UHGV-0079001

Genome information

Genome length 52,434 bps

CDS count 92

Completeness 97.04% (high-quality)

geNomad score 0.9709

Prediction confidence Confident

Genome information
Genome ID	UHGV-0079001
vOTU ID	vOTU-066688
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_146570
BioSample	SAMEA2737685
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.04% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9709
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.6
Jumbo phage	No

Genome content
Genome length	52,434 bps
GC content	43.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	92
CDS density	86.79%
Average CDS length	498.82 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0079001_1	KOfam	K14059	int; integrase	NA
UHGV-0079001_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0079001_1	UniRef90	UniRef90_UPI0011AF8E34	tyrosine-type recombinase/integrase	NA
UHGV-0079001_1	eggNOG-mapper	445972.ANACOL_01797	Belongs to the 'phage' integrase family	NA
UHGV-0079001_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0079001_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0079001_1	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0079001_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0079001_4	UniRef90	UniRef90_A0A8F2F0Z3	Helix-turn-helix domain-containing protein	NA
UHGV-0079001_4	eggNOG-mapper	411459.RUMOBE_00961	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0079001_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0079001_4	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0079001_4	Structural annotation	PF12844, MF_02017, NF007257, COG3655	NA	NA
UHGV-0079001_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0079001_5	UniRef90	UniRef90_A0A096BAN9	HTH cro/C1-type domain-containing protein	NA
UHGV-0079001_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0079001_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0079001_5	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0079001_9	eggNOG-mapper	1235835.C814_03153	NA	NA
UHGV-0079001_9	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0079001_11	PHROG	phrog_25245	NA	unknown function
UHGV-0079001_11	UniRef90	UniRef90_UPI001A9B205E	3D domain-containing protein	NA
UHGV-0079001_11	eggNOG-mapper	657322.FPR_26620	3D domain	NA
UHGV-0079001_11	Pfam	PF06725	3D domain	3D
UHGV-0079001_11	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0079001_11	Structural annotation	PF06725, MF_02071, NF040670, COG3584	NA	NA
UHGV-0079001_12	eggNOG-mapper	742735.HMPREF9467_00844	NA	NA
UHGV-0079001_15	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0079001_17	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0079001_17	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0079001_17	eggNOG-mapper	742767.HMPREF9456_02397	NA	NA
UHGV-0079001_18	PHROG	phrog_1389	NA	unknown function
UHGV-0079001_18	eggNOG-mapper	1347392.CCEZ01000060_gene3269	NA	NA
UHGV-0079001_18	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0079001_19	PHROG	phrog_7566	NA	unknown function
UHGV-0079001_19	eggNOG-mapper	693746.OBV_25470	NA	NA
UHGV-0079001_20	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0079001_20	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0079001_20	UniRef90	UniRef90_UPI000C7C4D36	single-stranded DNA-binding protein	NA
UHGV-0079001_20	eggNOG-mapper	428125.CLOLEP_00518	Single-stranded DNA-binding protein	NA
UHGV-0079001_20	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0079001_20	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0079001_20	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0079001_20	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0079001_20	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0079001_21	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0079001_21	UniRef90	UniRef90_S0A2V1	DNA replication protein	NA
UHGV-0079001_21	eggNOG-mapper	665956.HMPREF1032_02617	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0079001_21	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0079001_21	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0079001_22	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0079001_22	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0079001_22	UniRef90	UniRef90_UPI00164CCC1B	AAA family ATPase	NA
UHGV-0079001_22	eggNOG-mapper	665956.HMPREF1032_02618	Participates in initiation and elongation during chromosome replication	NA
UHGV-0079001_22	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0079001_22	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0079001_22	COG	COG0305	Replicative DNA helicase	NA
