UHGV-0079173

Genome information

Genome length 31,181 bps

CDS count 51

Completeness 100.00% (complete)

geNomad score 0.9620

Prediction confidence Confident

Genome information
Genome ID	UHGV-0079173
vOTU ID	vOTU-045149
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_148304
BioSample	NA
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9620
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.82
Jumbo phage	No

Genome content
Genome length	31,181 bps
GC content	57.07%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	89.32%
Average CDS length	550.12 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0079173_1	PHROG	phrog_1129	holin	lysis
UHGV-0079173_1	UniRef90	UniRef90_A0A316PMB0	Enolase	NA
UHGV-0079173_1	eggNOG-mapper	1007096.BAGW01000036_gene2663	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0079173_1	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0079173_1	Structural annotation	PF06946	NA	NA
UHGV-0079173_2	PHROG	phrog_4105	NA	unknown function
UHGV-0079173_2	eggNOG-mapper	1687.BCOR_0969	NA	NA
UHGV-0079173_3	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0079173_3	PHROG	phrog_7698	endolysin	lysis
UHGV-0079173_3	UniRef90	UniRef90_A0A316PMU2	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0079173_3	eggNOG-mapper	411473.RUMCAL_00325	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0079173_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0079173_3	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0079173_3	Structural annotation	PF21086, MF_01450, NF010999, COG3830	NA	NA
UHGV-0079173_5	Structural annotation	PF11514	NA	NA
UHGV-0079173_6	PHROG	phrog_9534	head protein	head and packaging
UHGV-0079173_6	UniRef90	UniRef90_K4Z6J0	Putative phage protein	NA
UHGV-0079173_6	eggNOG-mapper	665956.HMPREF1032_02939	COG NOG18825 non supervised orthologous group	NA
UHGV-0079173_6	Structural annotation	PF20747	NA	NA
UHGV-0079173_7	PHROG	phrog_538	minor tail protein	tail
UHGV-0079173_7	UniRef90	UniRef90_UPI000C7C9115	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0079173_7	eggNOG-mapper	665956.HMPREF1032_02940	NA	NA
UHGV-0079173_7	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0079173_7	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0079173_8	PHROG	phrog_36410	NA	unknown function
UHGV-0079173_8	UniRef90	UniRef90_A0A3A6ECR2	Phage tail family protein	NA
UHGV-0079173_8	eggNOG-mapper	665956.HMPREF1032_02941	Phage tail protein	NA
UHGV-0079173_8	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0079173_9	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0079173_9	UniRef90	UniRef90_A0A316Q0J4	PblA	NA
UHGV-0079173_9	eggNOG-mapper	1089553.Tph_c23060	lysine exporter protein (LysE YggA)	NA
UHGV-0079173_9	COG	COG5185	Chromosome segregation protein NDC80, interacts with SMC proteins	NA
UHGV-0079173_9	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0079173_10	PHROG	phrog_1526	NA	unknown function
UHGV-0079173_10	UniRef90	UniRef90_A0A139NAV4	NA	NA
UHGV-0079173_10	eggNOG-mapper	936375.HMPREF1152_0686	NA	NA
UHGV-0079173_11	PHROG	phrog_117	major tail protein	tail
UHGV-0079173_11	UniRef90	UniRef90_A0A316PMT1	Phage tail protein	NA
UHGV-0079173_11	eggNOG-mapper	748224.HMPREF9436_00696	domain, Protein	NA
UHGV-0079173_11	COG	COG5492	NA	NA
UHGV-0079173_11	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0079173_12	PHROG	phrog_123	tail terminator	connector
UHGV-0079173_12	UniRef90	UniRef90_A0A139NAV0	Phage-associated protein	NA
UHGV-0079173_12	eggNOG-mapper	1321372.AQQB01000060_gene68	NA	NA
UHGV-0079173_12	Structural annotation	PF06141	NA	NA
UHGV-0079173_13	PHROG	phrog_387	neck protein	connector
UHGV-0079173_13	UniRef90	UniRef90_A0A139NAV7	Phage-associated protein	NA
UHGV-0079173_13	eggNOG-mapper	908337.HMPREF9257_0534	NA	NA
UHGV-0079173_14	PHROG	phrog_501	head closure Hc1	connector
UHGV-0079173_14	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-0079173_14	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0079173_15	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0079173_15	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0079173_15	Structural annotation	PF09355	NA	NA
UHGV-0079173_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-0079173_17	UniRef90	UniRef90_A0A1Y4TJU9	Phage major capsid protein	NA
UHGV-0079173_17	eggNOG-mapper	748224.HMPREF9436_00690	Phage capsid family	NA
UHGV-0079173_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0079173_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0079173_17	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0079173_17	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0079173_18	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0079173_18	UniRef90	UniRef90_UPI00195B7610	phage scaffolding protein	NA
UHGV-0079173_18	eggNOG-mapper	663278.Ethha_0497	NA	NA
UHGV-0079173_18	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0079173_18	Structural annotation	PF06810	NA	NA
UHGV-0079173_20	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-0079173_20	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-0079173_20	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-0079173_20	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-0079173_21	PHROG	phrog_104	portal protein	head and packaging
UHGV-0079173_21	UniRef90	UniRef90_A0A316PMS0	Phage portal protein	NA
