UHGV-0079061

Genome information

Genome length 37,813 bps

CDS count 59

Completeness 94.02% (high-quality)

geNomad score 0.9721

Prediction confidence Confident

Genome information
Genome ID	UHGV-0079061
vOTU ID	vOTU-063628
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_157936
BioSample	SAMEA2784474
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.02% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9721
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	63.74
Jumbo phage	No

Genome content
Genome length	37,813 bps
GC content	37.16%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	92.34%
Average CDS length	594.76 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0079061_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0079061_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0079061_1	UniRef90	UniRef90_A0A354I2N3	Recombinase family protein	NA
UHGV-0079061_1	eggNOG-mapper	411460.RUMTOR_02053	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0079061_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0079061_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0079061_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0079061_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0079061_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0079061_2	PHROG	phrog_1281	NA	unknown function
UHGV-0079061_2	UniRef90	UniRef90_A0A7U9NJB9	Antitoxin SocA	NA
UHGV-0079061_2	eggNOG-mapper	1033744.CAEL01000026_gene1412	NA	NA
UHGV-0079061_2	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0079061_2	COG	COG3600	NA	NA
UHGV-0079061_2	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0079061_3	PHROG	phrog_5763	NA	unknown function
UHGV-0079061_3	eggNOG-mapper	1033744.CAEL01000026_gene1411	NA	NA
UHGV-0079061_4	UniRef90	UniRef90_A0A3D5LST6	Transcriptional regulator	NA
UHGV-0079061_4	eggNOG-mapper	537013.CLOSTMETH_01059	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0079061_4	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0079061_4	Structural annotation	PF13560, NF000090, COG3655	NA	NA
UHGV-0079061_5	UniRef90	UniRef90_F5L211	Conserved domain protein	NA
UHGV-0079061_5	Structural annotation	PF19923	NA	NA
UHGV-0079061_6	COG	COG2169	Methylphosphotriester-DNA--protein-cysteine methyltransferase (N-terminal fragment of Ada), contains Zn-binding and two AraC-type DNA-binding domains	NA
UHGV-0079061_7	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0079061_7	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0079061_7	UniRef90	UniRef90_A0A3D5LSQ6	XRE family transcriptional regulator	NA
UHGV-0079061_7	eggNOG-mapper	411468.CLOSCI_01455	Helix-turn-helix XRE-family like proteins	NA
UHGV-0079061_7	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0079061_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0079061_7	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0079061_9	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0079061_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0079061_9	UniRef90	UniRef90_A0A6L8T004	Helix-turn-helix domain-containing protein	NA
UHGV-0079061_9	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0079061_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0079061_9	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0079061_9	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0079061_14	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0079061_14	eggNOG-mapper	1235800.C819_02258	NA	NA
UHGV-0079061_14	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0079061_15	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0079061_15	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0079061_15	UniRef90	UniRef90_J4WXS1	Ribonuclease H	NA
UHGV-0079061_15	eggNOG-mapper	1286106.MPL1_10292	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0079061_15	Pfam	PF00075	RNase H	RNase_H
UHGV-0079061_15	COG	COG0328	Ribonuclease HI	NA
UHGV-0079061_15	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0079061_17	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0079061_17	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0079061_17	UniRef90	UniRef90_A0A173W8R8	Modification methylase MboII	NA
UHGV-0079061_17	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0079061_17	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0079061_17	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0079061_17	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0079061_17	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0079061_18	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0079061_18	UniRef90	UniRef90_A0A3A8YTX2	NA	NA
