37	UniRef90	UniRef90_R7GTQ1	NA	NA
UHGV-0078968_37	Pfam	PF04448	NA	DUF551
UHGV-0078968_38	Structural annotation	PF04012	NA	NA
UHGV-0078968_41	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0078968_41	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0078968_41	UniRef90	UniRef90_UPI001C012B37	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0078968_41	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0078968_41	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0078968_41	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0078968_41	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0078968_41	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0078968_42	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0078968_42	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0078968_42	UniRef90	UniRef90_A0A3D1HFF1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0078968_42	eggNOG-mapper	1127695.HMPREF9163_00374	crossover junction endodeoxyribonuclease	NA
UHGV-0078968_42	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0078968_42	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0078968_42	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0078968_43	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0078968_43	UniRef90	UniRef90_A0A318EQP1	Putative phage protein (TIGR02220 family)	NA
UHGV-0078968_43	eggNOG-mapper	665956.HMPREF1032_02617	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0078968_43	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0078968_43	Structural annotation	PF07106, MF_01177, NF041413, COG3373	NA	NA
UHGV-0078968_44	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0078968_44	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0078968_44	UniRef90	UniRef90_UPI001D0150B1	single-stranded DNA-binding protein	NA
UHGV-0078968_44	eggNOG-mapper	411473.RUMCAL_03263	Single-stranded DNA-binding protein	NA
UHGV-0078968_44	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0078968_44	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0078968_44	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0078968_44	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0078968_44	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0078968_45	PHROG	phrog_14970	NA	unknown function
UHGV-0078968_45	eggNOG-mapper	411468.CLOSCI_00315	double-strand break repair protein	NA
UHGV-0078968_45	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0078968_45	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0078968_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0078968_49	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0078968_56	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0078968_56	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0078968_56	UniRef90	UniRef90_UPI001379CF69	phage antirepressor KilAC domain-containing protein	NA
UHGV-0078968_56	eggNOG-mapper	1232443.BAIA02000079_gene53	AntA/AntB antirepressor	NA
UHGV-0078968_56	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0078968_56	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0078968_56	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0078968_56	Structural annotation	PF03374, COG3645, COG3561	NA	NA