UHGV-0079342

Genome information

Genome length 36,517 bps

CDS count 50

Completeness 74.17% (medium-quality)

geNomad score 0.9576

Prediction confidence Confident

Genome information
Genome ID	UHGV-0079342
vOTU ID	vOTU-014999
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_141839
BioSample	SAMEA2737851
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	74.17% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9576
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	55.9
Jumbo phage	No

Genome content
Genome length	36,517 bps
GC content	34.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	90.46%
Average CDS length	664.62 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0079342_1	Structural annotation	PF07073, MF_00436, TIGR02383, COG4568	NA	NA
UHGV-0079342_2	PHROG	phrog_19468	NA	unknown function
UHGV-0079342_2	UniRef90	UniRef90_R6R6H1	Ntox50 domain-containing protein	NA
UHGV-0079342_2	eggNOG-mapper	195103.CPF_0952	Phage minor capsid protein 2	NA
UHGV-0079342_2	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0079342_2	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0079342_2	COG	COG2369	NA	NA
UHGV-0079342_3	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0079342_3	UniRef90	UniRef90_UPI0012B67342	NA	NA
UHGV-0079342_3	eggNOG-mapper	445974.CLORAM_02962	NA	NA
UHGV-0079342_4	PHROG	phrog_14088	NA	unknown function
UHGV-0079342_4	UniRef90	UniRef90_A0A3R6M7R7	Carboxypeptidase	NA
UHGV-0079342_4	eggNOG-mapper	626523.GCWU000342_01045	NA	NA
UHGV-0079342_5	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0079342_5	UniRef90	UniRef90_UPI0019674AC1	Rha family transcriptional regulator	NA
UHGV-0079342_5	eggNOG-mapper	498761.HM1_2938	phage regulatory protein, rha family	NA
UHGV-0079342_5	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0079342_5	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0079342_5	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0079342_5	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0079342_7	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0079342_7	UniRef90	UniRef90_R6QZY9	HTH cro/C1-type domain-containing protein	NA
UHGV-0079342_7	eggNOG-mapper	1235798.C817_00620	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0079342_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0079342_7	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0079342_7	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0079342_8	PHROG	phrog_87	metallo-protease	other
UHGV-0079342_8	UniRef90	UniRef90_R6R6H6	Peptidase_M78 domain-containing protein	NA
UHGV-0079342_8	eggNOG-mapper	428125.CLOLEP_01867	NA	NA
UHGV-0079342_8	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0079342_9	KOfam	K14059	int; integrase	NA
UHGV-0079342_9	PHROG	phrog_1	integrase	integration and excision
UHGV-0079342_9	UniRef90	UniRef90_R6QPK6	Integrase	NA
UHGV-0079342_9	eggNOG-mapper	279010.BL03620	Belongs to the 'phage' integrase family	NA
UHGV-0079342_9	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0079342_9	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0079342_9	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0079342_9	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0079342_10	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0079342_10	PHROG	phrog_95	integrase	integration and excision
UHGV-0079342_10	UniRef90	UniRef90_A0A415Y8B5	Recombinase family protein	NA
UHGV-0079342_10	eggNOG-mapper	1160721.RBI_I01606	NA	NA
UHGV-0079342_10	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0079342_10	Pfam	PF07508	Recombinase	Recombinase
UHGV-0079342_10	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0079342_10	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0079342_10	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0079342_11	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0079342_11	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0079342_11	UniRef90	UniRef90_A0A415Y8F6	HicB family protein	NA
UHGV-0079342_11	eggNOG-mapper	1122925.KB895394_gene1703	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0079342_11	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0079342_11	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0079342_11	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0079342_12	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0079342_12	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0079342_12	UniRef90	UniRef90_A0A415Y8D5	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0079342_12	eggNOG-mapper	411460.RUMTOR_02081	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0079342_12	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0079342_12	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0079342_12	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0079342_13	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0079342_13	PHROG	phrog_14632	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0079342_13	UniRef90	UniRef90_G7M7I1	DNA polymerase III, epsilon subunit	NA