UHGV-0079061_18	eggNOG-mapper	1095750.HMPREF9970_1671	NA	NA
UHGV-0079061_18	Pfam	PF14359	NA	DUF4406
UHGV-0079061_18	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0079061_18	Structural annotation	PF14359, TIGR02133, COG3613	NA	NA
UHGV-0079061_19	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0079061_19	UniRef90	UniRef90_A0A417WAJ1	HNH endonuclease	NA
UHGV-0079061_19	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0079061_22	eggNOG-mapper	1235793.C809_02210	NA	NA
UHGV-0079061_23	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-0079061_24	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0079061_24	UniRef90	UniRef90_R5ZJF1	HNH endonuclease	NA
UHGV-0079061_24	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0079061_24	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0079061_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0079061_24	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0079061_26	PHROG	phrog_8684	NA	unknown function
UHGV-0079061_26	UniRef90	UniRef90_UPI001BC82BF2	YopX family protein	NA
UHGV-0079061_26	eggNOG-mapper	742733.HMPREF9469_00912	YopX protein	NA
UHGV-0079061_26	Pfam	PF09643	YopX protein	YopX
UHGV-0079061_29	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0079061_29	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0079061_29	UniRef90	UniRef90_A0A371AY30	Single-stranded DNA-binding protein	NA
UHGV-0079061_29	eggNOG-mapper	742723.HMPREF9477_01387	Single-strand binding protein family	NA
UHGV-0079061_29	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0079061_29	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0079061_29	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0079061_29	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0079061_29	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0079061_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0079061_32	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0079061_35	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0079061_35	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0079061_35	UniRef90	UniRef90_A0A3A9F5W5	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0079061_35	eggNOG-mapper	476272.RUMHYD_02842	NA	NA
UHGV-0079061_35	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0079061_35	Structural annotation	PF07927	NA	NA
UHGV-0079061_36	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0079061_36	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0079061_36	UniRef90	UniRef90_A0A7C6P163	HicB family protein	NA
UHGV-0079061_36	eggNOG-mapper	397291.C804_06459	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0079061_36	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0079061_36	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0079061_36	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0079061_37	Pfam	PF07374	NA	DUF1492
UHGV-0079061_38	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0079061_38	UniRef90	UniRef90_UPI001D088AD3	DNA-packaging protein	NA
UHGV-0079061_38	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0079061_38	Structural annotation	PF16677	NA	NA
UHGV-0079061_39	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0079061_39	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0079061_39	UniRef90	UniRef90_A0A3D2ILQ6	PBSX family phage terminase large subunit	NA
UHGV-0079061_39	eggNOG-mapper	411461.DORFOR_00750	COG COG1783 Phage terminase large subunit	NA
UHGV-0079061_39	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0079061_39	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0079061_39	COG	COG1783	Phage terminase large subunit	NA
UHGV-0079061_39	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0079061_40	PHROG	phrog_533	portal protein	head and packaging
UHGV-0079061_40	UniRef90	UniRef90_UPI001C0FB394	phage portal protein	NA
UHGV-0079061_40	eggNOG-mapper	411462.DORLON_00795	COG NOG25118 non supervised orthologous group	NA
UHGV-0079061_40	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0079061_40	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0079061_41	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0079061_41	UniRef90	UniRef90_A0A3D3U8R6	Minor capsid protein	NA
UHGV-0079061_41	eggNOG-mapper	411461.DORFOR_01164	NA	NA
UHGV-0079061_41	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0079061_41	COG	COG2369	NA	NA
UHGV-0079061_41	Structural annotation	PF06152	NA	NA
UHGV-0079061_42	KOfam	K07584	NA	NA