UHGV-0079173_21	eggNOG-mapper	748224.HMPREF9436_01468	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0079173_21	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0079173_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0079173_22	UniRef90	UniRef90_UPI001F1A3C47	terminase large subunit	NA
UHGV-0079173_22	eggNOG-mapper	748224.HMPREF9436_01467	phage terminase, large subunit	NA
UHGV-0079173_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0079173_22	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-0079173_23	Structural annotation	PF19962	NA	NA
UHGV-0079173_26	Structural annotation	PF09274, NF008671, COG4710	NA	NA
UHGV-0079173_27	UniRef90	UniRef90_UPI001C10AB33	NA	NA
UHGV-0079173_27	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-0079173_27	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0079173_29	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0079173_29	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0079173_29	UniRef90	UniRef90_A0A316PJJ9	DNA primase	NA
UHGV-0079173_29	eggNOG-mapper	748224.HMPREF9436_01462	Phage plasmid primase, P4 family	NA
UHGV-0079173_29	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0079173_29	Pfam	PF19263	NA	DUF5906
UHGV-0079173_29	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0079173_29	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0079173_29	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0079173_29	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF011296, COG3378, COG4983	NA	NA
UHGV-0079173_30	Structural annotation	PF05037	NA	NA
UHGV-0079173_31	KOfam	K18959	uvsW; ATP-dependent DNA helicase UvsW [EC:5.6.2.4]	NA
UHGV-0079173_31	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0079173_31	UniRef90	UniRef90_A0A316Q0I4	Helicase ATP-binding domain-containing protein	NA
UHGV-0079173_31	eggNOG-mapper	748224.HMPREF9436_01460	Type III restriction protein res subunit	NA
UHGV-0079173_31	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0079173_31	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0079173_31	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0079173_31	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0079173_31	Structural annotation	PF04851, PF16203, MF_01489, TIGR00603, COG1061	NA	NA
UHGV-0079173_32	Structural annotation	PF03838, MF_00130, TIGR00648, COG3331	NA	NA
UHGV-0079173_33	PHROG	phrog_1366	NA	unknown function
UHGV-0079173_33	UniRef90	UniRef90_A0A1I0CM14	AAA domain-containing protein	NA
UHGV-0079173_33	eggNOG-mapper	748224.HMPREF9436_01458	AAA domain	NA
UHGV-0079173_33	Pfam	PF13479	AAA domain	AAA_24
UHGV-0079173_33	COG	COG0468	RecA/RadA recombinase	NA
UHGV-0079173_33	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0079173_36	PHROG	phrog_1733	NA	unknown function
UHGV-0079173_36	UniRef90	UniRef90_UPI00196846D9	cell envelope integrity protein TolA	NA
UHGV-0079173_36	eggNOG-mapper	665956.HMPREF1032_03597	DNA binding	NA
UHGV-0079173_36	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0079173_37	Pfam	PF12957	NA	DUF3846
UHGV-0079173_37	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-0079173_44	UniRef90	UniRef90_A0A845R4W0	XRE family transcriptional regulator	NA
UHGV-0079173_44	eggNOG-mapper	742738.HMPREF9460_02486	NA	NA
UHGV-0079173_44	Structural annotation	TIGR03070	NA	NA
UHGV-0079173_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0079173_45	UniRef90	UniRef90_A0A316PFQ5	HTH cro/C1-type domain-containing protein	NA
UHGV-0079173_45	eggNOG-mapper	665956.HMPREF1032_02614	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0079173_45	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0079173_45	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0079173_46	PHROG	phrog_87	metallo-protease	other
UHGV-0079173_46	UniRef90	UniRef90_A0A329UQ57	Peptidase_M78 domain-containing protein	NA
UHGV-0079173_46	eggNOG-mapper	411471.SUBVAR_05140	NA	NA
UHGV-0079173_46	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0079173_49	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0079173_49	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0079173_49	UniRef90	UniRef90_A0A316PMD2	Toxin-antitoxin system, toxin component, HicA family protein	NA
UHGV-0079173_49	eggNOG-mapper	335541.Swol_1661	Toxin-antitoxin system, toxin component, HicA family	NA
UHGV-0079173_49	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0079173_49	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0079173_49	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0079173_50	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0079173_50	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0079173_50	UniRef90	UniRef90_A0A316PNL2	HicB family protein	NA
UHGV-0079173_50	eggNOG-mapper	645991.Sgly_2660	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0079173_50	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0079173_50	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0079173_50	Structural annotation	PF15919, TIGR04563, COG1598, COG4710	NA	NA
UHGV-0079173_51	KOfam	K07075	NA	NA
UHGV-0079173_51	UniRef90	UniRef90_A0A316PK52	Toxin-antitoxin system, antitoxin component	NA
UHGV-0079173_51	eggNOG-mapper	411483.FAEPRAA2165_00449	Nucleotidyltransferase substrate binding protein like	NA
UHGV-0079173_51	Pfam	PF18765	Polymerase beta, Nucleotidyltransferase	Polbeta
UHGV-0079173_51	COG	COG1669	Predicted nucleotidyltransferase MJ0435	NA