UHGV-0079342_13	eggNOG-mapper	641107.CDLVIII_5907	EXOIII	NA
UHGV-0079342_13	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0079342_13	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0079342_13	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0079342_13	COG	COG2176	DNA polymerase III, alpha subunit (gram-positive type)	NA
UHGV-0079342_14	PHROG	phrog_1914	NA	unknown function
UHGV-0079342_14	UniRef90	UniRef90_UPI000D0F8E13	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0079342_14	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0079342_14	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0079342_14	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0079342_14	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0079342_15	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0079342_15	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0079342_15	UniRef90	UniRef90_UPI000D0ECDA6	helix-turn-helix domain-containing protein	NA
UHGV-0079342_15	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0079342_15	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0079342_15	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-0079342_16	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0079342_18	AcrCatalog	cluster_173058	NA	NA
UHGV-0079342_19	PHROG	phrog_38338	NA	unknown function
UHGV-0079342_19	eggNOG-mapper	1514668.JOOA01000001_gene227	NA	NA
UHGV-0079342_20	PHROG	phrog_8470	NA	unknown function
UHGV-0079342_20	UniRef90	UniRef90_A0A315Y141	PcfJ-like protein	NA
UHGV-0079342_20	eggNOG-mapper	1514668.JOOA01000001_gene226	PcfJ-like protein	NA
UHGV-0079342_20	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0079342_20	Structural annotation	PF14284	NA	NA
UHGV-0079342_21	PHROG	phrog_15609	NA	unknown function
UHGV-0079342_21	UniRef90	UniRef90_A0A373VML2	NA	NA
UHGV-0079342_21	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-0079342_21	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0079342_23	PHROG	phrog_22040	NA	unknown function
UHGV-0079342_23	Structural annotation	PF07073, COG4568	NA	NA
UHGV-0079342_24	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0079342_24	UniRef90	UniRef90_R6RCC6	Gp31	NA
UHGV-0079342_24	eggNOG-mapper	1151292.QEW_0318	NA	NA
UHGV-0079342_24	Structural annotation	PF21578, NF033538	NA	NA
UHGV-0079342_25	PHROG	phrog_824	NA	unknown function
UHGV-0079342_25	UniRef90	UniRef90_A0A3R6I6C8	VRR-NUC domain-containing protein	NA
UHGV-0079342_25	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0079342_25	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0079342_26	PHROG	phrog_24368	NA	unknown function
UHGV-0079342_26	eggNOG-mapper	742740.HMPREF9474_04313	NA	NA
UHGV-0079342_27	eggNOG-mapper	1235798.C817_02584	NA	NA
UHGV-0079342_28	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0079342_28	UniRef90	UniRef90_D9SQ19	Prophage LambdaBa04, GP54	NA
UHGV-0079342_28	eggNOG-mapper	1203606.HMPREF1526_00983	HNH endonuclease	NA
UHGV-0079342_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0079342_29	PHROG	phrog_1066	NA	unknown function
UHGV-0079342_29	eggNOG-mapper	1033738.CAEP01000018_gene3668	NA	NA
UHGV-0079342_29	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0079342_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0079342_30	UniRef90	UniRef90_A0A415Y8D8	Terminase large subunit	NA
UHGV-0079342_30	eggNOG-mapper	1211814.CAPG01000074_gene3457	Terminase	NA
UHGV-0079342_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0079342_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0079342_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0079342_30	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0079342_31	PHROG	phrog_12	portal protein	head and packaging
UHGV-0079342_31	UniRef90	UniRef90_A0A3R6I7J3	Phage portal protein	NA
UHGV-0079342_31	eggNOG-mapper	1382358.JHVN01000024_gene1705	Phage portal protein	NA
UHGV-0079342_31	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0079342_31	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0079342_31	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0079342_32	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0079342_32	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0079342_32	UniRef90	UniRef90_A0A3R6KJN0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0079342_32	eggNOG-mapper	1203606.HMPREF1526_00979	Belongs to the peptidase S14 family	NA
UHGV-0079342_32	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0079342_32	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0079342_32	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0079342_33	PHROG	phrog_10	major head protein	head and packaging