UHGV-0079061_42	PHROG	phrog_4478	peptidase	other
UHGV-0079061_42	UniRef90	UniRef90_UPI001C100185	ribosomal-processing cysteine protease Prp	NA
UHGV-0079061_42	eggNOG-mapper	411462.DORLON_00788	Pfam:Peptidase_C108	NA
UHGV-0079061_42	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0079061_42	COG	COG2868	NA	NA
UHGV-0079061_42	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0079061_43	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0079061_43	eggNOG-mapper	411461.DORFOR_00745	NA	NA
UHGV-0079061_43	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-0079061_44	PHROG	phrog_10	major head protein	head and packaging
UHGV-0079061_44	UniRef90	UniRef90_A0A415YC03	Phage major capsid protein	NA
UHGV-0079061_44	eggNOG-mapper	411461.DORFOR_00744	COG NOG20168 non supervised orthologous group	NA
UHGV-0079061_44	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0079061_44	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0079061_44	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0079061_44	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0079061_45	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0079061_45	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-0079061_46	PHROG	phrog_3366	NA	unknown function
UHGV-0079061_46	Pfam	PF20536	NA	DUF6751
UHGV-0079061_46	Structural annotation	PF20536	NA	NA
UHGV-0079061_47	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0079061_47	UniRef90	UniRef90_UPI000930E2B9	minor capsid protein	NA
UHGV-0079061_47	eggNOG-mapper	411461.DORFOR_01170	Minor capsid protein	NA
UHGV-0079061_47	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0079061_47	Structural annotation	PF11114	NA	NA
UHGV-0079061_48	PHROG	phrog_3266	tail completion	connector
UHGV-0079061_48	eggNOG-mapper	428127.EUBDOL_01219	NA	NA
UHGV-0079061_48	Structural annotation	PF12691	NA	NA
UHGV-0079061_49	PHROG	phrog_820	major tail protein	tail
UHGV-0079061_49	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-0079061_49	eggNOG-mapper	411461.DORFOR_01172	NA	NA
UHGV-0079061_49	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0079061_50	Pfam	PF20378	NA	DUF6673
UHGV-0079061_50	Structural annotation	PF20378	NA	NA
UHGV-0079061_51	PHROG	phrog_706	NA	unknown function
UHGV-0079061_51	UniRef90	UniRef90_A0A1C5ZNX7	Bacteriophage Gp15 protein	NA
UHGV-0079061_51	eggNOG-mapper	1292035.H476_1007	Bacteriophage Gp15 protein	NA
UHGV-0079061_51	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0079061_51	Structural annotation	PF06854	NA	NA
UHGV-0079061_52	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0079061_52	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0079061_52	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0079061_53	UniRef90	UniRef90_UPI0015709E93	phage tail protein	NA
UHGV-0079061_53	eggNOG-mapper	411468.CLOSCI_02410	NA	NA
UHGV-0079061_53	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0079061_54	PHROG	phrog_538	minor tail protein	tail
UHGV-0079061_54	eggNOG-mapper	1256908.HMPREF0373_00466	NA	NA
UHGV-0079061_54	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0079061_54	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0079061_55	PHROG	phrog_9994	NA	unknown function
UHGV-0079061_55	eggNOG-mapper	742723.HMPREF9477_00894	NA	NA
UHGV-0079061_56	PHROG	phrog_1348	tail fiber protein	tail
UHGV-0079061_56	eggNOG-mapper	693746.OBV_22700	NA	NA
UHGV-0079061_56	Pfam	PF11192	NA	DUF2977
UHGV-0079061_56	Structural annotation	PF14301	NA	NA
UHGV-0079061_57	PHROG	phrog_4105	NA	unknown function
UHGV-0079061_57	eggNOG-mapper	1394176.AWUO01000014_gene648	NA	NA
UHGV-0079061_58	PHROG	phrog_443	holin	lysis
UHGV-0079061_58	UniRef90	UniRef90_A0A1M6RHE6	Holin, r1t family	NA
UHGV-0079061_58	eggNOG-mapper	742733.HMPREF9469_01797	Putative lactococcus lactis phage r1t holin	NA
UHGV-0079061_58	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0079061_58	Structural annotation	PF16945	NA	NA
UHGV-0079061_59	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0079061_59	PHROG	phrog_435	endolysin	lysis
UHGV-0079061_59	UniRef90	UniRef90_UPI001C1E33C2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0079061_59	eggNOG-mapper	411490.ANACAC_00597	Cell wall hydrolase autolysin	NA
UHGV-0079061_59	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0079061_59	Pfam	PF14200	Ricin-type beta-trefoil lectin domain-like	RicinB_lectin_2
UHGV-0079061_59	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0079061_59	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860, COG5492	NA	NA