UHGV-0079001_22	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0079001_23	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0079001_23	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0079001_23	UniRef90	UniRef90_UPI0006D84EB7	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0079001_23	eggNOG-mapper	1118057.CAGX01000020_gene1647	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0079001_23	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0079001_23	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0079001_26	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0079001_26	UniRef90	UniRef90_A0A845R569	Methyltransferase domain-containing protein	NA
UHGV-0079001_26	eggNOG-mapper	411461.DORFOR_01143	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-0079001_26	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0079001_26	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0079001_26	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0079001_27	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0079001_28	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0079001_28	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0079001_28	UniRef90	UniRef90_UPI0018AA35A1	DNA adenine methylase	NA
UHGV-0079001_28	eggNOG-mapper	1226322.HMPREF1545_00291	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0079001_28	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0079001_28	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0079001_28	COG	COG0338	DNA-adenine methylase	NA
UHGV-0079001_28	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0079001_31	PHROG	phrog_8684	NA	unknown function
UHGV-0079001_31	UniRef90	UniRef90_UPI00189E57B4	YopX family protein	NA
UHGV-0079001_31	eggNOG-mapper	742767.HMPREF9456_02048	YopX protein	NA
UHGV-0079001_31	Pfam	PF09643	YopX protein	YopX
UHGV-0079001_31	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0079001_32	Pfam	PF04448	NA	DUF551
UHGV-0079001_34	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0079001_34	UniRef90	UniRef90_UPI001D07B715	DNA-packaging protein	NA
UHGV-0079001_34	eggNOG-mapper	877421.AUJT01000054_gene66	NA	NA
UHGV-0079001_34	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0079001_34	Structural annotation	PF16677	NA	NA
UHGV-0079001_35	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0079001_35	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0079001_35	UniRef90	UniRef90_A0A412AWF1	Restriction alleviation protein, Lar family	NA
UHGV-0079001_35	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0079001_35	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0079001_35	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0079001_37	Structural annotation	PF19881	NA	NA
UHGV-0079001_47	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0079001_47	UniRef90	UniRef90_A0A810QA10	Terminase	NA
UHGV-0079001_47	eggNOG-mapper	476272.RUMHYD_01940	TIGRFAM Phage	NA
UHGV-0079001_47	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0079001_47	COG	COG5410	NA	NA
UHGV-0079001_47	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0079001_48	Structural annotation	COG4416	NA	NA
UHGV-0079001_49	PHROG	phrog_64	portal protein	head and packaging
UHGV-0079001_49	UniRef90	UniRef90_A0A845RCM8	Phage portal protein	NA
UHGV-0079001_49	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0079001_49	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0079001_49	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0079001_51	PHROG	phrog_909	major head protein	head and packaging
UHGV-0079001_51	eggNOG-mapper	1298920.KI911353_gene2661	NA	NA
UHGV-0079001_52	PHROG	phrog_29	major head protein	head and packaging
UHGV-0079001_52	UniRef90	UniRef90_A0A7X5DZ98	Phage capsid protein	NA
UHGV-0079001_52	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-0079001_52	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0079001_52	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0079001_54	UniRef90	UniRef90_A0A845R6M6	DNA-packaging protein	NA
UHGV-0079001_54	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0079001_54	Structural annotation	TIGR01560	NA	NA
UHGV-0079001_55	PHROG	phrog_1233	NA	unknown function
UHGV-0079001_55	eggNOG-mapper	445972.ANACOL_01876	NA	NA
UHGV-0079001_56	eggNOG-mapper	1121866.AUGK01000003_gene1432	NA	NA
UHGV-0079001_56	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0079001_57	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0079001_57	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-0079001_57	eggNOG-mapper	397290.C810_01411	NA	NA
UHGV-0079001_57	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0079001_58	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0079001_59	PHROG	phrog_158	major tail protein	tail
UHGV-0079001_59	eggNOG-mapper	1121333.JMLH01000047_gene1013	NA	NA
UHGV-0079001_59	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0079001_60	UniRef90	UniRef90_A0A845R9E6	NA	NA
UHGV-0079001_60	Pfam	PF16478	NA	DUF5055
UHGV-0079001_60	Structural annotation	PF16478	NA	NA