UHGV-0079342_33	UniRef90	UniRef90_A0A3R6LFW5	Phage major capsid protein	NA
UHGV-0079342_33	eggNOG-mapper	1382358.JHVN01000024_gene1707	Phage capsid family	NA
UHGV-0079342_33	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0079342_33	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0079342_33	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0079342_33	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0079342_34	PHROG	phrog_5223	neck protein	connector
UHGV-0079342_34	UniRef90	UniRef90_A0A415Y8G5	Phage gp6-like head-tail connector protein	NA
UHGV-0079342_34	eggNOG-mapper	1414720.CBYM010000040_gene1648	NA	NA
UHGV-0079342_34	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0079342_34	Structural annotation	TIGR01560	NA	NA
UHGV-0079342_35	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0079342_35	UniRef90	UniRef90_UPI001628F91A	phage head closure protein	NA
UHGV-0079342_35	eggNOG-mapper	1033738.CAEP01000018_gene3675	head-tail adaptor	NA
UHGV-0079342_35	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0079342_35	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0079342_35	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0079342_36	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0079342_36	UniRef90	UniRef90_A0A3R6LZU7	HK97 gp10 family phage protein	NA
UHGV-0079342_36	eggNOG-mapper	1123263.AUKY01000027_gene842	NA	NA
UHGV-0079342_36	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0079342_37	eggNOG-mapper	411460.RUMTOR_00476	COG NOG18352 non supervised orthologous group	NA
UHGV-0079342_37	Structural annotation	PF20765	NA	NA
UHGV-0079342_38	PHROG	phrog_88	major tail protein	tail
UHGV-0079342_38	UniRef90	UniRef90_A0A1G5CNS8	Phage major tail protein, phi13 family	NA
UHGV-0079342_38	eggNOG-mapper	1121871.AUAT01000030_gene1032	phage tail protein	NA
UHGV-0079342_38	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0079342_38	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0079342_39	PHROG	phrog_709	NA	unknown function
UHGV-0079342_39	eggNOG-mapper	1211814.CAPG01000074_gene3447	NA	NA
UHGV-0079342_39	Structural annotation	PF19591	NA	NA
UHGV-0079342_41	KOfam	K03529	smc; chromosome segregation protein	NA
UHGV-0079342_41	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0079342_41	UniRef90	UniRef90_A0A3R6MW14	TOG domain-containing protein	NA
UHGV-0079342_41	eggNOG-mapper	665950.HMPREF1025_02680	Phage-related minor tail protein	NA
UHGV-0079342_41	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0079342_41	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0079342_41	Structural annotation	COG5280	NA	NA
UHGV-0079342_42	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0079342_42	UniRef90	UniRef90_UPI00164BA811	phage tail family protein	NA
UHGV-0079342_42	eggNOG-mapper	1444306.JFZC01000034_gene2623	tail component	NA
UHGV-0079342_42	COG	COG4722	Phage-related protein YomH	NA
UHGV-0079342_42	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0079342_43	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0079342_43	UniRef90	UniRef90_A0A3R6I686	Prophage_tail domain-containing protein	NA
UHGV-0079342_43	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0079342_43	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0079342_43	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0079342_43	COG	COG4926	Phage-related protein	NA
UHGV-0079342_43	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0079342_44	UniRef90	UniRef90_A0A3R6KJJ3	NA	NA
UHGV-0079342_44	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0079342_44	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0079342_46	PHROG	phrog_199	holin	lysis
UHGV-0079342_46	UniRef90	UniRef90_A0A373XMP0	Holin	NA
UHGV-0079342_46	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0079342_46	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0079342_46	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0079342_46	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0079342_46	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0079342_48	Structural annotation	PF02796, COG2771	NA	NA
UHGV-0079342_49	KOfam	K07273	acm; lysozyme	NA
UHGV-0079342_49	PHROG	phrog_291	endolysin	lysis
UHGV-0079342_49	UniRef90	UniRef90_A0A1C6IR05	Lysozyme M1	NA
UHGV-0079342_49	eggNOG-mapper	1304880.JAGB01000002_gene2202	Glycosyl hydrolase, family 25	NA
UHGV-0079342_49	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0079342_49	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0079342_49	COG	COG1388	LysM repeat	NA
UHGV-0079342_49	Structural annotation	PF01183, PF01476, TIGR02899, NF007360, COG3757, COG1388	NA	NA
UHGV-0079342_50	UniRef90	UniRef90_A0A3R6MW22	HEPN_Cthe2314 domain-containing protein	NA
UHGV-0079342_50	eggNOG-mapper	500632.CLONEX_03279	NA	NA
UHGV-0079342_50	Pfam	PF18730	Cthe_2314-like HEPN	HEPN_Cthe2314