UHGV-0078993

Genome information

Genome length 44,322 bps

CDS count 68

Completeness 99.19% (high-quality)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-0078993
vOTU ID	vOTU-013619
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_155107
BioSample	NA
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.19% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.91
Jumbo phage	No

Genome content
Genome length	44,322 bps
GC content	41.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	90.88%
Average CDS length	595.06 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0078993_1	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0078993_1	UniRef90	UniRef90_A0A415G6V0	HNH endonuclease	NA
UHGV-0078993_1	eggNOG-mapper	1536769.P40081_01050	HNH nucleases	NA
UHGV-0078993_1	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0078993_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0078993_1	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0078993_2	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0078993_2	UniRef90	UniRef90_UPI000289B8D9	transposase	NA
UHGV-0078993_2	eggNOG-mapper	1033743.CAES01000078_gene3713	transposase activity	NA
UHGV-0078993_2	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0078993_2	Structural annotation	PF07141	NA	NA
UHGV-0078993_3	KOfam	K07273	acm; lysozyme	NA
UHGV-0078993_3	PHROG	phrog_291	endolysin	lysis
UHGV-0078993_3	UniRef90	UniRef90_A0A415G6T2	Cpl-7 domain-containing protein	NA
UHGV-0078993_3	eggNOG-mapper	1235799.C818_04240	lysozyme activity	NA
UHGV-0078993_3	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0078993_3	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0078993_3	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0078993_3	Structural annotation	PF01183, PF08230, COG3757	NA	NA
UHGV-0078993_4	PHROG	phrog_1863	NA	unknown function
UHGV-0078993_4	eggNOG-mapper	768486.EHR_09640	NA	NA
UHGV-0078993_5	PHROG	phrog_443	holin	lysis
UHGV-0078993_5	UniRef90	UniRef90_UPI001BA9F6DF	holin	NA
UHGV-0078993_5	eggNOG-mapper	1235802.C823_05612	Putative lactococcus lactis phage r1t holin	NA
UHGV-0078993_5	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0078993_5	Structural annotation	PF16945	NA	NA
UHGV-0078993_6	Structural annotation	PF06530, TIGR02937, COG2739	NA	NA
UHGV-0078993_7	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0078993_7	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0078993_7	UniRef90	UniRef90_A0A259V1C2	SF3 helicase domain-containing protein	NA
UHGV-0078993_7	eggNOG-mapper	1120985.AUMI01000018_gene2908	D5 N terminal like	NA
UHGV-0078993_7	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-0078993_7	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0078993_7	Pfam	PF19263	NA	DUF5906
UHGV-0078993_7	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0078993_7	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0078993_7	Structural annotation	PF19263, PF08706, PF03288, PF09250, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-0078993_8	PHROG	phrog_16126	NA	unknown function
UHGV-0078993_10	UniRef90	UniRef90_A0A173S152	RNA_pol_Rpb1_2 domain-containing protein	NA
UHGV-0078993_10	Structural annotation	PF03412	NA	NA
UHGV-0078993_11	UniRef90	UniRef90_A0A285PN53	Phosphoglycolate phosphatase, domain 2	NA
UHGV-0078993_13	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0078993_13	UniRef90	UniRef90_A0A3P6JT15	Phage DNA polymerase	NA
UHGV-0078993_13	eggNOG-mapper	742740.HMPREF9474_02366	DNA polymerase elongation subunit (Family B)	NA
UHGV-0078993_13	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-0078993_13	Structural annotation	PF00136, MF_04100, NF004416, COG0417	NA	NA
UHGV-0078993_15	PHROG	phrog_7778	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0078993_15	UniRef90	UniRef90_A0A658K0A9	NA	NA
UHGV-0078993_15	eggNOG-mapper	1145276.T479_01570	NA	NA
UHGV-0078993_15	Pfam	PF05037	NA	DUF669
UHGV-0078993_15	Structural annotation	PF05037	NA	NA
UHGV-0078993_19	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0078993_19	UniRef90	UniRef90_UPI0007C86507	AAA family ATPase	NA
UHGV-0078993_19	eggNOG-mapper	742740.HMPREF9474_02369	AAA domain	NA
UHGV-0078993_19	Structural annotation	PF13479, TIGR01618, COG2087	NA	NA
UHGV-0078993_20	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0078993_20	UniRef90	UniRef90_UPI0016814A98	NUMOD4 domain-containing protein	NA
UHGV-0078993_20	eggNOG-mapper	1206110.L0P6F5_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0078993_20	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0078993_20	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0078993_20	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0078993_20	Structural annotation	PF07453	NA	NA
UHGV-0078993_21	PHROG	phrog_3971	NA	unknown function
UHGV-0078993_21	eggNOG-mapper	1141106.CAIB01000053_gene407	NA	NA
