UHGV-0079035

Genome information

Genome length 43,033 bps

CDS count 58

Completeness 98.80% (high-quality)

geNomad score 0.9814

Prediction confidence Confident

Genome information
Genome ID	UHGV-0079035
vOTU ID	vOTU-061611
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_152015
BioSample	SAMEA2784455
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.80% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9814
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.75
Jumbo phage	No

Genome content
Genome length	43,033 bps
GC content	44.46%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	93.49%
Average CDS length	697.45 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0079035_1	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0079035_1	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0079035_1	UniRef90	UniRef90_UPI001D0EDCE7	reverse transcriptase domain-containing protein	NA
UHGV-0079035_1	eggNOG-mapper	657322.FPR_27160	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0079035_1	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0079035_1	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-0079035_2	PHROG	phrog_1348	tail fiber protein	tail
UHGV-0079035_2	UniRef90	UniRef90_UPI001C0F60E0	acyl carrier protein	NA
UHGV-0079035_2	eggNOG-mapper	411902.CLOBOL_05646	NA	NA
UHGV-0079035_2	Structural annotation	PF14301	NA	NA
UHGV-0079035_3	PHROG	phrog_20274	NA	unknown function
UHGV-0079035_3	UniRef90	UniRef90_UPI001C02045F	putative ABC transporter permease	NA
UHGV-0079035_3	eggNOG-mapper	657322.FPR_21900	NA	NA
UHGV-0079035_3	Pfam	PF06541	Putative ABC-transporter type IV	ABC_trans_CmpB
UHGV-0079035_3	COG	COG4905	NA	NA
UHGV-0079035_3	Structural annotation	PF06541, COG4905	NA	NA
UHGV-0079035_4	PHROG	phrog_199	holin	lysis
UHGV-0079035_4	UniRef90	UniRef90_A0A416MND6	Holin	NA
UHGV-0079035_4	eggNOG-mapper	411462.DORLON_00766	Bacteriophage holin family	NA
UHGV-0079035_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0079035_4	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0079035_4	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0079035_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0079035_5	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0079035_5	PHROG	phrog_1794	amidase	lysis
UHGV-0079035_5	UniRef90	UniRef90_A0A416MN83	MurNAc-LAA domain-containing protein	NA
UHGV-0079035_5	eggNOG-mapper	478749.BRYFOR_07564	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0079035_5	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0079035_5	COG	COG3087	Cell division protein FtsN	NA
UHGV-0079035_5	Structural annotation	PF01520, TIGR02883, COG0860	NA	NA
UHGV-0079035_6	KOfam	K14059	int; integrase	NA
UHGV-0079035_6	PHROG	phrog_1	integrase	integration and excision
UHGV-0079035_6	UniRef90	UniRef90_A0A3D2X912	Recombinase XerD	NA
UHGV-0079035_6	eggNOG-mapper	665950.HMPREF1025_01927	Phage integrase family	NA
UHGV-0079035_6	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0079035_6	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0079035_6	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0079035_7	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0079035_7	UniRef90	UniRef90_A0A3D3U9W3	Mrr_cat domain-containing protein	NA
UHGV-0079035_7	eggNOG-mapper	1235790.C805_00010	Restriction endonuclease	NA
UHGV-0079035_7	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0079035_7	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0079035_7	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0079035_8	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0079035_8	UniRef90	UniRef90_A0A416ZS29	XRE family transcriptional regulator	NA
UHGV-0079035_8	eggNOG-mapper	1280698.AUJS01000007_gene1001	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0079035_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0079035_8	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0079035_9	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0079035_9	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0079035_9	UniRef90	UniRef90_A0A3D3U8U0	XRE family transcriptional regulator	NA
UHGV-0079035_9	eggNOG-mapper	97139.C824_05937	Helix-turn-helix XRE-family like proteins	NA
UHGV-0079035_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0079035_9	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0079035_9	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0079035_12	PHROG	phrog_2232	NA	unknown function
UHGV-0079035_12	UniRef90	UniRef90_UPI00156E138F	NA	NA
UHGV-0079035_12	eggNOG-mapper	397288.C806_01275	NA	NA
UHGV-0079035_12	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-0079035_12	Structural annotation	PF14337, TIGR03899	NA	NA
UHGV-0079035_13	PHROG	phrog_6058	NA	unknown function
UHGV-0079035_13	eggNOG-mapper	411460.RUMTOR_02008	NA	NA
