UHGV-0079286

Genome information

Genome length 39,115 bps

CDS count 60

Completeness 66.73% (medium-quality)

geNomad score 0.9816

Prediction confidence Confident

Genome information
Genome ID	UHGV-0079286
vOTU ID	vOTU-039926
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_150641
BioSample	SAMEA2784461
Country	Sweden
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.73% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9816
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.37
Jumbo phage	No

Genome content
Genome length	39,115 bps
GC content	41.56%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	93.87%
Average CDS length	615.65 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0079286_1	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0079286_1	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-0079286_1	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-0079286_1	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0079286_1	Structural annotation	PF01507, MF_00063, NF002537, COG0175	NA	NA
UHGV-0079286_2	PHROG	phrog_874	NA	unknown function
UHGV-0079286_2	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-0079286_2	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0079286_2	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0079286_3	PHROG	phrog_20593	NA	unknown function
UHGV-0079286_4	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0079286_4	UniRef90	UniRef90_A0A412KFB8	Restriction alleviation protein, Lar family	NA
UHGV-0079286_4	eggNOG-mapper	1235790.C805_00069	Restriction alleviation protein Lar	NA
UHGV-0079286_4	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0079286_4	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0079286_4	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0079286_4	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0079286_5	UniRef90	UniRef90_R7BIL7	Putative DNA topoisomerase I	NA
UHGV-0079286_5	eggNOG-mapper	397290.C810_01514	NA	NA
UHGV-0079286_6	PHROG	phrog_8684	NA	unknown function
UHGV-0079286_6	UniRef90	UniRef90_UPI00164AC5B9	YopX family protein	NA
UHGV-0079286_6	eggNOG-mapper	742723.HMPREF9477_00921	YopX protein	NA
UHGV-0079286_6	Pfam	PF09643	YopX protein	YopX
UHGV-0079286_6	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0079286_6	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0079286_9	PHROG	phrog_21026	NA	unknown function
UHGV-0079286_10	Structural annotation	PF17399	NA	NA
UHGV-0079286_14	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0079286_14	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0079286_14	UniRef90	UniRef90_A0A1Q9J827	DNA helicase	NA
UHGV-0079286_14	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-0079286_14	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0079286_14	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0079286_14	COG	COG0305	Replicative DNA helicase	NA
UHGV-0079286_14	Structural annotation	PF03796, MF_04154, NF005240, COG0305	NA	NA
UHGV-0079286_15	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0079286_15	UniRef90	UniRef90_A0A413Z5U5	Phage_rep_org_N domain-containing protein	NA
UHGV-0079286_15	eggNOG-mapper	908338.HMPREF9286_0278	Phage replisome organizer N-terminal domain protein	NA
UHGV-0079286_15	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0079286_15	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0079286_15	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0079286_16	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0079286_16	UniRef90	UniRef90_A0A1Q9J756	ERCC4 domain-containing protein	NA
UHGV-0079286_16	eggNOG-mapper	1232453.BAIF02000057_gene1143	NA	NA
UHGV-0079286_16	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0079286_16	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0079286_18	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0079286_18	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0079286_18	UniRef90	UniRef90_A0A1Q6KA45	Lactamase_B domain-containing protein	NA
UHGV-0079286_18	eggNOG-mapper	1443122.Z958_05735	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0079286_18	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0079286_18	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0079286_18	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0079286_20	KOfam	K07317	K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0079286_20	PHROG	phrog_11371	NA	unknown function
UHGV-0079286_20	UniRef90	UniRef90_UPI001C033A7E	N-6 DNA methylase	NA
UHGV-0079286_20	eggNOG-mapper	1170318.PALO_02835	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0079286_20	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0079286_20	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0079286_20	Structural annotation	PF20473, MF_02217, NF001556, COG0742	NA	NA
UHGV-0079286_21	KOfam	K06940	NA	NA
UHGV-0079286_21	PHROG	phrog_32498	NA	unknown function
UHGV-0079286_21	UniRef90	UniRef90_A0A3R6ASD4	YkgJ family cysteine cluster protein	NA
UHGV-0079286_21	eggNOG-mapper	397290.C810_01479	Putative zinc- or iron-chelating domain	NA
UHGV-0079286_21	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0079286_22	PHROG	phrog_25456	NA	unknown function
UHGV-0079286_24	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0079286_24	UniRef90	UniRef90_UPI001A8D427A	recombinase RecT	NA
UHGV-0079286_24	eggNOG-mapper	537013.CLOSTMETH_01715	NA	NA
UHGV-0079286_24	Pfam	PF03837	RecT family	RecT
UHGV-0079286_24	Structural annotation	NF007351, COG3723	NA	NA
UHGV-0079286_25	eggNOG-mapper	1232453.BAIF02000057_gene1135	NA	NA
UHGV-0079286_27	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0079286_27	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0079286_27	UniRef90	UniRef90_UPI001D02FD96	AAA family ATPase	NA
UHGV-0079286_27	eggNOG-mapper	1294142.CINTURNW_1008	nuclear chromosome segregation	NA
UHGV-0079286_27	Pfam	PF13175	AAA ATPase domain	AAA_15
UHGV-0079286_27	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0079286_27	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0079286_29	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0079286_29	PHROG	phrog_26861	NA	unknown function