UHGV-0078993_21	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0078993_22	PHROG	phrog_5207	NA	unknown function
UHGV-0078993_22	eggNOG-mapper	536233.CLO_0899	NA	NA
UHGV-0078993_22	Structural annotation	PF08931	NA	NA
UHGV-0078993_23	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-0078993_23	PHROG	phrog_5889	NA	unknown function
UHGV-0078993_23	UniRef90	UniRef90_UPI0012DEC7D6	HD family phosphohydrolase	NA
UHGV-0078993_23	eggNOG-mapper	742740.HMPREF9474_02372	Metal dependent phosphohydrolases with conserved 'HD' motif.	NA
UHGV-0078993_23	Pfam	PF01966	HD domain	HD
UHGV-0078993_23	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0078993_23	Structural annotation	PF07514, MF_01427, NF010007, COG3481	NA	NA
UHGV-0078993_24	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0078993_24	UniRef90	UniRef90_A0A0D0SJT1	VRR-NUC domain-containing protein	NA
UHGV-0078993_24	eggNOG-mapper	445335.CBN_1355	VRR_NUC	NA
UHGV-0078993_24	Pfam	PF01870	Archaeal holliday junction resolvase (hjc)	Hjc
UHGV-0078993_24	Structural annotation	PF01870, MF_01490, NF002581, COG1591	NA	NA
UHGV-0078993_27	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0078993_27	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0078993_27	UniRef90	UniRef90_A0A5F0ZQS7	ATP-dependent helicase	NA
UHGV-0078993_27	eggNOG-mapper	1280692.AUJL01000009_gene2982	snf2 family	NA
UHGV-0078993_27	PADLOC	DpdE_00006	DpdE	DPD
UHGV-0078993_27	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0078993_27	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0078993_27	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0078993_27	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-0078993_28	Structural annotation	PF18129, MF_00613, NF002745, COG2139	NA	NA
UHGV-0078993_29	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0078993_30	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0078993_30	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0078993_30	UniRef90	UniRef90_UPI00100C2355	helix-turn-helix domain-containing protein	NA
UHGV-0078993_30	eggNOG-mapper	645991.Sgly_0310	PFAM Peptidase S24 S26A S26B, conserved region	NA
UHGV-0078993_30	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0078993_30	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0078993_30	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-0078993_31	KOfam	K14059	int; integrase	NA
UHGV-0078993_31	PHROG	phrog_1	integrase	integration and excision
UHGV-0078993_31	UniRef90	UniRef90_UPI001D16CEC8	site-specific integrase	NA
UHGV-0078993_31	eggNOG-mapper	558169.AGAV01000001_gene3323	Phage integrase family	NA
UHGV-0078993_31	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0078993_31	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0078993_31	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0078993_35	PHROG	phrog_25027	NA	unknown function
UHGV-0078993_35	UniRef90	UniRef90_A0A1M6FHT6	ArdcN domain-containing protein	NA
UHGV-0078993_35	eggNOG-mapper	1399942.U3PBI8_9CAUD	NA	NA
UHGV-0078993_35	Pfam	PF08401	N-terminal domain of anti-restriction factor ArdC	ArdcN
UHGV-0078993_36	PHROG	phrog_2268	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0078993_36	UniRef90	UniRef90_A0A397RZL1	Prevent-host-death family protein	NA
UHGV-0078993_36	eggNOG-mapper	138119.DSY3334	Antitoxin component of a toxin-antitoxin (TA) module	NA
UHGV-0078993_36	Pfam	PF02604	Antitoxin Phd_YefM, type II toxin-antitoxin system	PhdYeFM_antitox
UHGV-0078993_36	NCBIFam	TIGR01552.1	type II toxin-antitoxin system prevent-host-death family antitoxin	NA
UHGV-0078993_36	COG	COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	NA
UHGV-0078993_36	Structural annotation	PF02604, TIGR01552, COG2161	NA	NA
UHGV-0078993_37	KOfam	K19092	parE1_3_4; toxin ParE1/3/4	NA
UHGV-0078993_37	PHROG	phrog_2455	NA	unknown function
UHGV-0078993_37	Pfam	PF05016	ParE toxin of type II toxin-antitoxin system, parDE	ParE_toxin
UHGV-0078993_37	COG	COG3668	Plasmid stabilization system protein ParE	NA
UHGV-0078993_38	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0078993_38	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0078993_38	UniRef90	UniRef90_A0A374AXZ2	XRE family transcriptional regulator	NA
UHGV-0078993_38	eggNOG-mapper	398512.JQKC01000001_gene2272	Helix-turn-helix domain	NA
UHGV-0078993_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0078993_38	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0078993_38	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0078993_43	eggNOG-mapper	411470.RUMGNA_03785	NA	NA
UHGV-0078993_44	PHROG	phrog_1220	head protein	head and packaging
UHGV-0078993_44	eggNOG-mapper	1033738.CAEP01000018_gene3685	NA	NA
UHGV-0078993_44	Structural annotation	PF16569, PF21567	NA	NA
UHGV-0078993_45	PHROG	phrog_538	minor tail protein	tail