UHGV-0079035_15	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0079035_15	UniRef90	UniRef90_UPI001B3C9121	ORF6C domain-containing protein	NA
UHGV-0079035_15	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0079035_15	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0079035_15	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0079035_15	COG	COG3617	Prophage antirepressor	NA
UHGV-0079035_17	Structural annotation	COG4481	NA	NA
UHGV-0079035_18	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0079035_18	UniRef90	UniRef90_A0A1C6CBG4	Siphovirus Gp157	NA
UHGV-0079035_18	eggNOG-mapper	699218.HMPREF0889_0310	Siphovirus Gp157	NA
UHGV-0079035_18	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0079035_18	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0079035_20	PHROG	phrog_14970	NA	unknown function
UHGV-0079035_20	eggNOG-mapper	1235798.C817_00385	double-strand break repair protein	NA
UHGV-0079035_20	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0079035_20	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0079035_20	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0079035_21	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0079035_21	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0079035_21	UniRef90	UniRef90_A0A176U568	Single-stranded DNA-binding protein	NA
UHGV-0079035_21	eggNOG-mapper	457421.CBFG_04823	Single-strand binding protein family	NA
UHGV-0079035_21	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0079035_21	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0079035_21	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0079035_21	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0079035_21	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0079035_22	UniRef90	UniRef90_A0A416VJG7	NA	NA
UHGV-0079035_22	Pfam	PF14190	NA	DUF4313
UHGV-0079035_22	Structural annotation	PF14190	NA	NA
UHGV-0079035_23	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0079035_23	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0079035_23	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0079035_24	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0079035_24	UniRef90	UniRef90_UPI0018A9E0B0	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0079035_24	eggNOG-mapper	626523.GCWU000342_01039	DnaD domain protein	NA
UHGV-0079035_24	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0079035_24	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0079035_24	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0079035_25	PHROG	phrog_9804	NA	unknown function
UHGV-0079035_25	UniRef90	UniRef90_A0A174WNQ9	Loader and inhibitor of phage G40P	NA
UHGV-0079035_25	eggNOG-mapper	632292.Calhy_0752	Loader and inhibitor of phage G40P	NA
UHGV-0079035_25	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0079035_26	UniRef90	UniRef90_A0A373CBJ4	C2H2-type domain-containing protein	NA
UHGV-0079035_28	PHROG	phrog_7566	NA	unknown function
UHGV-0079035_28	eggNOG-mapper	411471.SUBVAR_05830	NA	NA
UHGV-0079035_30	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0079035_30	Structural annotation	PF05225, NF040595	NA	NA
UHGV-0079035_33	UniRef90	UniRef90_A0A1C5TF07	NA	NA
UHGV-0079035_33	eggNOG-mapper	742733.HMPREF9469_00921	NA	NA
UHGV-0079035_35	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0079035_35	UniRef90	UniRef90_A0A3D3U8Q6	Sigma70_r4 domain-containing protein	NA
UHGV-0079035_35	eggNOG-mapper	1256908.HMPREF0373_00671	NA	NA
UHGV-0079035_35	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0079035_35	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0079035_36	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0079035_36	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0079035_36	UniRef90	UniRef90_A0A415YC75	Phage portal protein	NA
UHGV-0079035_36	eggNOG-mapper	1235799.C818_04216	Putative ATPase subunit of terminase (gpP-like)	NA
UHGV-0079035_36	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0079035_36	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0079035_36	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0079035_36	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0079035_37	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0079035_37	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0079035_37	UniRef90	UniRef90_UPI0018985A97	PBSX family phage terminase large subunit	NA
UHGV-0079035_37	eggNOG-mapper	411461.DORFOR_00750	COG COG1783 Phage terminase large subunit	NA
UHGV-0079035_37	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0079035_37	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0079035_37	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0079035_37	COG	COG1783	Phage terminase large subunit	NA
UHGV-0079035_37	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0079035_38	PHROG	phrog_533	portal protein	head and packaging