UHGV-0079286_29	UniRef90	UniRef90_A0A3R6HE90	Single-stranded DNA-binding protein	NA
UHGV-0079286_29	eggNOG-mapper	397288.C806_01037	Single-strand binding protein family	NA
UHGV-0079286_29	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0079286_29	NCBIFam	NF004476.0	single-stranded DNA-binding protein	NA
UHGV-0079286_29	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0079286_29	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0079286_33	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0079286_33	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0079286_33	UniRef90	UniRef90_A0A3R6F9H0	XRE family transcriptional regulator	NA
UHGV-0079286_33	eggNOG-mapper	97138.C820_01960	Helix-turn-helix XRE-family like proteins	NA
UHGV-0079286_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0079286_33	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0079286_33	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0079286_35	PHROG	phrog_17196	kinase	other
UHGV-0079286_35	UniRef90	UniRef90_D4L3U0	Peptidase S74 domain-containing protein	NA
UHGV-0079286_35	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0079286_35	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0079286_37	PHROG	phrog_18190	NA	unknown function
UHGV-0079286_37	UniRef90	UniRef90_A0A413Z640	Peptidase S74 domain-containing protein	NA
UHGV-0079286_37	eggNOG-mapper	397290.C810_01435	NA	NA
UHGV-0079286_37	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0079286_37	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0079286_38	PHROG	phrog_1194	NA	unknown function
UHGV-0079286_38	eggNOG-mapper	1235790.C805_00088	NA	NA
UHGV-0079286_38	Pfam	PF20458	NA	DUF6711
UHGV-0079286_38	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0079286_39	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0079286_39	eggNOG-mapper	411902.CLOBOL_00126	NA	NA
UHGV-0079286_39	COG	COG5283	Phage-related tail protein	NA
UHGV-0079286_40	PHROG	phrog_706	NA	unknown function
UHGV-0079286_40	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-0079286_40	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0079286_40	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0079286_40	Structural annotation	PF06854	NA	NA
UHGV-0079286_41	PHROG	phrog_11299	NA	unknown function
UHGV-0079286_41	UniRef90	UniRef90_A0A412KF72	RNA polymerase subunit sigma	NA
UHGV-0079286_41	eggNOG-mapper	1120746.CCNL01000014_gene2103	NA	NA
UHGV-0079286_41	Pfam	PF20378	NA	DUF6673
UHGV-0079286_41	Structural annotation	PF10666	NA	NA
UHGV-0079286_42	PHROG	phrog_3099	NA	unknown function
UHGV-0079286_42	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0079286_43	PHROG	phrog_3266	tail completion	connector
UHGV-0079286_43	eggNOG-mapper	397290.C810_05232	NA	NA
UHGV-0079286_43	Structural annotation	PF12691	NA	NA
UHGV-0079286_44	PHROG	phrog_3366	NA	unknown function
UHGV-0079286_44	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0079286_44	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0079286_45	PHROG	phrog_774	NA	unknown function
UHGV-0079286_45	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0079286_46	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0079286_46	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0079286_47	PHROG	phrog_247	major head protein	head and packaging
UHGV-0079286_47	UniRef90	UniRef90_A0A3R6GNQ1	Phage coat protein	NA
UHGV-0079286_47	eggNOG-mapper	536233.CLO_0886	NA	NA
UHGV-0079286_47	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0079286_47	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0079286_47	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0079286_48	eggNOG-mapper	1539298.JO41_08210	Phage minor structural protein GP20	NA
UHGV-0079286_50	UniRef90	UniRef90_R6BU26	Peptidyl-dipeptidase Dcp	NA
UHGV-0079286_51	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0079286_51	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-0079286_51	eggNOG-mapper	663278.Ethha_0091	NA	NA
UHGV-0079286_51	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0079286_51	COG	COG2369	NA	NA
UHGV-0079286_51	Structural annotation	PF06152	NA	NA
UHGV-0079286_52	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0079286_52	UniRef90	UniRef90_UPI000E4A8F9F	minor capsid protein	NA
UHGV-0079286_52	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0079286_52	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0079286_52	Structural annotation	PF11114	NA	NA
UHGV-0079286_53	PHROG	phrog_533	portal protein	head and packaging
UHGV-0079286_53	UniRef90	UniRef90_A0A3B9CD47	Phage capsid protein	NA
UHGV-0079286_53	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-0079286_53	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0079286_54	PHROG	phrog_1233	NA	unknown function
UHGV-0079286_54	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0079286_54	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0079286_55	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0079286_55	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0079286_55	UniRef90	UniRef90_A0A3R6H2I4	Terminase_3 domain-containing protein	NA
UHGV-0079286_55	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0079286_55	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0079286_55	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0079286_55	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0079286_55	COG	COG1783	Phage terminase large subunit	NA
UHGV-0079286_55	Structural annotation	PF04466, PF17288, PF06056, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0079286_56	PHROG	phrog_9479	NA	unknown function
UHGV-0079286_56	eggNOG-mapper	1514668.JOOA01000002_gene2680	NA	NA
UHGV-0079286_56	Structural annotation	PF15529	NA	NA
UHGV-0079286_58	PHROG	phrog_8680	NA	unknown function
UHGV-0079286_58	UniRef90	UniRef90_A0A3R6K733	NA	NA
UHGV-0079286_58	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0079286_58	Pfam	PF14386	NA	DUF4417
UHGV-0079286_58	Structural annotation	PF14386	NA	NA
UHGV-0079286_59	UniRef90	UniRef90_A0A3R6LT65	ABC transporter ATP-binding protein	NA
UHGV-0079286_60	UniRef90	UniRef90_C7GC16	NA	NA
UHGV-0079286_60	Pfam	PF20037	NA	DUF6440
UHGV-0079286_60	Structural annotation	PF20037	NA	NA