UHGV-0078993_45	UniRef90	UniRef90_UPI0015712F8F	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0078993_45	eggNOG-mapper	742740.HMPREF9474_02260	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0078993_45	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0078993_45	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0078993_46	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0078993_46	UniRef90	UniRef90_A0A415G8B5	Phage tail family protein	NA
UHGV-0078993_46	eggNOG-mapper	1321782.HMPREF1986_02277	PFAM Phage tail protein	NA
UHGV-0078993_46	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0078993_46	COG	COG4722	Phage-related protein YomH	NA
UHGV-0078993_46	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0078993_47	KOfam	K16808	NUMA1; nuclear mitotic apparatus protein 1	NA
UHGV-0078993_47	PHROG	phrog_5218	NA	unknown function
UHGV-0078993_47	UniRef90	UniRef90_UPI00156DBBA7	phage tail tape measure protein	NA
UHGV-0078993_47	eggNOG-mapper	999413.HMPREF1094_02001	Phage-related minor tail protein	NA
UHGV-0078993_47	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0078993_47	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0078993_49	PHROG	phrog_88	major tail protein	tail
UHGV-0078993_49	UniRef90	UniRef90_A0A843GGC8	S-l_SbsC_C domain-containing protein	NA
UHGV-0078993_49	eggNOG-mapper	1246626.BleG1_2876	phage major tail protein, phi13 family	NA
UHGV-0078993_49	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0078993_49	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0078993_50	Structural annotation	PF05657	NA	NA
UHGV-0078993_51	Structural annotation	TIGR01725	NA	NA
UHGV-0078993_52	UniRef90	UniRef90_A0A415G8B6	Head-tail adaptor protein	NA
UHGV-0078993_52	eggNOG-mapper	1536774.H70357_10645	NA	NA
UHGV-0078993_52	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0078993_53	UniRef90	UniRef90_A0A843GGX3	Phage head-tail connector protein	NA
UHGV-0078993_53	eggNOG-mapper	1536774.H70357_10640	NA	NA
UHGV-0078993_53	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0078993_54	UniRef90	UniRef90_A0A645AVJ0	S-l_SbsC_C domain-containing protein	NA
UHGV-0078993_54	eggNOG-mapper	86416.Clopa_0341	Phage capsid family	NA
UHGV-0078993_54	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0078993_54	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0078993_54	Structural annotation	PF18316	NA	NA
UHGV-0078993_55	PHROG	phrog_10	major head protein	head and packaging
UHGV-0078993_55	UniRef90	UniRef90_A0A415G894	Phage major capsid protein	NA
UHGV-0078993_55	eggNOG-mapper	1536774.H70357_10630	Phage capsid family	NA
UHGV-0078993_55	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0078993_55	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0078993_55	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0078993_55	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0078993_56	KOfam	K06904	NA	NA
UHGV-0078993_56	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0078993_56	UniRef90	UniRef90_A0A415G8A3	HK97 family phage prohead protease	NA
UHGV-0078993_56	eggNOG-mapper	927704.SELR_18200	Caudovirus prohead serine protease	NA
UHGV-0078993_56	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0078993_56	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0078993_56	COG	COG3740	Phage head maturation protease	NA
UHGV-0078993_56	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0078993_57	PHROG	phrog_12	portal protein	head and packaging
UHGV-0078993_57	UniRef90	UniRef90_UPI00156EE181	phage portal protein	NA
UHGV-0078993_57	eggNOG-mapper	1211817.CCAT010000007_gene1039	Portal protein	NA
UHGV-0078993_57	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0078993_57	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0078993_57	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0078993_58	eggNOG-mapper	1200557.JHWV01000006_gene1705	Membrane	NA
UHGV-0078993_58	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0078993_61	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0078993_61	UniRef90	UniRef90_A0A415G6S8	Terminase large subunit	NA
UHGV-0078993_61	eggNOG-mapper	1211817.CCAT010000007_gene1040	Terminase	NA
UHGV-0078993_61	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0078993_61	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0078993_61	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0078993_61	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0078993_62	Structural annotation	PF00041, NF038367	NA	NA
UHGV-0078993_63	PHROG	phrog_1066	NA	unknown function
UHGV-0078993_63	eggNOG-mapper	1157490.EL26_20730	NA	NA
UHGV-0078993_63	Structural annotation	TIGR01558, COG3747	NA	NA
UHGV-0078993_65	eggNOG-mapper	665956.HMPREF1032_02937	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0078993_65	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0078993_67	Structural annotation	PF17617, NF012201	NA	NA