UHGV-0079001_61	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0079001_62	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0079001_64	PHROG	phrog_3896	NA	unknown function
UHGV-0079001_64	UniRef90	UniRef90_E5RWT2	Srl	NA
UHGV-0079001_64	eggNOG-mapper	397290.C810_01338	NA	NA
UHGV-0079001_66	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0079001_66	UniRef90	UniRef90_A0A415D4P2	Bro-N domain-containing protein	NA
UHGV-0079001_66	eggNOG-mapper	596329.HMPREF0631_1352	BRO family, N-terminal domain protein	NA
UHGV-0079001_66	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0079001_66	COG	COG3617	Prophage antirepressor	NA
UHGV-0079001_66	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0079001_70	UniRef90	UniRef90_W1I523	Uncultured bacterium extrachromosomal DNA RGI02278	NA
UHGV-0079001_70	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0079001_70	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0079001_71	PHROG	phrog_559	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0079001_71	UniRef90	UniRef90_A0A0E0TF18	NA	NA
UHGV-0079001_71	eggNOG-mapper	1499685.CCFJ01000042_gene2505	Restriction endonuclease	NA
UHGV-0079001_71	Pfam	PF14311	Probable Zinc-ribbon domain	DUF4379
UHGV-0079001_71	Pfam	PF10881	NA	DUF2726
UHGV-0079001_71	COG	COG3440	Predicted restriction endonuclease	NA
UHGV-0079001_71	Structural annotation	PF18741, PF14311, MF_04160, NF007294, COG3727	NA	NA
UHGV-0079001_72	PHROG	phrog_28918	NA	unknown function
UHGV-0079001_72	eggNOG-mapper	397288.C806_03052	domain protein	NA
UHGV-0079001_72	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0079001_73	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0079001_73	UniRef90	UniRef90_A0A810Q5P5	GIY-YIG domain-containing protein	NA
UHGV-0079001_73	eggNOG-mapper	929703.KE386491_gene1108	Intron encoded nuclease repeat motif	NA
UHGV-0079001_73	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0079001_73	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0079001_73	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-0079001_73	Structural annotation	PF07453, PF19835, PF04936, TIGR01453	NA	NA
UHGV-0079001_74	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0079001_74	eggNOG-mapper	1123263.AUKY01000015_gene1620	Phage tail tape measure protein TP901	NA
UHGV-0079001_74	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0079001_74	Structural annotation	TIGR04319	NA	NA
UHGV-0079001_75	PHROG	phrog_1194	NA	unknown function
UHGV-0079001_75	eggNOG-mapper	585501.HMPREF6123_0824	NA	NA
UHGV-0079001_75	Pfam	PF20458	NA	DUF6711
UHGV-0079001_75	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0079001_76	PHROG	phrog_13879	NA	unknown function
UHGV-0079001_76	eggNOG-mapper	1408415.JHXL01000001_gene402	NA	NA
UHGV-0079001_76	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0079001_77	eggNOG-mapper	585501.HMPREF6123_0822	NA	NA
UHGV-0079001_79	UniRef90	UniRef90_A0A372V7Z4	Peptidase_M23 domain-containing protein	NA
UHGV-0079001_79	eggNOG-mapper	665956.HMPREF1032_02928	NA	NA
UHGV-0079001_79	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-0079001_80	PHROG	phrog_1129	holin	lysis
UHGV-0079001_80	UniRef90	UniRef90_A0A0D8J2M2	Enolase	NA
UHGV-0079001_80	eggNOG-mapper	665956.HMPREF1032_03272	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0079001_80	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0079001_80	Structural annotation	PF06946	NA	NA
UHGV-0079001_81	UniRef90	UniRef90_UPI001E4D989F	CTP synthase	NA
UHGV-0079001_81	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0079001_85	eggNOG-mapper	1408437.JNJN01000043_gene805	NA	NA
UHGV-0079001_87	PHROG	phrog_16490	NA	unknown function
UHGV-0079001_87	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0079001_88	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0079001_89	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0079001_91	KOfam	K03790	rimJ; [ribosomal protein S5]-alanine N-acetyltransferase [EC:2.3.1.267]	NA
UHGV-0079001_91	PHROG	phrog_1249	acetyltransferase	other
UHGV-0079001_91	UniRef90	UniRef90_A0A8F2JC71	GNAT family N-acetyltransferase	NA
UHGV-0079001_91	eggNOG-mapper	1226325.HMPREF1548_04840	guanosine monophosphate synthetase GuaA K01951	NA
UHGV-0079001_91	Pfam	PF13302	Acetyltransferase (GNAT) domain	Acetyltransf_3
UHGV-0079001_91	COG	COG1670	Protein N-acetyltransferase, RimJ/RimL family	NA
UHGV-0079001_91	Structural annotation	PF13302, MF_02210, NF000485, COG1670	NA	NA
UHGV-0079001_92	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0079001_92	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0079001_92	UniRef90	UniRef90_UPI00164B5D8A	ribonuclease HI	NA
UHGV-0079001_92	eggNOG-mapper	1120746.CCNL01000013_gene2028	RNase H	NA
UHGV-0079001_92	Pfam	PF00075	RNase H	RNase_H
UHGV-0079001_92	COG	COG0328	Ribonuclease HI	NA