UHGV-0079035_38	UniRef90	UniRef90_UPI001897501E	phage portal protein	NA
UHGV-0079035_38	eggNOG-mapper	411461.DORFOR_00749	COG NOG25118 non supervised orthologous group	NA
UHGV-0079035_38	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0079035_38	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0079035_39	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0079035_39	UniRef90	UniRef90_A0A3D3U8R6	Minor capsid protein	NA
UHGV-0079035_39	eggNOG-mapper	1235799.C818_04219	Phage minor capsid protein 2	NA
UHGV-0079035_39	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0079035_39	COG	COG2369	NA	NA
UHGV-0079035_39	Structural annotation	PF06152	NA	NA
UHGV-0079035_40	PHROG	phrog_15041	NA	unknown function
UHGV-0079035_40	eggNOG-mapper	1304866.K413DRAFT_0808	NA	NA
UHGV-0079035_40	Structural annotation	PF10827	NA	NA
UHGV-0079035_41	KOfam	K07584	NA	NA
UHGV-0079035_41	PHROG	phrog_4478	peptidase	other
UHGV-0079035_41	UniRef90	UniRef90_UPI00156D7F8B	ribosomal-processing cysteine protease Prp	NA
UHGV-0079035_41	eggNOG-mapper	411461.DORFOR_00746	Pfam:Peptidase_C108	NA
UHGV-0079035_41	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0079035_41	COG	COG2868	NA	NA
UHGV-0079035_41	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0079035_42	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0079035_42	eggNOG-mapper	411462.DORLON_00787	NA	NA
UHGV-0079035_42	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-0079035_43	PHROG	phrog_10	major head protein	head and packaging
UHGV-0079035_43	UniRef90	UniRef90_UPI00157128C8	phage major capsid protein	NA
UHGV-0079035_43	eggNOG-mapper	411461.DORFOR_00744	COG NOG20168 non supervised orthologous group	NA
UHGV-0079035_43	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0079035_43	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0079035_43	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0079035_43	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0079035_44	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0079035_44	eggNOG-mapper	658655.HMPREF0988_02559	NA	NA
UHGV-0079035_45	PHROG	phrog_3366	NA	unknown function
UHGV-0079035_45	Pfam	PF20536	NA	DUF6751
UHGV-0079035_45	Structural annotation	PF20536	NA	NA
UHGV-0079035_46	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0079035_46	UniRef90	UniRef90_UPI000930E2B9	minor capsid protein	NA
UHGV-0079035_46	eggNOG-mapper	411461.DORFOR_01170	Minor capsid protein	NA
UHGV-0079035_46	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0079035_46	Structural annotation	PF11114	NA	NA
UHGV-0079035_47	PHROG	phrog_3266	tail completion	connector
UHGV-0079035_47	eggNOG-mapper	663278.Ethha_0098	NA	NA
UHGV-0079035_47	Structural annotation	PF12691	NA	NA
UHGV-0079035_48	PHROG	phrog_3099	NA	unknown function
UHGV-0079035_48	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0079035_48	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0079035_49	PHROG	phrog_11299	NA	unknown function
UHGV-0079035_49	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0079035_49	Structural annotation	PF10666	NA	NA
UHGV-0079035_50	PHROG	phrog_706	NA	unknown function
UHGV-0079035_50	UniRef90	UniRef90_A0A1C5M8I2	Bacteriophage Gp15 protein	NA
UHGV-0079035_50	eggNOG-mapper	476272.RUMHYD_01784	Bacteriophage Gp15 protein	NA
UHGV-0079035_50	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0079035_50	Structural annotation	PF06854	NA	NA
UHGV-0079035_51	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0079035_51	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0079035_51	UniRef90	UniRef90_A0A1C5N853	Phage-related protein	NA
UHGV-0079035_51	eggNOG-mapper	411459.RUMOBE_01384	phage tail tape measure protein	NA
UHGV-0079035_51	COG	COG5412	Phage-related protein	NA
UHGV-0079035_51	Structural annotation	PF11172	NA	NA
UHGV-0079035_52	PHROG	phrog_1194	NA	unknown function
UHGV-0079035_52	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0079035_53	PHROG	phrog_6616	tail protein	tail
UHGV-0079035_53	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0079035_53	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0079035_54	PHROG	phrog_372	tail protein	tail
UHGV-0079035_54	UniRef90	UniRef90_UPI001C0AA9E4	NA	NA
UHGV-0079035_54	eggNOG-mapper	552396.HMPREF0863_01449	NA	NA
UHGV-0079035_54	Pfam	PF05895	NA	DUF859
UHGV-0079035_54	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0079035_54	Structural annotation	PF05895, MF_04116, NF010681, COG3291	NA	NA
UHGV-0079035_55	PHROG	phrog_16164	NA	unknown function
UHGV-0079035_55	eggNOG-mapper	457412.RSAG_01113	NA	NA
UHGV-0079035_55	Structural annotation	PF10651, NF032891	NA	NA
UHGV-0079035_56	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0079035_57	eggNOG-mapper	657322.FPR_27150	NA	NA
UHGV-0079035_58	PHROG	phrog_17147	NA	unknown function
UHGV-0079035_58	eggNOG-mapper	657322.FPR_27150	NA	NA