UHGV-0079093

Genome information

Genome length 20,665 bps

CDS count 45

Completeness 50.67% (medium-quality)

geNomad score 0.9785

Prediction confidence Confident

Genome information
Genome ID	UHGV-0079093
vOTU ID	vOTU-022259
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_163101
BioSample	SAMEA3136694
Country	Austria
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	50.67% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9785
Virus hallmark genes (geNomad)	1
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	12.55
Jumbo phage	No

Genome content
Genome length	20,665 bps
GC content	53.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	86.75%
Average CDS length	404.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0079093_3	PHROG	phrog_3754	NA	unknown function
UHGV-0079093_3	eggNOG-mapper	1226322.HMPREF1545_00073	NA	NA
UHGV-0079093_4	PHROG	phrog_21718	NA	unknown function
UHGV-0079093_4	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0079093_5	PHROG	phrog_22984	NA	unknown function
UHGV-0079093_6	PHROG	phrog_16490	NA	unknown function
UHGV-0079093_6	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0079093_7	PHROG	phrog_20016	NA	unknown function
UHGV-0079093_7	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0079093_7	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0079093_7	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0079093_8	Structural annotation	PF12510	NA	NA
UHGV-0079093_9	eggNOG-mapper	1232443.BAIA02000078_gene6	NA	NA
UHGV-0079093_10	KOfam	K14059	int; integrase	NA
UHGV-0079093_10	PHROG	phrog_1	integrase	integration and excision
UHGV-0079093_10	UniRef90	UniRef90_A0A810Q0L1	Tyr recombinase domain-containing protein	NA
UHGV-0079093_10	eggNOG-mapper	445972.ANACOL_01797	Belongs to the 'phage' integrase family	NA
UHGV-0079093_10	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0079093_10	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0079093_10	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0079093_11	UniRef90	UniRef90_A0A810PZB1	HTH cro/C1-type domain-containing protein	NA
UHGV-0079093_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0079093_11	Structural annotation	PF13443, TIGR03070, COG3655	NA	NA
UHGV-0079093_14	Structural annotation	PF03885	NA	NA
UHGV-0079093_15	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0079093_15	UniRef90	UniRef90_A0A810Q1T1	HTH cro/C1-type domain-containing protein	NA
UHGV-0079093_15	eggNOG-mapper	411459.RUMOBE_00961	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0079093_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0079093_15	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0079093_15	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0079093_16	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0079093_16	UniRef90	UniRef90_A0A328UFC2	HTH cro/C1-type domain-containing protein	NA
UHGV-0079093_16	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0079093_16	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0079093_16	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0079093_17	UniRef90	UniRef90_A0A8D9PDM8	Pyocin activator protein	NA
UHGV-0079093_17	Structural annotation	PF11112, COG3311	NA	NA
UHGV-0079093_21	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0079093_21	UniRef90	UniRef90_A0A8D9PDS3	Resistance protein	NA
UHGV-0079093_21	eggNOG-mapper	748224.HMPREF9436_03356	Siphovirus Gp157	NA
UHGV-0079093_21	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0079093_21	Structural annotation	PF05565	NA	NA
UHGV-0079093_22	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0079093_22	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0079093_22	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0079093_22	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0079093_23	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0079093_23	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0079093_23	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0079093_23	Structural annotation	PF05772	NA	NA
UHGV-0079093_25	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0079093_25	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0079093_25	UniRef90	UniRef90_A0A810PUK9	Single-stranded DNA-binding protein	NA
UHGV-0079093_25	eggNOG-mapper	1203606.HMPREF1526_01880	Single-stranded DNA-binding protein	NA
UHGV-0079093_25	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0079093_25	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0079093_25	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0079093_25	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0079093_25	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0079093_26	PHROG	phrog_15768	NA	unknown function
UHGV-0079093_26	UniRef90	UniRef90_A0A417QFV0	Transcriptional regulator	NA
UHGV-0079093_26	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-0079093_26	Structural annotation	PF01475, MF_01819, NF006999, COG0735	NA	NA
UHGV-0079093_27	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0079093_27	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0079093_27	UniRef90	UniRef90_A0A810Q3X8	IstB_IS21 domain-containing protein	NA
UHGV-0079093_27	eggNOG-mapper	445972.ANACOL_01829	NA	NA
UHGV-0079093_27	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0079093_27	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0079093_27	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-0079093_28	PHROG	phrog_16528	DNA methyltransferase	other
UHGV-0079093_28	UniRef90	UniRef90_A0A6N9PX21	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0079093_28	eggNOG-mapper	657322.FPR_26610	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0079093_28	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0079093_28	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0079093_28	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0079093_29	Structural annotation	TIGR00122, COG1654	NA	NA
UHGV-0079093_30	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0079093_30	UniRef90	UniRef90_UPI001C3BADA7	Radical SAM protein	NA
UHGV-0079093_30	eggNOG-mapper	1235797.C816_00412	NA	NA
UHGV-0079093_30	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0079093_30	Structural annotation	MF_01865, NF010916, COG0621	NA	NA
UHGV-0079093_32	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0079093_32	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0079093_32	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0079093_32	eggNOG-mapper	561177.ANHYDRO_01396	Endodeoxyribonuclease RusA	NA
UHGV-0079093_32	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0079093_32	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0079093_32	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0079093_34	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0079093_34	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0079093_34	UniRef90	UniRef90_UPI001D0C2D23	helix-turn-helix domain-containing protein	NA
UHGV-0079093_34	eggNOG-mapper	160492.XF_0696	Helix-turn-helix domain	NA
UHGV-0079093_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0079093_34	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0079093_34	Structural annotation	PF13443, NF041951, COG1396	NA	NA
UHGV-0079093_35	PHROG	phrog_22529	NA	unknown function
UHGV-0079093_35	UniRef90	UniRef90_A0A810Q1V0	3D domain-containing protein	NA
UHGV-0079093_35	eggNOG-mapper	658088.HMPREF0987_02675	peptidase	NA
UHGV-0079093_35	Pfam	PF06725	3D domain	3D
UHGV-0079093_35	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0079093_35	Structural annotation	PF06725, NF040670, COG3584	NA	NA
UHGV-0079093_36	PHROG	phrog_38832	NA	unknown function
UHGV-0079093_36	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0079093_37	PHROG	phrog_3136	NA	unknown function
UHGV-0079093_37	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0079093_37	eggNOG-mapper	642492.Clole_1416	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0079093_37	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0079093_37	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0079093_41	PHROG	phrog_18716	NA	unknown function
UHGV-0079093_41	UniRef90	UniRef90_R6RP50	NA	NA
UHGV-0079093_41	eggNOG-mapper	575540.Isop_2447	NA	NA
UHGV-0079093_41	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0079093_41	Structural annotation	PF18909	NA	NA
UHGV-0079093_44	eggNOG-mapper	693746.OBV_18010	NA	NA
UHGV-0079093_44	Structural annotation	TIGR01636	NA	NA